Wall clock time and date at job start Sat Apr 11 2020 05:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47176 * 2 1 4 4 C 1.46503 * 120.00134 * 89.99870 * 3 2 1 5 5 C 1.52995 * 109.47113 * 270.00477 * 4 3 2 6 6 N 1.46906 * 109.46965 * 179.97438 * 5 4 3 7 7 C 1.46899 * 110.99961 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47344 * 179.97438 * 7 6 5 9 9 O 1.21286 * 119.99327 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99929 * 179.97438 * 8 7 6 11 11 C 1.37097 * 119.99476 * 179.97438 * 10 8 7 12 12 H 1.07991 * 120.00225 * 0.02562 * 11 10 8 13 13 C 1.38952 * 119.99605 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00188 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99775 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47599 * 59.99923 * 15 13 11 17 17 H 1.48504 * 109.47125 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46821 * 299.99719 * 15 13 11 19 19 C 1.34768 * 119.99964 * 270.00251 * 3 2 1 20 20 O 1.21284 * 120.00249 * 180.02562 * 19 3 2 21 21 C 1.50705 * 120.00279 * 359.97438 * 19 3 2 22 22 H 1.08999 * 115.55637 * 54.37144 * 21 19 3 23 23 C 1.53175 * 117.52358 * 200.23414 * 21 19 3 24 24 C 1.52125 * 59.77567 * 107.42644 * 23 21 19 25 25 C 1.54043 * 121.47135 * 249.13934 * 24 23 21 26 26 C 1.55181 * 101.82687 * 195.70070 * 25 24 23 27 27 O 1.44452 * 103.63485 * 36.33383 * 26 25 24 28 28 C 1.43993 * 107.04854 * 320.42872 * 27 26 25 29 29 H 1.08997 * 109.47358 * 59.99768 * 1 2 3 30 30 H 1.09003 * 109.47156 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47250 * 299.99778 * 1 2 3 32 32 H 1.09000 * 109.47148 * 239.99452 * 2 1 3 33 33 H 1.09000 * 109.46660 * 120.00013 * 2 1 3 34 34 H 1.08992 * 109.47283 * 150.00067 * 4 3 2 35 35 H 1.09003 * 109.46902 * 29.99606 * 4 3 2 36 36 H 1.09002 * 109.47866 * 59.99917 * 5 4 3 37 37 H 1.09000 * 109.47240 * 299.99514 * 5 4 3 38 38 H 1.00892 * 111.00133 * 303.94878 * 6 5 4 39 39 H 1.09000 * 109.47082 * 59.99810 * 7 6 5 40 40 H 1.09003 * 109.47209 * 300.00011 * 7 6 5 41 41 H 0.96991 * 120.00139 * 0.02562 * 10 8 7 42 42 H 0.96996 * 119.99670 * 179.97438 * 14 13 11 43 43 H 1.09008 * 117.51709 * 214.85058 * 23 21 19 44 44 H 1.08994 * 117.52477 * 359.97438 * 23 21 19 45 45 H 1.08998 * 110.95976 * 313.84203 * 25 24 23 46 46 H 1.09006 * 110.95237 * 77.57298 * 25 24 23 47 47 H 1.09003 * 110.59491 * 277.79161 * 26 25 24 48 48 H 1.09011 * 110.58799 * 154.86948 * 26 25 24 49 49 H 1.08993 * 109.97163 * 266.94037 * 28 27 26 50 50 H 1.08991 * 109.97169 * 145.66110 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2687 5 6 0.9875 2.7930 1.7104 6 7 1.2322 3.4850 2.9829 7 6 0.0271 4.1908 3.4386 8 6 0.3157 4.8865 4.7439 9 8 1.4171 4.8030 5.2449 10 7 -0.6497 5.6023 5.3538 11 6 -0.3873 6.2348 6.5415 12 1 0.5931 6.1598 6.9881 13 6 -1.3828 6.9723 7.1707 14 7 -2.5759 7.0631 6.6275 15 14 -1.0250 7.8347 8.7886 16 1 0.0773 8.8109 8.5961 17 1 -2.2434 8.5476 9.2496 18 1 -0.6247 6.8304 9.8068 19 6 2.2429 2.0165 -1.1671 20 8 2.6477 3.1598 -1.1672 21 6 1.9923 1.3060 -2.4723 22 1 0.9952 0.8826 -2.5933 23 6 2.6852 1.8566 -3.7225 24 6 3.1566 0.5523 -3.0974 25 6 4.5197 0.4471 -2.3875 26 6 4.7173 -1.0898 -2.3044 27 8 4.1532 -1.5731 -3.5433 28 6 2.9661 -0.7987 -3.7971 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.0644 2.7985 1.1384 35 1 2.5505 1.3452 2.0284 36 1 0.1856 2.0664 1.8408 37 1 0.6994 3.5197 0.9508 38 1 1.5627 2.8419 3.6866 39 1 -0.7818 3.4741 3.5804 40 1 -0.2670 4.9275 2.6910 41 1 -1.5304 5.6693 4.9529 42 1 -3.2709 7.5776 7.0669 43 1 2.1435 1.7958 -4.6665 44 1 3.3218 2.7329 -3.6008 45 1 5.3063 0.9098 -2.9834 46 1 4.4758 0.8889 -1.3920 47 1 4.1771 -1.5003 -1.4513 48 1 5.7772 -1.3373 -2.2434 49 1 2.0940 -1.3095 -3.3890 50 1 2.8419 -0.6483 -4.8695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715766390.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:32 Heat of formation + Delta-G solvation = -111.367231 kcal Electronic energy + Delta-G solvation = -29564.965808 eV Core-core repulsion = 25399.059871 eV Total energy + Delta-G solvation = -4165.905937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80669 -40.26726 -40.04023 -37.84628 -36.79196 -36.47722 -35.79021 -33.30759 -32.10075 -31.32435 -30.43319 -28.59660 -27.77523 -26.10861 -25.01892 -23.90487 -23.62302 -22.92991 -21.20025 -20.95972 -19.95671 -19.66818 -18.26867 -17.92302 -17.53508 -17.33264 -17.09718 -16.87070 -16.50253 -16.01624 -15.97214 -15.81636 -15.48523 -15.27676 -14.83770 -14.81011 -14.49633 -14.41537 -14.04106 -13.75193 -13.60055 -13.58642 -13.49210 -13.43178 -13.28879 -12.95754 -12.79884 -12.57292 -12.47040 -12.45111 -12.31480 -12.13200 -12.03675 -11.83171 -11.52330 -11.43464 -11.18780 -10.78689 -10.56858 -10.41826 -10.04433 -9.81262 -9.39437 -8.48357 -5.97627 1.38884 1.39433 1.40988 1.52121 1.81421 2.01441 2.28326 2.58755 2.91880 2.95689 3.18088 3.18597 3.51883 3.57598 3.60723 3.74695 3.91813 3.98742 4.03496 4.12743 4.20288 4.26736 4.33315 4.38543 4.39262 4.42654 4.47751 4.54171 4.57042 4.71533 4.72198 4.75590 4.78603 4.84371 4.84844 4.92435 4.95002 4.99222 5.00848 5.06169 5.38310 5.38914 5.49644 5.81627 5.84711 6.03677 6.31044 6.38416 6.57183 7.09744 7.11169 7.52627 8.07651 8.68780 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029566 B = 0.001748 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.791066 B =16014.597713 C =16049.165631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 N -0.600 5.600 4 C 0.122 3.878 5 C 0.057 3.943 6 N -0.683 5.683 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.572 5.572 11 C -0.336 4.336 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.995 3.005 16 H -0.273 1.273 17 H -0.270 1.270 18 H -0.270 1.270 19 C 0.538 3.462 20 O -0.581 6.581 21 C -0.168 4.168 22 H 0.155 0.845 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.127 4.127 26 C 0.052 3.948 27 O -0.395 6.395 28 C 0.085 3.915 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.349 0.651 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.396 0.604 42 H 0.278 0.722 43 H 0.133 0.867 44 H 0.087 0.913 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.103 0.897 49 H 0.085 0.915 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.231 -21.766 -22.659 31.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 N -0.332 5.332 4 C -0.001 4.001 5 C -0.073 4.073 6 N -0.317 5.317 7 C -0.064 4.064 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.098 0.902 13 C -0.213 4.213 14 N -0.560 5.560 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.195 1.195 19 C 0.327 3.673 20 O -0.460 6.460 21 C -0.189 4.189 22 H 0.172 0.828 23 C -0.169 4.169 24 C -0.134 4.134 25 C -0.165 4.165 26 C -0.024 4.024 27 O -0.314 6.314 28 C 0.009 3.991 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.169 0.831 39 H 0.089 0.911 40 H 0.113 0.887 41 H 0.230 0.770 42 H 0.088 0.912 43 H 0.151 0.849 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.121 0.879 49 H 0.103 0.897 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.347 -20.765 -22.680 31.398 hybrid contribution -1.072 0.558 1.263 1.748 sum 5.275 -20.207 -21.417 29.914 Atomic orbital electron populations 1.22292 0.95135 1.03577 1.02143 1.21882 0.95062 0.80224 1.04912 1.47974 1.65306 1.15174 1.04736 1.21273 0.96747 0.96877 0.85228 1.22282 0.97721 0.96476 0.90779 1.59865 1.31528 1.34158 1.06123 1.21484 0.92540 0.98500 0.93882 1.20798 0.84948 0.83596 0.88197 1.90485 1.24858 1.66832 1.68691 1.41919 1.13052 1.44819 1.21094 1.19651 0.99028 1.28607 0.99286 0.90232 1.26082 0.94491 0.97828 1.02943 1.69669 1.03319 1.41784 1.41271 0.84961 0.77837 0.78193 0.77168 1.19846 1.19394 1.19485 1.20203 0.75943 0.85522 0.85599 1.90733 1.47423 1.19985 1.87866 1.22349 1.00072 1.04966 0.91495 0.82757 1.23046 1.01819 0.95786 0.96211 1.22263 0.93997 0.95337 1.01783 1.22650 0.95348 0.98081 1.00379 1.23639 1.00400 0.91178 0.87143 1.88926 1.41593 1.59360 1.41520 1.22706 0.88523 0.86818 1.01068 0.92557 0.89291 0.93156 0.88598 0.88591 0.91786 0.88148 0.93018 0.92806 0.83136 0.91109 0.88692 0.76968 0.91231 0.84909 0.89461 0.90114 0.91484 0.90646 0.87915 0.89742 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.24 71.98 0.74 -0.81 16 2 C 0.10 0.95 5.98 86.38 0.52 1.47 16 3 N -0.60 -10.51 2.47 -821.82 -2.03 -12.55 16 4 C 0.12 2.70 5.71 86.38 0.49 3.20 16 5 C 0.06 1.45 6.01 86.30 0.52 1.97 16 6 N -0.68 -22.59 6.13 -517.92 -3.17 -25.77 16 7 C 0.07 2.46 6.17 85.56 0.53 2.99 16 8 C 0.44 21.42 7.82 87.66 0.69 22.11 16 9 O -0.62 -35.28 15.78 -3.05 -0.05 -35.33 16 10 N -0.57 -30.01 5.29 -306.99 -1.62 -31.64 16 11 C -0.34 -19.41 9.68 84.04 0.81 -18.60 16 12 H 0.08 4.87 7.16 -2.92 -0.02 4.85 16 13 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 14 N -0.92 -50.13 13.05 21.66 0.28 -49.85 16 15 Si 1.00 43.34 29.55 68.60 2.03 45.37 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 C 0.54 11.66 6.00 87.66 0.53 12.19 16 20 O -0.58 -18.72 16.04 -3.04 -0.05 -18.77 16 21 C -0.17 -2.29 4.29 -11.77 -0.05 -2.34 16 22 H 0.16 1.30 7.40 -2.39 -0.02 1.29 16 23 C -0.13 -1.77 9.82 30.36 0.30 -1.47 16 24 C -0.13 -1.56 2.19 -52.29 -0.11 -1.67 16 25 C -0.13 -1.74 6.74 31.69 0.21 -1.53 16 26 C 0.05 0.57 7.73 72.73 0.56 1.14 16 27 O -0.39 -5.50 11.53 -148.98 -1.72 -7.22 16 28 C 0.09 0.77 7.50 72.09 0.54 1.31 16 29 H 0.06 0.53 7.42 -2.39 -0.02 0.51 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.61 6.26 -2.39 -0.01 0.60 16 32 H 0.10 0.62 6.67 -2.39 -0.02 0.61 16 33 H 0.10 0.68 7.89 -2.39 -0.02 0.66 16 34 H 0.06 1.85 7.42 -2.39 -0.02 1.83 16 35 H 0.10 1.74 7.89 -2.39 -0.02 1.72 16 36 H 0.05 1.09 6.26 -2.39 -0.01 1.08 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.35 11.36 8.43 -89.70 -0.76 10.61 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.40 19.73 7.90 -92.72 -0.73 19.00 16 42 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.09 1.63 7.82 -2.39 -0.02 1.61 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.13 6.93 -2.38 -0.02 1.11 16 47 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -77.00 407.73 -0.12 -77.12 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: -0.52 Total: 38.93 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 6.74 Total: 19.69 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -6.54 Total: -119.80 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -1.82 Total: -61.32 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -77.00 -0.12 -77.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715766390.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.243 kcal (2) G-P(sol) polarization free energy of solvation -77.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds