Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46907 * 2 1 4 4 O 1.42891 * 109.47476 * 120.00597 * 2 1 3 5 5 C 1.42898 * 114.00244 * 269.99571 * 4 2 1 6 6 C 1.53003 * 109.47456 * 179.97438 * 5 4 2 7 7 C 1.53000 * 117.49792 * 175.00210 * 6 5 4 8 8 C 1.53002 * 60.02940 * 107.48056 * 7 6 5 9 9 C 1.50703 * 109.46760 * 240.00897 * 2 1 3 10 10 O 1.21276 * 119.99716 * 244.99615 * 9 2 1 11 11 N 1.34774 * 120.00059 * 64.99806 * 9 2 1 12 12 C 1.46501 * 119.99836 * 180.02562 * 11 9 2 13 13 C 1.52998 * 109.47298 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.74726 * 75.76352 * 13 12 11 15 15 C 1.53507 * 113.47853 * 206.61590 * 13 12 11 16 16 C 1.53516 * 83.57781 * 140.78777 * 15 13 12 17 17 N 1.47478 * 87.93102 * 333.97626 * 16 15 13 18 18 C 1.46901 * 111.00058 * 138.69984 * 17 16 15 19 19 C 1.50700 * 109.46615 * 94.03067 * 18 17 16 20 20 O 1.21288 * 120.00716 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99649 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00187 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99675 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00574 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99450 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00477 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46854 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46887 * 120.00315 * 26 24 22 29 29 H 1.48489 * 109.47479 * 240.00494 * 26 24 22 30 30 H 1.09003 * 109.46905 * 299.99301 * 1 2 3 31 31 H 1.08994 * 109.47756 * 59.99068 * 1 2 3 32 32 H 1.09005 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.09011 * 109.46900 * 59.99911 * 5 4 2 34 34 H 1.09003 * 109.47714 * 300.00415 * 5 4 2 35 35 H 1.08999 * 115.54778 * 29.33573 * 6 5 4 36 36 H 1.09002 * 117.49833 * 214.98161 * 7 6 5 37 37 H 1.09002 * 117.49953 * 359.97438 * 7 6 5 38 38 H 1.09000 * 117.49996 * 107.50493 * 8 7 6 39 39 H 1.08999 * 117.49664 * 252.51862 * 8 7 6 40 40 H 0.96996 * 120.00230 * 359.97438 * 11 9 2 41 41 H 1.09004 * 109.47129 * 299.99178 * 12 11 9 42 42 H 1.08993 * 109.47518 * 59.99662 * 12 11 9 43 43 H 1.09000 * 114.17345 * 254.43581 * 15 13 12 44 44 H 1.08998 * 114.16900 * 27.14468 * 15 13 12 45 45 H 1.08995 * 113.47782 * 219.20936 * 16 15 13 46 46 H 1.08997 * 113.52975 * 88.75275 * 16 15 13 47 47 H 1.08996 * 109.47101 * 214.02841 * 18 17 16 48 48 H 1.08993 * 109.47085 * 334.03436 * 18 17 16 49 49 H 0.96996 * 120.00256 * 0.02562 * 21 19 18 50 50 H 0.97008 * 119.99946 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.2003 0.1827 2.2940 6 6 2.7082 -0.6411 3.4790 7 6 3.0900 0.1150 4.7531 8 6 1.8119 -0.7253 4.7170 9 6 2.0323 -0.7102 -1.2306 10 8 2.6529 -1.7465 -1.1218 11 7 1.7918 -0.1939 -2.4521 12 6 2.2795 -0.8846 -3.6484 13 6 1.8743 -0.0946 -4.8944 14 1 2.4848 0.7955 -5.0461 15 6 1.7357 -0.9643 -6.1517 16 6 0.5264 -0.0616 -6.4332 17 7 0.4251 0.1655 -4.9795 18 6 0.1247 1.5732 -4.6862 19 6 -1.3648 1.7491 -4.5404 20 8 -2.1036 0.7958 -4.6686 21 7 -1.8762 2.9661 -4.2684 22 6 -3.2313 3.1264 -4.1362 23 1 -3.8891 2.2772 -4.2496 24 6 -3.7586 4.3808 -3.8553 25 7 -2.9582 5.4139 -3.7168 26 14 -5.6050 4.5993 -3.6759 27 1 -6.2800 3.2919 -3.8769 28 1 -5.9131 5.1110 -2.3163 29 1 -6.0899 5.5684 -4.6911 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2539 0.6545 2.5589 34 1 2.9321 0.9512 2.0450 35 1 3.2958 -1.5223 3.2215 36 1 3.9286 -0.2690 5.3341 37 1 2.9798 1.1995 4.7469 38 1 1.8096 -1.6621 5.2743 39 1 0.8608 -0.1937 4.6868 40 1 1.2951 0.6347 -2.5391 41 1 3.3659 -0.9632 -3.6050 42 1 1.8446 -1.8830 -3.6942 43 1 2.5525 -0.8515 -6.8647 44 1 1.4789 -2.0040 -5.9490 45 1 -0.3271 -0.5964 -6.8497 46 1 0.7763 0.8374 -6.9967 47 1 0.6175 1.8642 -3.7586 48 1 0.4864 2.1994 -5.5017 49 1 -1.2855 3.7288 -4.1669 50 1 -3.3262 6.2898 -3.5211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716644806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -53.147389 kcal Electronic energy + Delta-G solvation = -29817.502347 eV Core-core repulsion = 25654.121012 eV Total energy + Delta-G solvation = -4163.381335 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58690 -39.69553 -38.31483 -37.80547 -36.65952 -34.52499 -33.95610 -31.79247 -31.39497 -30.65626 -28.25570 -27.27414 -25.88718 -24.37556 -23.81608 -22.78571 -22.62100 -21.04910 -20.39477 -19.67004 -19.34318 -17.96538 -17.47133 -17.38139 -16.19252 -16.12634 -15.84185 -15.48018 -15.26581 -15.16023 -14.91028 -14.54775 -14.47030 -14.15105 -13.85680 -13.74746 -13.55969 -13.01225 -12.84858 -12.59744 -12.48934 -12.30150 -11.97700 -11.85299 -11.73567 -11.65284 -11.57411 -11.36797 -11.16976 -11.12519 -10.93040 -10.74264 -10.57696 -10.56349 -10.38410 -10.26902 -9.88574 -9.56313 -9.45170 -9.02440 -8.87442 -8.27334 -8.01680 -6.47137 -3.87828 2.63478 2.76643 3.12167 3.23503 3.30508 3.44331 3.71304 3.81869 3.91958 4.17922 4.38455 4.51818 4.60514 4.65253 4.70592 4.76938 4.83100 4.93581 4.94241 4.99181 5.06513 5.13057 5.22120 5.26347 5.33483 5.33963 5.39068 5.40422 5.55816 5.59864 5.60053 5.63359 5.67301 5.74207 5.81479 5.85618 5.91816 5.94819 6.13083 6.15285 6.18890 6.35636 6.52236 6.94707 7.10707 7.50525 7.51081 8.00711 8.24928 8.56172 9.13541 9.48431 10.00661 10.70600 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007644 B = 0.003076 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.111785 B = 9101.165335 C =12219.586398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.084 0.916 4 O -0.354 6.354 5 C 0.090 3.910 6 C -0.152 4.152 7 C -0.175 4.175 8 C -0.177 4.177 9 C 0.517 3.483 10 O -0.526 6.526 11 N -0.719 5.719 12 C 0.143 3.857 13 C 0.003 3.997 14 H 0.083 0.917 15 C -0.133 4.133 16 C 0.005 3.995 17 N -0.432 5.432 18 C 0.006 3.994 19 C 0.445 3.555 20 O -0.571 6.571 21 N -0.567 5.567 22 C -0.297 4.297 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.401 0.599 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.379 -5.670 6.782 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.272 6.272 5 C 0.013 3.987 6 C -0.170 4.170 7 C -0.212 4.212 8 C -0.214 4.214 9 C 0.301 3.699 10 O -0.402 6.402 11 N -0.373 5.373 12 C 0.019 3.981 13 C -0.107 4.107 14 H 0.101 0.899 15 C -0.171 4.171 16 C -0.124 4.124 17 N -0.155 5.155 18 C -0.126 4.126 19 C 0.230 3.770 20 O -0.453 6.453 21 N -0.204 5.204 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.133 0.867 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.237 0.763 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.814 -7.433 7.257 17.284 hybrid contribution -0.389 2.190 -0.297 2.245 sum 13.425 -5.243 6.959 16.004 Atomic orbital electron populations 1.22237 0.92792 1.04133 1.03723 1.21885 0.95563 0.95996 0.85440 0.89779 1.88020 1.86521 1.33997 1.18694 1.22124 0.99172 0.91994 0.85411 1.22121 1.04111 1.02437 0.88299 1.22979 0.99335 0.98918 0.99934 1.23089 0.94996 1.02142 1.01174 1.20319 0.79703 0.85547 0.84287 1.90694 1.39858 1.23069 1.86563 1.45859 1.57917 1.28215 1.05292 1.21312 0.98552 0.96351 0.81901 1.23791 0.92357 0.99094 0.95441 0.89942 1.23157 0.98363 0.99675 0.95910 1.23754 0.98818 0.99136 0.90717 1.68872 1.13043 1.19959 1.13620 1.22580 0.97800 0.90798 1.01398 1.19609 0.88509 0.84192 0.84739 1.90547 1.60203 1.39669 1.54906 1.41884 1.08218 1.07892 1.62408 1.19731 0.82406 0.95489 1.45021 0.87913 1.25240 1.00329 0.95000 0.97335 1.69615 1.35423 1.00290 1.49069 0.85824 0.82338 0.78566 0.77800 1.19203 1.20734 1.20767 0.91212 0.90258 0.90960 0.92805 0.92786 0.86685 0.88424 0.88639 0.88594 0.88567 0.76315 0.91237 0.90686 0.90409 0.88500 0.89153 0.91370 0.90292 0.91987 0.77635 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.48 37.16 0.35 -1.82 16 2 C 0.07 0.92 3.13 -27.88 -0.09 0.84 16 3 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 4 O -0.35 -4.91 9.53 -55.09 -0.52 -5.43 16 5 C 0.09 0.94 6.03 37.16 0.22 1.16 16 6 C -0.15 -1.46 6.06 -90.58 -0.55 -2.01 16 7 C -0.17 -1.31 10.25 -26.73 -0.27 -1.59 16 8 C -0.18 -1.46 10.18 -26.69 -0.27 -1.73 16 9 C 0.52 7.70 7.18 -10.99 -0.08 7.63 16 10 O -0.53 -9.74 16.51 -14.30 -0.24 -9.98 16 11 N -0.72 -9.42 5.42 -60.30 -0.33 -9.74 16 12 C 0.14 1.74 5.81 -4.04 -0.02 1.71 16 13 C 0.00 0.04 3.23 -71.43 -0.23 -0.19 16 14 H 0.08 0.79 7.91 -51.93 -0.41 0.38 16 15 C -0.13 -1.33 8.00 -26.20 -0.21 -1.54 16 16 C 0.00 0.06 7.71 -7.54 -0.06 0.00 16 17 N -0.43 -6.50 5.39 -237.94 -1.28 -7.78 16 18 C 0.01 0.10 5.05 -4.98 -0.03 0.08 16 19 C 0.44 9.94 7.85 -10.98 -0.09 9.85 16 20 O -0.57 -15.11 16.01 5.55 0.09 -15.02 16 21 N -0.57 -13.62 5.29 -10.96 -0.06 -13.68 16 22 C -0.30 -8.00 9.68 -14.93 -0.14 -8.14 16 23 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -23.71 13.05 55.50 0.72 -22.99 16 26 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.07 0.78 7.87 -51.93 -0.41 0.37 16 31 H 0.08 1.05 7.92 -51.93 -0.41 0.64 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.51 7.60 -51.92 -0.39 0.11 16 34 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.76 8.03 -51.93 -0.42 0.34 16 40 H 0.40 4.99 6.00 -40.82 -0.25 4.75 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.02 7.87 -51.93 -0.41 0.61 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.99 7.94 -51.93 -0.41 0.57 16 45 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.07 0.81 7.42 -51.93 -0.39 0.42 16 47 H 0.08 1.08 6.27 -51.93 -0.33 0.76 16 48 H 0.06 0.89 7.30 -51.93 -0.38 0.51 16 49 H 0.39 8.92 7.90 -40.82 -0.32 8.59 16 50 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 413.72 15.07 6.23 6.23 Total: -1.00 -33.89 413.72 -10.20 -44.09 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -8.24 Total: 14.02 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -1.56 Total: 4.73 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.94 Total: -54.19 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.67 Total: -30.43 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.89 -10.20 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716644806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.058 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds