Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47458 * 2 1 4 4 C 1.46499 * 120.00266 * 270.00023 * 3 2 1 5 5 C 1.52998 * 109.47319 * 270.00207 * 4 3 2 6 6 N 1.46890 * 109.47369 * 180.02562 * 5 4 3 7 7 C 1.46896 * 111.00400 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47478 * 179.97438 * 7 6 5 9 9 O 1.21290 * 119.99897 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99781 * 180.02562 * 8 7 6 11 11 C 1.37096 * 119.99794 * 180.02562 * 10 8 7 12 12 H 1.08004 * 119.99917 * 359.97438 * 11 10 8 13 13 C 1.38950 * 120.00385 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99894 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00263 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46818 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.46909 * 119.99630 * 15 13 11 18 18 H 1.48493 * 109.47012 * 239.99678 * 15 13 11 19 19 C 1.34781 * 119.99874 * 90.00098 * 3 2 1 20 20 O 1.21277 * 119.99765 * 180.02562 * 19 3 2 21 21 C 1.50707 * 119.99673 * 0.02562 * 19 3 2 22 22 H 1.08997 * 115.60194 * 305.82365 * 21 19 3 23 23 C 1.53254 * 117.52792 * 159.95750 * 21 19 3 24 24 C 1.51760 * 59.68229 * 252.60564 * 23 21 19 25 25 C 1.53677 * 122.37889 * 111.72835 * 24 23 21 26 26 C 1.54373 * 103.79738 * 163.07720 * 25 24 23 27 27 O 1.43828 * 107.43470 * 2.65707 * 26 25 24 28 28 C 1.44803 * 107.12603 * 334.05569 * 27 26 25 29 29 H 1.09005 * 109.47655 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47244 * 300.00146 * 1 2 3 31 31 H 1.09003 * 109.47318 * 59.99810 * 1 2 3 32 32 H 1.09006 * 109.47244 * 239.99854 * 2 1 3 33 33 H 1.09000 * 109.47214 * 120.00705 * 2 1 3 34 34 H 1.08998 * 109.46617 * 29.99892 * 4 3 2 35 35 H 1.08998 * 109.47137 * 149.99703 * 4 3 2 36 36 H 1.09001 * 109.46738 * 300.00158 * 5 4 3 37 37 H 1.08998 * 109.47427 * 59.99674 * 5 4 3 38 38 H 1.00906 * 110.99907 * 303.95246 * 6 5 4 39 39 H 1.08997 * 109.47094 * 299.99864 * 7 6 5 40 40 H 1.09005 * 109.47006 * 59.99400 * 7 6 5 41 41 H 0.96998 * 120.00424 * 359.97438 * 10 8 7 42 42 H 0.96996 * 120.00097 * 179.97438 * 14 13 11 43 43 H 1.09001 * 117.52970 * 145.20139 * 23 21 19 44 44 H 1.09002 * 117.58267 * 359.97438 * 23 21 19 45 45 H 1.08996 * 110.56038 * 44.49903 * 25 24 23 46 46 H 1.09000 * 110.68720 * 281.71954 * 25 24 23 47 47 H 1.09004 * 109.87081 * 122.16114 * 26 25 24 48 48 H 1.09003 * 109.87375 * 243.15057 * 26 25 24 49 49 H 1.09007 * 110.53413 * 279.98662 * 28 27 26 50 50 H 1.08996 * 110.81152 * 157.04600 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.7075 1.8313 -1.7104 6 7 3.9526 2.5243 -2.9822 7 6 5.3334 2.3158 -3.4378 8 6 5.5467 3.0394 -4.7425 9 8 4.6376 3.6667 -5.2437 10 7 6.7472 2.9886 -5.3528 11 6 6.9413 3.6473 -6.5394 12 1 6.1321 4.2066 -6.9853 13 6 8.1792 3.5955 -7.1685 14 7 9.1640 2.9154 -6.6257 15 14 8.4435 4.4925 -8.7856 16 1 7.1874 5.1781 -9.1823 17 1 9.5260 5.4960 -8.6238 18 1 8.8269 3.5158 -9.8364 19 6 2.2430 2.0165 1.1672 20 8 2.6469 3.1600 1.1672 21 6 1.9923 1.3058 2.4724 22 1 0.9965 0.8793 2.5927 23 6 2.6820 1.8591 3.7241 24 6 3.1557 0.5596 3.0996 25 6 4.5201 0.4300 2.4043 26 6 4.7519 -1.0944 2.3295 27 8 3.5850 -1.7350 2.8744 28 6 2.9773 -0.7998 3.7979 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5817 1.6877 -2.0283 35 1 2.0956 3.1410 -1.1383 36 1 4.3883 2.2153 -0.9507 37 1 3.8745 0.7621 -1.8408 38 1 3.2912 2.2326 -3.6862 39 1 6.0252 2.7031 -2.6899 40 1 5.5119 1.2500 -3.5805 41 1 7.4741 2.4867 -4.9522 42 1 10.0281 2.8789 -7.0650 43 1 2.1396 1.7965 4.6675 44 1 3.3174 2.7367 3.6040 45 1 5.2994 0.9070 2.9985 46 1 4.4850 0.8614 1.4039 47 1 4.8906 -1.3976 1.2918 48 1 5.6306 -1.3648 2.9151 49 1 3.5003 -0.8122 4.7542 50 1 1.9198 -1.0245 3.9368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715766394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -86.479530 kcal Electronic energy + Delta-G solvation = -29903.154337 eV Core-core repulsion = 25738.327612 eV Total energy + Delta-G solvation = -4164.826725 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08272 -39.38658 -38.27830 -36.84872 -36.02281 -35.24256 -33.82822 -31.44107 -31.14032 -30.81692 -29.27256 -27.98644 -26.31566 -24.67855 -23.91382 -23.15716 -23.03851 -21.90279 -20.40986 -19.30070 -18.82065 -17.87641 -17.52252 -16.91396 -16.31281 -16.25121 -16.14368 -15.75734 -15.54606 -15.23440 -14.57509 -14.39798 -14.26561 -14.06849 -13.99494 -13.71414 -13.36916 -13.31510 -13.20982 -12.95848 -12.78120 -12.60385 -12.26398 -12.03853 -11.99514 -11.96653 -11.52935 -11.50441 -11.48195 -11.41622 -11.14055 -10.99747 -10.84570 -10.50946 -10.33320 -10.21611 -10.18198 -9.84364 -9.50980 -8.96248 -8.44407 -8.06550 -7.94890 -6.40723 -3.81427 2.23796 2.61543 3.16155 3.17325 3.27768 3.35346 3.54062 3.83012 3.91994 4.12352 4.15701 4.25149 4.33254 4.43153 4.50346 4.64416 4.69152 4.84110 4.93343 4.94846 5.04586 5.08492 5.12811 5.17225 5.19756 5.21464 5.27678 5.31475 5.37294 5.38363 5.43640 5.47455 5.52648 5.57621 5.67061 5.75390 5.80980 5.87448 5.96139 6.00879 6.25381 6.34020 6.36879 7.13574 7.18926 7.56608 7.65050 7.97132 8.07682 8.62367 9.19071 9.55412 10.06827 10.77199 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.002065 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.752792 B =13555.014153 C =14198.930254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.606 5.606 4 C 0.116 3.884 5 C 0.049 3.951 6 N -0.665 5.665 7 C 0.053 3.947 8 C 0.442 3.558 9 O -0.582 6.582 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.544 3.456 20 O -0.528 6.528 21 C -0.166 4.166 22 H 0.129 0.871 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.124 4.124 26 C 0.050 3.950 27 O -0.374 6.374 28 C 0.084 3.916 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.349 0.651 39 H 0.086 0.914 40 H 0.043 0.957 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.546 -12.111 23.271 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.339 5.339 4 C -0.006 4.006 5 C -0.082 4.082 6 N -0.298 5.298 7 C -0.079 4.079 8 C 0.227 3.773 9 O -0.466 6.466 10 N -0.201 5.201 11 C -0.427 4.427 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.331 3.669 20 O -0.403 6.403 21 C -0.187 4.187 22 H 0.147 0.853 23 C -0.163 4.163 24 C -0.145 4.145 25 C -0.161 4.161 26 C -0.026 4.026 27 O -0.293 6.293 28 C 0.008 3.992 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.168 0.832 39 H 0.104 0.896 40 H 0.061 0.939 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.104 0.896 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.674 -10.711 23.080 28.885 hybrid contribution 0.727 -0.718 -0.891 1.356 sum -12.947 -11.429 22.189 28.117 Atomic orbital electron populations 1.22207 0.95768 1.02392 1.02551 1.21627 0.94487 0.82145 1.03847 1.47892 1.65740 1.14431 1.05806 1.21420 0.95840 0.99481 0.83898 1.22249 0.97032 0.95679 0.93217 1.59925 1.03984 1.60961 1.04923 1.21654 0.90864 0.98202 0.97221 1.19789 0.84218 0.86385 0.86911 1.90523 1.42558 1.46434 1.67127 1.41866 1.10698 1.46148 1.21385 1.19760 0.97898 1.27493 0.97595 0.87849 1.25271 0.95169 0.97670 0.99918 1.69622 1.03145 1.41561 1.40061 0.85794 0.78532 0.78922 0.81071 1.19200 1.20729 1.20784 1.19580 0.77027 0.86010 0.84265 1.90749 1.44925 1.17575 1.87084 1.22241 0.98673 1.04578 0.93196 0.85343 1.22851 1.01925 0.96214 0.95278 1.22170 0.94785 0.95078 1.02449 1.22399 0.94998 0.96978 1.01772 1.23185 0.88646 0.91088 0.99715 1.88961 1.41398 1.39040 1.59908 1.22945 0.99133 0.84824 0.92333 0.91324 0.92554 0.92086 0.90197 0.89600 0.90449 0.88634 0.90956 0.95655 0.83226 0.89617 0.93921 0.77469 0.91937 0.87377 0.87003 0.89598 0.90170 0.89584 0.91984 0.91048 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.15 0.38 -0.66 16 2 C 0.10 0.73 5.93 -4.05 -0.02 0.71 16 3 N -0.61 -6.03 2.47 -173.69 -0.43 -6.46 16 4 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 5 C 0.05 0.65 6.01 -3.83 -0.02 0.62 16 6 N -0.67 -11.16 6.13 -115.07 -0.70 -11.87 16 7 C 0.05 0.98 6.17 -4.97 -0.03 0.95 16 8 C 0.44 10.68 7.82 -10.98 -0.09 10.59 16 9 O -0.58 -16.14 15.78 5.55 0.09 -16.05 16 10 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 11 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 12 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 15 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C 0.54 6.19 6.09 -10.98 -0.07 6.12 16 20 O -0.53 -8.24 16.04 5.56 0.09 -8.15 16 21 C -0.17 -1.32 4.30 -92.26 -0.40 -1.72 16 22 H 0.13 0.78 7.39 -51.93 -0.38 0.40 16 23 C -0.13 -0.89 9.85 -27.23 -0.27 -1.16 16 24 C -0.14 -1.02 2.15 -154.96 -0.33 -1.35 16 25 C -0.12 -0.98 6.66 -25.66 -0.17 -1.15 16 26 C 0.05 0.37 7.71 37.88 0.29 0.67 16 27 O -0.37 -3.15 11.54 -35.23 -0.41 -3.56 16 28 C 0.08 0.51 7.56 37.61 0.28 0.79 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 7.42 -51.93 -0.39 -0.05 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.09 0.59 6.68 -51.93 -0.35 0.25 16 34 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.10 1.36 7.42 -51.93 -0.39 0.98 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.11 0.99 7.83 -51.93 -0.41 0.58 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.78 7.00 -51.93 -0.36 0.42 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 411.89 15.07 6.21 6.21 Total: -1.00 -34.30 411.89 -8.57 -42.87 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -8.35 Total: 11.82 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -0.71 Total: 7.66 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.47 Total: -57.06 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.23 Total: -27.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.30 -8.57 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715766394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.608 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds