Wall clock time and date at job start Sat Apr 11 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 O 1.42896 * 109.47412 * 239.99868 * 2 1 3 5 5 C 1.42907 * 114.00203 * 89.99867 * 4 2 1 6 6 C 1.52997 * 109.47307 * 180.02562 * 5 4 2 7 7 C 1.52997 * 117.49992 * 243.74823 * 6 5 4 8 8 C 1.52994 * 117.50060 * 175.08708 * 6 5 4 9 9 C 1.50696 * 109.46910 * 119.99705 * 2 1 3 10 10 O 1.21284 * 120.00109 * 120.00064 * 9 2 1 11 11 N 1.34777 * 120.00137 * 299.99848 * 9 2 1 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 2 13 13 H 1.08999 * 110.28816 * 34.30290 * 12 11 9 14 14 C 1.54259 * 110.32497 * 272.17565 * 12 11 9 15 15 C 1.54379 * 105.05964 * 241.10536 * 14 12 11 16 16 N 1.48565 * 104.59548 * 23.85191 * 15 14 12 17 17 C 1.46901 * 111.00098 * 200.95875 * 16 15 14 18 18 C 1.50700 * 109.47123 * 290.12799 * 17 16 15 19 19 O 1.21292 * 120.00012 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99840 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00094 * 180.02562 * 20 18 17 22 22 H 1.07999 * 119.99498 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00154 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99870 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00156 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46860 * 89.99673 * 25 23 21 27 27 H 1.48494 * 109.46807 * 209.99727 * 25 23 21 28 28 H 1.48497 * 109.46865 * 329.99847 * 25 23 21 29 29 C 1.48825 * 104.23612 * 320.49272 * 16 15 14 30 30 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47624 * 300.00469 * 1 2 3 32 32 H 1.09002 * 109.47045 * 60.00093 * 1 2 3 33 33 H 1.09005 * 109.46768 * 300.00456 * 5 4 2 34 34 H 1.09000 * 109.46918 * 59.99700 * 5 4 2 35 35 H 1.09003 * 115.54598 * 29.41751 * 6 5 4 36 36 H 1.09000 * 117.49619 * 359.97438 * 7 6 5 37 37 H 1.08997 * 117.49876 * 145.01729 * 7 6 5 38 38 H 1.09000 * 117.50204 * 214.97796 * 8 6 5 39 39 H 1.09001 * 117.49853 * 0.02562 * 8 6 5 40 40 H 0.96995 * 120.00018 * 0.27749 * 11 9 2 41 41 H 1.09001 * 110.32505 * 359.97438 * 14 12 11 42 42 H 1.08995 * 110.32587 * 122.20826 * 14 12 11 43 43 H 1.08998 * 110.41335 * 142.63310 * 15 14 12 44 44 H 1.08998 * 110.41192 * 264.95598 * 15 14 12 45 45 H 1.09000 * 109.46698 * 50.12842 * 17 16 15 46 46 H 1.08998 * 109.46832 * 170.12651 * 17 16 15 47 47 H 0.97002 * 119.99843 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99832 * 180.02562 * 24 23 21 49 49 H 1.09001 * 110.45117 * 280.77297 * 29 16 15 50 50 H 1.08998 * 110.49344 * 158.24429 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2941 6 6 2.7080 -0.6408 -3.4792 7 6 4.1060 -0.3228 -4.0131 8 6 2.8687 0.0764 -4.8210 9 6 2.0322 -0.7103 1.2305 10 8 2.7295 -1.6964 1.1193 11 7 1.7067 -0.2498 2.4546 12 6 2.1945 -0.9408 3.6508 13 1 3.1889 -1.3497 3.4719 14 6 1.2182 -2.0641 4.0563 15 6 0.7340 -1.6831 5.4718 16 7 0.9264 -0.2120 5.5500 17 6 0.9899 0.2372 6.9472 18 6 -0.3708 0.1023 7.5806 19 8 -1.3021 -0.3254 6.9317 20 7 -0.5532 0.4580 8.8677 21 6 -1.7911 0.3348 9.4442 22 1 -2.6200 -0.0468 8.8666 23 6 -1.9790 0.7010 10.7713 24 7 -0.9701 1.1649 11.4741 25 14 -3.6657 0.5339 11.5565 26 1 -3.7954 -0.8128 12.1687 27 1 -3.8284 1.5723 12.6054 28 1 -4.7140 0.7092 10.5194 29 6 2.2207 0.0253 4.8547 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.2538 0.6546 -2.5588 34 1 2.9319 0.9514 -2.0450 35 1 2.3859 -1.6820 -3.5004 36 1 4.6638 0.4736 -3.5204 37 1 4.7036 -1.1546 -4.3860 38 1 2.6527 -0.4928 -5.7250 39 1 2.6129 1.1353 -4.8594 40 1 1.1457 0.5365 2.5435 41 1 0.3758 -2.1012 3.3657 42 1 1.7338 -3.0242 4.0782 43 1 -0.3192 -1.9358 5.5942 44 1 1.3355 -2.1876 6.2280 45 1 1.7073 -0.3753 7.4934 46 1 1.3040 1.2804 6.9794 47 1 0.1915 0.8004 9.3865 48 1 -1.1012 1.4202 12.4006 49 1 3.0560 -0.2113 5.5139 50 1 2.2861 1.0579 4.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713817280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:16 Heat of formation + Delta-G solvation = -107.703605 kcal Electronic energy + Delta-G solvation = -29027.163778 eV Core-core repulsion = 24861.416708 eV Total energy + Delta-G solvation = -4165.747070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.33485 -40.41660 -39.44391 -38.76648 -37.42320 -35.98940 -35.33692 -33.32771 -32.93305 -31.64142 -29.49150 -28.09057 -28.06298 -26.06196 -25.05390 -23.25861 -22.51161 -22.05516 -21.68172 -21.21402 -20.94633 -19.85637 -18.44223 -18.20741 -17.71550 -17.28911 -16.87081 -16.64343 -16.47590 -16.29223 -16.02662 -15.65164 -15.55553 -15.38982 -15.14422 -14.75179 -14.46528 -14.06310 -13.97342 -13.72976 -13.52231 -13.33436 -13.24610 -13.13157 -12.99481 -12.81202 -12.62150 -12.60949 -12.39613 -12.37943 -12.13573 -12.10578 -11.99594 -11.87379 -11.45976 -11.40502 -11.28522 -10.86362 -10.39146 -10.33572 -10.09485 -9.98062 -9.37842 -8.44956 -5.93131 1.38584 1.42426 1.54279 1.54769 1.83960 2.08942 2.29548 2.70401 2.82115 3.00580 3.22146 3.39294 3.49719 3.69093 3.79955 3.86163 3.91863 3.97135 4.06590 4.13762 4.14749 4.27230 4.32038 4.33693 4.45572 4.46995 4.49517 4.56413 4.67916 4.70212 4.71143 4.74263 4.77644 4.80185 4.87295 5.01094 5.06488 5.15058 5.20545 5.21916 5.24532 5.42571 5.46974 5.83625 5.88735 6.08199 6.12241 6.56551 6.63199 7.15580 7.22039 7.59624 8.15827 8.72428 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030758 B = 0.001660 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.118262 B =16865.396532 C =17227.932885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.074 3.926 3 H 0.118 0.882 4 O -0.386 6.386 5 C 0.088 3.912 6 C -0.174 4.174 7 C -0.183 4.183 8 C -0.156 4.156 9 C 0.512 3.488 10 O -0.571 6.571 11 N -0.702 5.702 12 C 0.150 3.850 13 H 0.095 0.905 14 C -0.125 4.125 15 C 0.040 3.960 16 N -0.500 5.500 17 C 0.046 3.954 18 C 0.442 3.558 19 O -0.616 6.616 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.274 1.274 29 C 0.029 3.971 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.416 0.584 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.116 0.884 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.076 0.924 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.815 3.078 -25.358 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 H 0.136 0.864 4 O -0.305 6.305 5 C 0.013 3.987 6 C -0.192 4.192 7 C -0.220 4.220 8 C -0.193 4.193 9 C 0.298 3.702 10 O -0.450 6.450 11 N -0.356 5.356 12 C 0.044 3.956 13 H 0.113 0.887 14 C -0.164 4.164 15 C -0.088 4.088 16 N -0.225 5.225 17 C -0.085 4.085 18 C 0.229 3.771 19 O -0.502 6.502 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.562 5.562 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.099 4.099 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.253 0.747 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.134 0.866 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.306 2.272 -25.920 27.986 hybrid contribution -0.207 -0.129 1.532 1.551 sum 10.099 2.144 -24.388 26.483 Atomic orbital electron populations 1.22243 0.92183 1.03195 1.04874 1.21978 0.95876 0.96962 0.83884 0.86450 1.88013 1.86801 1.35824 1.19889 1.22283 1.00430 0.91748 0.84283 1.22133 1.01651 1.00716 0.94725 1.23166 0.90811 1.03871 1.04176 1.23079 1.00913 1.01738 0.93599 1.20944 0.79503 0.84360 0.85350 1.90695 1.39352 1.27725 1.87216 1.45934 1.53067 1.32411 1.04150 1.21584 0.97724 0.92134 0.84145 0.88686 1.22687 0.99190 0.98949 0.95609 1.23031 1.01144 0.88168 0.96483 1.65198 1.30613 1.14132 1.12544 1.21941 0.93393 1.03588 0.89620 1.20778 0.91527 0.82580 0.82176 1.90486 1.45148 1.51313 1.63218 1.41926 1.11264 1.57796 1.10343 1.19639 0.88835 1.42262 0.95397 0.90425 1.25984 1.02721 0.96154 0.96303 1.69670 1.32451 1.43701 1.10338 0.84962 0.77499 0.78282 0.77806 1.19821 1.19561 1.19842 1.23559 0.90956 1.01082 0.94300 0.93044 0.89364 0.89331 0.90947 0.91972 0.88466 0.88165 0.88601 0.87600 0.87207 0.74681 0.91666 0.90290 0.92053 0.93809 0.91092 0.86601 0.77033 0.91384 0.90575 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.42 71.98 0.68 -1.67 16 2 C 0.07 1.26 3.14 29.85 0.09 1.35 16 3 H 0.12 1.22 7.79 -2.39 -0.02 1.20 16 4 O -0.39 -8.41 9.52 -129.94 -1.24 -9.65 16 5 C 0.09 1.27 6.03 71.98 0.43 1.70 16 6 C -0.17 -2.57 6.05 -10.80 -0.07 -2.63 16 7 C -0.18 -2.25 10.18 30.62 0.31 -1.94 16 8 C -0.16 -1.50 10.25 30.62 0.31 -1.19 16 9 C 0.51 11.94 7.23 87.66 0.63 12.58 16 10 O -0.57 -18.82 16.17 16.00 0.26 -18.56 16 11 N -0.70 -13.58 4.88 -438.28 -2.14 -15.72 16 12 C 0.15 3.24 3.38 45.89 0.15 3.40 16 13 H 0.10 2.14 7.60 -2.39 -0.02 2.12 16 14 C -0.13 -3.23 6.79 31.49 0.21 -3.02 16 15 C 0.04 1.24 5.80 86.45 0.50 1.74 16 16 N -0.50 -14.72 5.07 -885.30 -4.49 -19.21 16 17 C 0.05 1.48 5.30 85.56 0.45 1.94 16 18 C 0.44 20.42 7.58 87.66 0.66 21.09 16 19 O -0.62 -33.31 14.42 -3.07 -0.04 -33.35 16 20 N -0.58 -28.96 5.29 -306.98 -1.62 -30.58 16 21 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.15 13.05 21.66 0.28 -48.86 16 25 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 29 C 0.03 0.58 6.11 86.40 0.53 1.11 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.02 7.56 -2.39 -0.02 1.00 16 32 H 0.09 0.90 7.87 -2.39 -0.02 0.88 16 33 H 0.07 0.76 7.87 -2.38 -0.02 0.74 16 34 H 0.06 0.73 7.82 -2.39 -0.02 0.71 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 1.11 8.03 -2.39 -0.02 1.09 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.42 6.29 8.00 -92.71 -0.74 5.54 16 41 H 0.06 1.83 7.95 -2.39 -0.02 1.81 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 43 H 0.06 2.39 6.91 -2.39 -0.02 2.38 16 44 H 0.04 1.30 7.83 -2.39 -0.02 1.28 16 45 H 0.07 2.04 7.88 -2.39 -0.02 2.02 16 46 H 0.12 3.16 8.13 -2.39 -0.02 3.14 16 47 H 0.40 18.86 7.90 -92.71 -0.73 18.12 16 48 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 49 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16 50 H 0.11 1.77 8.01 -2.39 -0.02 1.75 16 Total: -1.00 -75.64 411.18 -1.28 -76.93 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.52 Total: 37.84 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 6.20 Total: 16.45 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -7.96 Total: -114.36 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -1.02 Total: -61.56 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -75.64 -1.28 -76.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713817280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.777 kcal (2) G-P(sol) polarization free energy of solvation -75.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds