Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 O 1.42896 * 109.47412 * 239.99868 * 2 1 3 5 5 C 1.42907 * 114.00203 * 89.99867 * 4 2 1 6 6 C 1.52997 * 109.47307 * 180.02562 * 5 4 2 7 7 C 1.52997 * 117.49992 * 243.74823 * 6 5 4 8 8 C 1.52994 * 117.50060 * 175.08708 * 6 5 4 9 9 C 1.50696 * 109.46910 * 119.99705 * 2 1 3 10 10 O 1.21284 * 120.00109 * 120.00064 * 9 2 1 11 11 N 1.34777 * 120.00137 * 299.99848 * 9 2 1 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 2 13 13 H 1.08999 * 110.28816 * 34.30290 * 12 11 9 14 14 C 1.54259 * 110.32497 * 272.17565 * 12 11 9 15 15 C 1.54379 * 105.05964 * 241.10536 * 14 12 11 16 16 N 1.48565 * 104.59548 * 23.85191 * 15 14 12 17 17 C 1.46901 * 111.00098 * 200.95875 * 16 15 14 18 18 C 1.50700 * 109.47123 * 290.12799 * 17 16 15 19 19 O 1.21292 * 120.00012 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99840 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00094 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99498 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00154 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99870 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00156 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46860 * 89.99673 * 25 23 21 27 27 H 1.48494 * 109.46807 * 209.99727 * 25 23 21 28 28 H 1.48497 * 109.46865 * 329.99847 * 25 23 21 29 29 C 1.48825 * 104.23612 * 320.49272 * 16 15 14 30 30 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47624 * 300.00469 * 1 2 3 32 32 H 1.09002 * 109.47045 * 60.00093 * 1 2 3 33 33 H 1.09005 * 109.46768 * 300.00456 * 5 4 2 34 34 H 1.09000 * 109.46918 * 59.99700 * 5 4 2 35 35 H 1.09003 * 115.54598 * 29.41751 * 6 5 4 36 36 H 1.09000 * 117.49619 * 359.97438 * 7 6 5 37 37 H 1.08997 * 117.49876 * 145.01729 * 7 6 5 38 38 H 1.09000 * 117.50204 * 214.97796 * 8 6 5 39 39 H 1.09001 * 117.49853 * 0.02562 * 8 6 5 40 40 H 0.96995 * 120.00018 * 0.27749 * 11 9 2 41 41 H 1.09001 * 110.32505 * 359.97438 * 14 12 11 42 42 H 1.08995 * 110.32587 * 122.20826 * 14 12 11 43 43 H 1.08998 * 110.41335 * 142.63310 * 15 14 12 44 44 H 1.08998 * 110.41192 * 264.95598 * 15 14 12 45 45 H 1.09000 * 109.46698 * 50.12842 * 17 16 15 46 46 H 1.08998 * 109.46832 * 170.12651 * 17 16 15 47 47 H 0.97002 * 119.99843 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99832 * 180.02562 * 24 23 21 49 49 H 1.09001 * 110.45117 * 280.77297 * 29 16 15 50 50 H 1.08998 * 110.49344 * 158.24429 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7080 -0.6408 -3.4792 7 6 4.1060 -0.3228 -4.0131 8 6 2.8687 0.0764 -4.8210 9 6 2.0322 -0.7103 1.2305 10 8 2.7295 -1.6964 1.1193 11 7 1.7067 -0.2498 2.4546 12 6 2.1945 -0.9408 3.6508 13 1 3.1889 -1.3497 3.4719 14 6 1.2182 -2.0641 4.0563 15 6 0.7340 -1.6831 5.4718 16 7 0.9264 -0.2120 5.5500 17 6 0.9899 0.2372 6.9472 18 6 -0.3708 0.1023 7.5806 19 8 -1.3021 -0.3254 6.9317 20 7 -0.5532 0.4580 8.8677 21 6 -1.7911 0.3348 9.4442 22 1 -2.6200 -0.0468 8.8666 23 6 -1.9790 0.7010 10.7713 24 7 -0.9701 1.1649 11.4741 25 14 -3.6657 0.5339 11.5565 26 1 -3.7954 -0.8128 12.1687 27 1 -3.8284 1.5723 12.6054 28 1 -4.7140 0.7092 10.5194 29 6 2.2207 0.0253 4.8547 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.2538 0.6546 -2.5588 34 1 2.9319 0.9514 -2.0450 35 1 2.3859 -1.6820 -3.5004 36 1 4.6638 0.4736 -3.5204 37 1 4.7036 -1.1546 -4.3860 38 1 2.6527 -0.4928 -5.7250 39 1 2.6129 1.1353 -4.8594 40 1 1.1457 0.5365 2.5435 41 1 0.3758 -2.1012 3.3657 42 1 1.7338 -3.0242 4.0782 43 1 -0.3192 -1.9358 5.5942 44 1 1.3355 -2.1876 6.2280 45 1 1.7073 -0.3753 7.4934 46 1 1.3040 1.2804 6.9794 47 1 0.1915 0.8004 9.3865 48 1 -1.1012 1.4202 12.4006 49 1 3.0560 -0.2113 5.5139 50 1 2.2861 1.0579 4.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713817280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -83.171475 kcal Electronic energy + Delta-G solvation = -29026.099985 eV Core-core repulsion = 24861.416708 eV Total energy + Delta-G solvation = -4164.683277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36937 -39.14931 -38.41544 -37.50477 -36.74038 -34.44912 -33.81693 -32.12758 -31.27438 -30.55766 -28.42277 -27.48217 -26.57486 -24.53262 -24.03519 -22.80390 -21.32407 -21.22877 -20.93406 -20.27927 -19.19434 -17.90569 -17.60944 -17.39561 -16.43279 -16.13393 -15.98140 -15.54070 -15.42395 -14.87739 -14.73677 -14.54302 -14.44866 -14.11243 -13.77694 -13.71900 -13.34001 -13.16679 -12.98287 -12.65897 -12.46138 -12.16251 -12.00390 -12.00270 -11.88914 -11.73966 -11.50681 -11.48615 -11.38843 -11.11303 -10.90660 -10.87833 -10.71114 -10.69694 -10.40035 -10.22825 -10.09761 -9.59960 -9.50442 -9.19140 -8.52682 -8.06853 -7.96018 -6.42714 -3.83515 2.45167 2.62643 3.16910 3.25684 3.29759 3.31414 3.60682 3.89231 4.00753 4.25122 4.33154 4.42521 4.45560 4.53745 4.59611 4.63376 4.70931 4.80874 4.88067 5.01691 5.07704 5.19386 5.19703 5.21899 5.26440 5.29200 5.34906 5.38763 5.44150 5.46990 5.66684 5.67676 5.70630 5.75911 5.78559 5.80340 5.82273 5.97088 6.16504 6.25754 6.41954 6.44327 6.75982 7.05484 7.14463 7.40674 7.54179 8.05110 8.11064 8.60788 9.17297 9.53479 10.05328 10.75048 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030758 B = 0.001660 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.118262 B =16865.396532 C =17227.932885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.072 3.928 3 H 0.086 0.914 4 O -0.354 6.354 5 C 0.091 3.909 6 C -0.152 4.152 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.514 3.486 10 O -0.522 6.522 11 N -0.713 5.713 12 C 0.145 3.855 13 H 0.094 0.906 14 C -0.133 4.133 15 C 0.037 3.963 16 N -0.484 5.484 17 C 0.034 3.966 18 C 0.445 3.555 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.020 3.980 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.405 0.595 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.040 0.960 45 H 0.051 0.949 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.057 0.943 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.029 1.277 -24.704 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.011 3.989 3 H 0.104 0.896 4 O -0.272 6.272 5 C 0.014 3.986 6 C -0.170 4.170 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.299 3.701 10 O -0.397 6.397 11 N -0.367 5.367 12 C 0.040 3.960 13 H 0.112 0.888 14 C -0.172 4.172 15 C -0.091 4.091 16 N -0.208 5.208 17 C -0.098 4.098 18 C 0.230 3.770 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.108 4.108 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.240 0.760 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 9.510 0.437 -25.268 27.002 hybrid contribution 0.020 0.464 1.393 1.469 sum 9.530 0.900 -23.874 25.722 Atomic orbital electron populations 1.22261 0.93272 1.04108 1.03364 1.21878 0.95232 0.96187 0.85633 0.89625 1.88042 1.86482 1.33955 1.18724 1.22116 0.99244 0.91931 0.85267 1.22104 1.00499 1.01150 0.93287 1.23083 0.90846 1.03618 1.03820 1.22993 1.02539 1.01082 0.94498 1.20346 0.80474 0.84980 0.84291 1.90719 1.36992 1.25494 1.86515 1.46012 1.53516 1.32467 1.04738 1.21675 0.98250 0.92461 0.83585 0.88781 1.22781 0.99195 0.97877 0.97357 1.23187 1.03448 0.87556 0.94906 1.65265 1.27709 1.14490 1.13330 1.22066 0.97321 1.01472 0.88953 1.19678 0.89512 0.84800 0.83001 1.90505 1.42961 1.50218 1.62470 1.41859 1.11896 1.56969 1.09458 1.19693 0.88097 1.40454 0.94585 0.87935 1.25251 0.99260 0.96985 0.96417 1.69613 1.31047 1.43744 1.09956 0.85864 0.81817 0.77895 0.78752 1.20440 1.20936 1.19427 1.23499 0.92505 0.99957 0.94865 0.90934 0.90480 0.91258 0.92630 0.93062 0.86679 0.88661 0.88527 0.88349 0.88660 0.75976 0.90511 0.90895 0.88085 0.94210 0.93110 0.89264 0.77526 0.91896 0.92441 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.42 37.16 0.35 -0.99 16 2 C 0.07 0.67 3.14 -27.89 -0.09 0.58 16 3 H 0.09 0.57 7.79 -51.93 -0.40 0.17 16 4 O -0.35 -3.96 9.52 -55.14 -0.52 -4.49 16 5 C 0.09 0.72 6.03 37.16 0.22 0.94 16 6 C -0.15 -1.17 6.05 -90.63 -0.55 -1.72 16 7 C -0.18 -1.17 10.18 -26.70 -0.27 -1.44 16 8 C -0.17 -0.98 10.25 -26.70 -0.27 -1.26 16 9 C 0.51 6.23 7.23 -10.99 -0.08 6.15 16 10 O -0.52 -8.56 16.17 -14.36 -0.23 -8.79 16 11 N -0.71 -7.49 4.88 -52.46 -0.26 -7.75 16 12 C 0.15 1.70 3.38 -66.54 -0.22 1.47 16 13 H 0.09 1.14 7.60 -51.93 -0.39 0.74 16 14 C -0.13 -1.74 6.79 -25.35 -0.17 -1.91 16 15 C 0.04 0.57 5.80 -2.18 -0.01 0.56 16 16 N -0.48 -7.50 5.07 -231.17 -1.17 -8.67 16 17 C 0.03 0.57 5.30 -4.98 -0.03 0.55 16 18 C 0.44 10.23 7.58 -10.98 -0.08 10.15 16 19 O -0.58 -15.21 14.42 5.55 0.08 -15.13 16 20 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 25 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 29 C 0.02 0.24 6.11 -2.03 -0.01 0.22 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.52 7.56 -51.93 -0.39 0.13 16 32 H 0.07 0.44 7.87 -51.93 -0.41 0.03 16 33 H 0.06 0.35 7.87 -51.93 -0.41 -0.05 16 34 H 0.05 0.36 7.82 -51.93 -0.41 -0.05 16 35 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.59 8.03 -51.93 -0.42 0.17 16 37 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.40 3.55 8.00 -40.82 -0.33 3.22 16 41 H 0.08 1.06 7.95 -51.93 -0.41 0.65 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.10 1.89 6.91 -51.93 -0.36 1.53 16 44 H 0.04 0.60 7.83 -51.93 -0.41 0.19 16 45 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 46 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.06 0.61 8.00 -51.93 -0.42 0.20 16 50 H 0.09 0.88 8.01 -51.93 -0.42 0.47 16 LS Contribution 411.18 15.07 6.20 6.20 Total: -1.00 -33.82 411.18 -10.09 -43.91 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -8.37 Total: 11.14 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -1.46 Total: 5.43 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.76 Total: -54.12 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.68 Total: -28.42 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.82 -10.09 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713817280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.259 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds