Wall clock time and date at job start Sat Apr 11 2020 05:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47176 * 2 1 4 4 C 1.46503 * 120.00134 * 89.99870 * 3 2 1 5 5 C 1.52995 * 109.47113 * 270.00477 * 4 3 2 6 6 N 1.46906 * 109.46965 * 179.97438 * 5 4 3 7 7 C 1.46899 * 110.99961 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47344 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99327 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99929 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99476 * 179.97438 * 10 8 7 12 12 H 1.07991 * 120.00225 * 0.02562 * 11 10 8 13 13 C 1.38952 * 119.99605 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00188 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99775 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47599 * 59.99923 * 15 13 11 17 17 H 1.48504 * 109.47125 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46821 * 299.99719 * 15 13 11 19 19 C 1.34768 * 119.99964 * 270.00251 * 3 2 1 20 20 O 1.21284 * 120.00249 * 180.02562 * 19 3 2 21 21 C 1.50705 * 120.00279 * 359.97438 * 19 3 2 22 22 H 1.08999 * 115.55637 * 54.37144 * 21 19 3 23 23 C 1.53175 * 117.52358 * 200.23414 * 21 19 3 24 24 C 1.52125 * 59.77567 * 107.42644 * 23 21 19 25 25 C 1.54043 * 121.47135 * 249.13934 * 24 23 21 26 26 C 1.55181 * 101.82687 * 195.70070 * 25 24 23 27 27 O 1.44452 * 103.63485 * 36.33383 * 26 25 24 28 28 C 1.43993 * 107.04854 * 320.42872 * 27 26 25 29 29 H 1.08997 * 109.47358 * 59.99768 * 1 2 3 30 30 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47250 * 299.99778 * 1 2 3 32 32 H 1.09000 * 109.47148 * 239.99452 * 2 1 3 33 33 H 1.09000 * 109.46660 * 120.00013 * 2 1 3 34 34 H 1.08992 * 109.47283 * 150.00067 * 4 3 2 35 35 H 1.09003 * 109.46902 * 29.99606 * 4 3 2 36 36 H 1.09002 * 109.47866 * 59.99917 * 5 4 3 37 37 H 1.09000 * 109.47240 * 299.99514 * 5 4 3 38 38 H 1.00892 * 111.00133 * 303.94878 * 6 5 4 39 39 H 1.09000 * 109.47082 * 59.99810 * 7 6 5 40 40 H 1.09003 * 109.47209 * 300.00011 * 7 6 5 41 41 H 0.96991 * 120.00139 * 0.02562 * 10 8 7 42 42 H 0.96996 * 119.99670 * 179.97438 * 14 13 11 43 43 H 1.09008 * 117.51709 * 214.85058 * 23 21 19 44 44 H 1.08994 * 117.52477 * 359.97438 * 23 21 19 45 45 H 1.08998 * 110.95976 * 313.84203 * 25 24 23 46 46 H 1.09006 * 110.95237 * 77.57298 * 25 24 23 47 47 H 1.09003 * 110.59491 * 277.79161 * 26 25 24 48 48 H 1.09011 * 110.58799 * 154.86948 * 26 25 24 49 49 H 1.08993 * 109.97163 * 266.94037 * 28 27 26 50 50 H 1.08991 * 109.97169 * 145.66110 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9875 2.7930 1.7104 6 7 1.2322 3.4850 2.9829 7 6 0.0271 4.1908 3.4386 8 6 0.3157 4.8865 4.7439 9 8 1.4171 4.8030 5.2449 10 7 -0.6497 5.6023 5.3538 11 6 -0.3873 6.2348 6.5415 12 1 0.5931 6.1598 6.9881 13 6 -1.3828 6.9723 7.1707 14 7 -2.5759 7.0631 6.6275 15 14 -1.0250 7.8347 8.7886 16 1 0.0773 8.8109 8.5961 17 1 -2.2434 8.5476 9.2496 18 1 -0.6247 6.8304 9.8068 19 6 2.2429 2.0165 -1.1671 20 8 2.6477 3.1598 -1.1672 21 6 1.9923 1.3060 -2.4723 22 1 0.9952 0.8826 -2.5933 23 6 2.6852 1.8566 -3.7225 24 6 3.1566 0.5523 -3.0974 25 6 4.5197 0.4471 -2.3875 26 6 4.7173 -1.0898 -2.3044 27 8 4.1532 -1.5731 -3.5433 28 6 2.9661 -0.7987 -3.7971 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0644 2.7985 1.1384 35 1 2.5505 1.3452 2.0284 36 1 0.1856 2.0664 1.8408 37 1 0.6994 3.5197 0.9508 38 1 1.5627 2.8419 3.6866 39 1 -0.7818 3.4741 3.5804 40 1 -0.2670 4.9275 2.6910 41 1 -1.5304 5.6693 4.9529 42 1 -3.2709 7.5776 7.0669 43 1 2.1435 1.7958 -4.6665 44 1 3.3218 2.7329 -3.6008 45 1 5.3063 0.9098 -2.9834 46 1 4.4758 0.8889 -1.3920 47 1 4.1771 -1.5003 -1.4513 48 1 5.7772 -1.3373 -2.2434 49 1 2.0940 -1.3095 -3.3890 50 1 2.8419 -0.6483 -4.8695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715766390.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:33 Heat of formation + Delta-G solvation = -85.706562 kcal Electronic energy + Delta-G solvation = -29563.853078 eV Core-core repulsion = 25399.059871 eV Total energy + Delta-G solvation = -4164.793207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12547 -39.45948 -38.28258 -36.93027 -36.09385 -35.20404 -33.82433 -31.40922 -31.14610 -30.78833 -29.41581 -27.97614 -26.32552 -24.80183 -23.87135 -23.32232 -22.97003 -21.93458 -20.43661 -19.29507 -18.94767 -17.88606 -17.50511 -17.00186 -16.65788 -16.27902 -16.18376 -15.56828 -15.51236 -15.10245 -14.61721 -14.47773 -14.25411 -14.13651 -13.92925 -13.67186 -13.56432 -13.33593 -13.11647 -13.04139 -12.91522 -12.79984 -12.31843 -12.03901 -11.99310 -11.91800 -11.66920 -11.51967 -11.50671 -11.48682 -11.08689 -10.97282 -10.81616 -10.54951 -10.43504 -10.20668 -10.16051 -9.93135 -9.49173 -9.02535 -8.44866 -8.06125 -7.95110 -6.40685 -3.81557 2.18278 2.58000 3.18728 3.20994 3.26459 3.31112 3.41044 3.74508 3.91768 4.10640 4.12708 4.18160 4.34677 4.40354 4.44042 4.55049 4.67573 4.77086 4.88992 4.95578 4.96726 4.99220 5.12883 5.14739 5.18102 5.20782 5.24852 5.27342 5.31293 5.31645 5.36495 5.43177 5.47188 5.51389 5.63691 5.74062 5.81355 5.85752 5.96708 6.02055 6.23812 6.30610 6.31899 7.07874 7.18108 7.55989 7.64698 7.92512 8.07011 8.62245 9.18607 9.55118 10.06639 10.77006 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029566 B = 0.001748 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.791066 B =16014.597713 C =16049.165631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 N -0.607 5.607 4 C 0.117 3.883 5 C 0.047 3.953 6 N -0.666 5.666 7 C 0.054 3.946 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.932 3.068 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C 0.544 3.456 20 O -0.525 6.525 21 C -0.169 4.169 22 H 0.130 0.870 23 C -0.125 4.125 24 C -0.145 4.145 25 C -0.123 4.123 26 C 0.050 3.950 27 O -0.375 6.375 28 C 0.085 3.915 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.028 0.972 37 H 0.073 0.927 38 H 0.348 0.652 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.096 0.904 49 H 0.065 0.935 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -19.669 -21.968 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 N -0.340 5.340 4 C -0.006 4.006 5 C -0.084 4.084 6 N -0.299 5.299 7 C -0.079 4.079 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.759 3.241 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C 0.331 3.669 20 O -0.400 6.400 21 C -0.190 4.190 22 H 0.147 0.853 23 C -0.162 4.162 24 C -0.146 4.146 25 C -0.161 4.161 26 C -0.026 4.026 27 O -0.294 6.294 28 C 0.008 3.992 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.167 0.833 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.114 0.886 49 H 0.083 0.917 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.560 -18.619 -21.967 29.772 hybrid contribution -1.469 -0.071 1.082 1.826 sum 6.091 -18.689 -20.885 28.681 Atomic orbital electron populations 1.22317 0.95662 1.02479 1.02982 1.21613 0.94727 0.82200 1.03289 1.47900 1.66077 1.14134 1.05895 1.21451 0.98615 0.96820 0.83674 1.22346 0.96131 0.96712 0.93202 1.59919 1.31902 1.33129 1.04908 1.21650 0.91069 0.97977 0.97219 1.19788 0.86003 0.84639 0.86929 1.90518 1.23318 1.65706 1.67167 1.41851 1.12481 1.44369 1.21312 1.19660 0.99303 1.26374 0.97594 0.87951 1.25271 0.94901 0.97896 0.99917 1.69606 1.02846 1.41757 1.40141 0.85906 0.77590 0.79339 0.81302 1.19860 1.20986 1.19931 1.19578 0.77058 0.86034 0.84212 1.90758 1.44831 1.17422 1.87030 1.22341 0.98608 1.04745 0.93338 0.85276 1.22980 1.01745 0.96264 0.95227 1.22281 0.94871 0.94973 1.02492 1.22663 0.94928 0.97225 1.01257 1.23577 0.99662 0.92243 0.87150 1.88944 1.40690 1.58866 1.40880 1.22559 0.88555 0.87767 1.00307 0.92408 0.91363 0.91666 0.90311 0.90059 0.88650 0.90431 0.95384 0.90853 0.83280 0.93955 0.89595 0.77458 0.91829 0.87396 0.87023 0.89489 0.89964 0.91918 0.88619 0.91706 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 10.24 37.16 0.38 -0.67 16 2 C 0.10 0.64 5.98 -4.04 -0.02 0.62 16 3 N -0.61 -5.63 2.47 -173.69 -0.43 -6.06 16 4 C 0.12 1.31 5.71 -4.04 -0.02 1.29 16 5 C 0.05 0.61 6.01 -3.82 -0.02 0.59 16 6 N -0.67 -11.10 6.13 -115.05 -0.70 -11.80 16 7 C 0.05 0.98 6.17 -4.97 -0.03 0.95 16 8 C 0.44 10.66 7.82 -10.98 -0.09 10.57 16 9 O -0.58 -16.11 15.78 5.55 0.09 -16.03 16 10 N -0.56 -14.55 5.29 -10.97 -0.06 -14.61 16 11 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 12 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.79 13.05 55.50 0.72 -24.06 16 15 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 19 C 0.54 5.93 6.00 -10.99 -0.07 5.86 16 20 O -0.53 -8.04 16.04 5.55 0.09 -7.95 16 21 C -0.17 -1.28 4.29 -92.12 -0.40 -1.68 16 22 H 0.13 0.75 7.40 -51.93 -0.38 0.36 16 23 C -0.12 -0.89 9.82 -27.09 -0.27 -1.16 16 24 C -0.15 -0.97 2.19 -154.68 -0.34 -1.31 16 25 C -0.12 -0.88 6.74 -25.03 -0.17 -1.05 16 26 C 0.05 0.32 7.73 38.31 0.30 0.61 16 27 O -0.37 -3.03 11.53 -35.23 -0.41 -3.44 16 28 C 0.08 0.50 7.50 37.33 0.28 0.78 16 29 H 0.06 0.36 7.42 -51.93 -0.39 -0.03 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.49 6.26 -51.93 -0.33 0.16 16 32 H 0.08 0.40 6.67 -51.93 -0.35 0.05 16 33 H 0.08 0.43 7.89 -51.93 -0.41 0.02 16 34 H 0.10 1.31 7.42 -51.93 -0.39 0.92 16 35 H 0.08 0.73 7.89 -51.93 -0.41 0.32 16 36 H 0.03 0.33 6.26 -51.93 -0.33 0.00 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.35 5.72 8.43 -39.30 -0.33 5.39 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 41 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 42 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 44 H 0.11 0.99 7.82 -51.93 -0.41 0.58 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.68 6.93 -51.93 -0.36 0.32 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 49 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 407.73 15.07 6.14 6.14 Total: -1.00 -34.44 407.73 -8.41 -42.86 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -8.13 Total: 11.43 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -0.70 Total: 7.28 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.47 Total: -56.54 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.23 Total: -27.42 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.44 -8.41 -42.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715766390.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.851 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds