Wall clock time and date at job start Sat Apr 11 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46907 * 2 1 4 4 O 1.42891 * 109.47476 * 120.00597 * 2 1 3 5 5 C 1.42898 * 114.00244 * 269.99571 * 4 2 1 6 6 C 1.53003 * 109.47456 * 179.97438 * 5 4 2 7 7 C 1.53000 * 117.49792 * 175.00210 * 6 5 4 8 8 C 1.53002 * 60.02940 * 107.48056 * 7 6 5 9 9 C 1.50703 * 109.46760 * 240.00897 * 2 1 3 10 10 O 1.21276 * 119.99716 * 244.99615 * 9 2 1 11 11 N 1.34774 * 120.00059 * 64.99806 * 9 2 1 12 12 C 1.46501 * 119.99836 * 180.02562 * 11 9 2 13 13 C 1.52998 * 109.47298 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.74726 * 75.76352 * 13 12 11 15 15 C 1.53507 * 113.47853 * 206.61590 * 13 12 11 16 16 C 1.53516 * 83.57781 * 140.78777 * 15 13 12 17 17 N 1.47478 * 87.93102 * 333.97626 * 16 15 13 18 18 C 1.46901 * 111.00058 * 138.69984 * 17 16 15 19 19 C 1.50700 * 109.46615 * 94.03067 * 18 17 16 20 20 O 1.21288 * 120.00716 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99649 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00187 * 179.97438 * 21 19 18 23 23 H 1.08006 * 119.99675 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00574 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99450 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00477 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46854 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46887 * 120.00315 * 26 24 22 29 29 H 1.48489 * 109.47479 * 240.00494 * 26 24 22 30 30 H 1.09003 * 109.46905 * 299.99301 * 1 2 3 31 31 H 1.08994 * 109.47756 * 59.99068 * 1 2 3 32 32 H 1.09005 * 109.46907 * 179.97438 * 1 2 3 33 33 H 1.09011 * 109.46900 * 59.99911 * 5 4 2 34 34 H 1.09003 * 109.47714 * 300.00415 * 5 4 2 35 35 H 1.08999 * 115.54778 * 29.33573 * 6 5 4 36 36 H 1.09002 * 117.49833 * 214.98161 * 7 6 5 37 37 H 1.09002 * 117.49953 * 359.97438 * 7 6 5 38 38 H 1.09000 * 117.49996 * 107.50493 * 8 7 6 39 39 H 1.08999 * 117.49664 * 252.51862 * 8 7 6 40 40 H 0.96996 * 120.00230 * 359.97438 * 11 9 2 41 41 H 1.09004 * 109.47129 * 299.99178 * 12 11 9 42 42 H 1.08993 * 109.47518 * 59.99662 * 12 11 9 43 43 H 1.09000 * 114.17345 * 254.43581 * 15 13 12 44 44 H 1.08998 * 114.16900 * 27.14468 * 15 13 12 45 45 H 1.08995 * 113.47782 * 219.20936 * 16 15 13 46 46 H 1.08997 * 113.52975 * 88.75275 * 16 15 13 47 47 H 1.08996 * 109.47101 * 214.02841 * 18 17 16 48 48 H 1.08993 * 109.47085 * 334.03436 * 18 17 16 49 49 H 0.96996 * 120.00256 * 0.02562 * 21 19 18 50 50 H 0.97008 * 119.99946 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.2003 0.1827 2.2940 6 6 2.7082 -0.6411 3.4790 7 6 3.0900 0.1150 4.7531 8 6 1.8119 -0.7253 4.7170 9 6 2.0323 -0.7102 -1.2306 10 8 2.6529 -1.7465 -1.1218 11 7 1.7918 -0.1939 -2.4521 12 6 2.2795 -0.8846 -3.6484 13 6 1.8743 -0.0946 -4.8944 14 1 2.4848 0.7955 -5.0461 15 6 1.7357 -0.9643 -6.1517 16 6 0.5264 -0.0616 -6.4332 17 7 0.4251 0.1655 -4.9795 18 6 0.1247 1.5732 -4.6862 19 6 -1.3648 1.7491 -4.5404 20 8 -2.1036 0.7958 -4.6686 21 7 -1.8762 2.9661 -4.2684 22 6 -3.2313 3.1264 -4.1362 23 1 -3.8891 2.2772 -4.2496 24 6 -3.7586 4.3808 -3.8553 25 7 -2.9582 5.4139 -3.7168 26 14 -5.6050 4.5993 -3.6759 27 1 -6.2800 3.2919 -3.8769 28 1 -5.9131 5.1110 -2.3163 29 1 -6.0899 5.5684 -4.6911 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8898 32 1 -0.3633 -1.0277 -0.0005 33 1 1.2539 0.6545 2.5589 34 1 2.9321 0.9512 2.0450 35 1 3.2958 -1.5223 3.2215 36 1 3.9286 -0.2690 5.3341 37 1 2.9798 1.1995 4.7469 38 1 1.8096 -1.6621 5.2743 39 1 0.8608 -0.1937 4.6868 40 1 1.2951 0.6347 -2.5391 41 1 3.3659 -0.9632 -3.6050 42 1 1.8446 -1.8830 -3.6942 43 1 2.5525 -0.8515 -6.8647 44 1 1.4789 -2.0040 -5.9490 45 1 -0.3271 -0.5964 -6.8497 46 1 0.7763 0.8374 -6.9967 47 1 0.6175 1.8642 -3.7586 48 1 0.4864 2.1994 -5.5017 49 1 -1.2855 3.7288 -4.1669 50 1 -3.3262 6.2898 -3.5211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716644806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:48 Heat of formation + Delta-G solvation = -78.154447 kcal Electronic energy + Delta-G solvation = -29818.586734 eV Core-core repulsion = 25654.121012 eV Total energy + Delta-G solvation = -4164.465722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.67259 -40.81118 -39.60323 -39.16191 -37.48000 -35.93834 -35.64444 -33.30809 -32.78603 -31.94103 -29.28015 -28.09201 -27.52816 -25.40380 -25.34177 -23.74648 -23.25022 -21.84721 -21.44474 -21.06225 -20.61097 -19.89417 -18.50625 -18.33492 -17.66765 -17.22907 -17.03206 -16.58906 -16.39335 -16.32669 -16.17071 -15.93668 -15.62123 -15.39787 -15.17218 -14.85359 -14.74649 -14.22339 -13.99300 -13.97042 -13.60847 -13.52858 -13.30533 -13.05631 -12.91994 -12.72118 -12.59786 -12.41818 -12.39889 -12.33021 -12.13887 -12.02852 -11.95213 -11.60894 -11.48433 -11.45058 -11.34132 -10.83337 -10.45814 -10.35601 -10.12206 -9.98157 -9.70025 -8.45408 -5.92895 1.36164 1.42374 1.49085 1.55250 1.78233 2.07977 2.28866 2.63050 2.82458 2.97695 3.20837 3.35714 3.55398 3.60839 3.79666 3.81782 3.88930 3.93827 3.97022 4.04938 4.13006 4.15475 4.28034 4.30819 4.35038 4.41323 4.43825 4.51704 4.60720 4.63413 4.65737 4.71691 4.76813 4.84651 4.88517 4.99859 5.01397 5.09925 5.20963 5.22200 5.23558 5.30105 5.43097 5.47584 5.94519 6.04788 6.12980 6.44371 6.63443 7.13209 7.16307 7.59701 8.16904 8.71892 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.007644 B = 0.003076 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3662.111785 B = 9101.165335 C =12219.586398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 H 0.115 0.885 4 O -0.381 6.381 5 C 0.085 3.915 6 C -0.174 4.174 7 C -0.157 4.157 8 C -0.180 4.180 9 C 0.512 3.488 10 O -0.569 6.569 11 N -0.711 5.711 12 C 0.140 3.860 13 C 0.016 3.984 14 H 0.112 0.888 15 C -0.114 4.114 16 C -0.003 4.003 17 N -0.470 5.470 18 C 0.020 3.980 19 C 0.443 3.557 20 O -0.618 6.618 21 N -0.574 5.574 22 C -0.328 4.328 23 H 0.074 0.926 24 C -0.009 4.009 25 N -0.918 5.918 26 Si 0.986 3.014 27 H -0.277 1.277 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.405 0.595 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.793 -4.046 7.029 17.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 H 0.132 0.868 4 O -0.300 6.300 5 C 0.009 3.991 6 C -0.192 4.192 7 C -0.194 4.194 8 C -0.217 4.217 9 C 0.298 3.702 10 O -0.448 6.448 11 N -0.364 5.364 12 C 0.017 3.983 13 C -0.093 4.093 14 H 0.130 0.870 15 C -0.152 4.152 16 C -0.132 4.132 17 N -0.193 5.193 18 C -0.112 4.112 19 C 0.230 3.770 20 O -0.503 6.503 21 N -0.212 5.212 22 C -0.458 4.458 23 H 0.092 0.908 24 C -0.209 4.209 25 N -0.559 5.559 26 Si 0.810 3.190 27 H -0.202 1.202 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.242 0.758 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.123 0.877 48 H 0.105 0.895 49 H 0.230 0.770 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.246 -5.771 7.491 17.941 hybrid contribution -0.824 1.628 -0.384 1.865 sum 14.422 -4.143 7.106 16.603 Atomic orbital electron populations 1.22177 0.93013 1.02979 1.04128 1.21917 0.95201 0.97028 0.84453 0.86785 1.88002 1.86629 1.35678 1.19670 1.22324 1.00099 0.92043 0.84622 1.22112 1.05388 1.02737 0.88955 1.23078 0.99089 0.99435 0.97810 1.23175 0.95513 1.02739 1.00228 1.20783 0.79025 0.85081 0.85333 1.90667 1.42018 1.24933 1.87204 1.45867 1.57183 1.28095 1.05218 1.21409 0.99278 0.95599 0.82059 1.23849 0.90217 1.00123 0.95156 0.87004 1.23100 0.97788 0.98639 0.95709 1.23844 0.99253 1.00375 0.89733 1.68823 1.16117 1.19190 1.15161 1.22464 0.92659 0.92365 1.03707 1.20753 0.91230 0.82765 0.82216 1.90517 1.62390 1.41040 1.56377 1.41923 1.07406 1.08828 1.63059 1.19602 0.83775 0.95225 1.47160 0.90795 1.25905 1.04109 0.94380 0.96523 1.69659 1.36797 1.00582 1.48872 0.84974 0.77645 0.78053 0.78329 1.20152 1.19576 1.19743 0.89520 0.91044 0.92892 0.91794 0.91502 0.88328 0.87345 0.87444 0.88205 0.88216 0.75806 0.89718 0.92680 0.86970 0.89113 0.91794 0.89723 0.87713 0.89461 0.76956 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 9.48 71.98 0.68 -3.47 16 2 C 0.08 1.86 3.13 29.85 0.09 1.95 16 3 H 0.11 2.09 7.79 -2.38 -0.02 2.08 16 4 O -0.38 -10.49 9.53 -129.99 -1.24 -11.73 16 5 C 0.09 1.69 6.03 71.98 0.43 2.12 16 6 C -0.17 -3.25 6.06 -10.77 -0.07 -3.32 16 7 C -0.16 -2.08 10.25 30.60 0.31 -1.77 16 8 C -0.18 -2.77 10.18 30.62 0.31 -2.46 16 9 C 0.51 15.14 7.18 87.66 0.63 15.77 16 10 O -0.57 -21.42 16.51 15.97 0.26 -21.15 16 11 N -0.71 -17.83 5.42 -463.07 -2.51 -20.35 16 12 C 0.14 3.21 5.81 86.38 0.50 3.71 16 13 C 0.02 0.31 3.23 42.19 0.14 0.45 16 14 H 0.11 1.62 7.91 -2.39 -0.02 1.60 16 15 C -0.11 -2.00 8.00 30.94 0.25 -1.75 16 16 C 0.00 -0.08 7.71 83.58 0.64 0.56 16 17 N -0.47 -13.47 5.39 -906.71 -4.88 -18.36 16 18 C 0.02 0.60 5.05 85.56 0.43 1.03 16 19 C 0.44 19.90 7.85 87.66 0.69 20.59 16 20 O -0.62 -33.70 16.01 -3.05 -0.05 -33.75 16 21 N -0.57 -27.79 5.29 -306.98 -1.62 -29.41 16 22 C -0.33 -18.02 9.68 84.04 0.81 -17.21 16 23 H 0.07 4.42 7.16 -2.91 -0.02 4.40 16 24 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 25 N -0.92 -47.49 13.05 21.66 0.28 -47.21 16 26 Si 0.99 41.99 29.55 68.60 2.03 44.02 16 27 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 30 H 0.09 1.85 7.87 -2.39 -0.02 1.83 16 31 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 32 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.06 1.11 7.60 -2.38 -0.02 1.09 16 34 H 0.07 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.45 8.03 -2.39 -0.02 1.43 16 40 H 0.41 9.41 6.00 -92.71 -0.56 8.86 16 41 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.05 1.49 7.87 -2.39 -0.02 1.47 16 43 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.72 7.94 -2.39 -0.02 1.70 16 45 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.08 1.78 7.42 -2.39 -0.02 1.76 16 47 H 0.10 2.59 6.27 -2.39 -0.01 2.57 16 48 H 0.09 2.22 7.30 -2.39 -0.02 2.20 16 49 H 0.40 17.94 7.90 -92.71 -0.73 17.21 16 50 H 0.28 13.42 8.31 -92.70 -0.77 12.65 16 Total: -1.00 -76.13 413.72 -1.74 -77.86 By element: Atomic # 1 Polarization: 44.21 SS G_CDS: -0.33 Total: 43.88 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.33 Total: 16.20 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -8.74 Total: -115.33 kcal Atomic # 8 Polarization: -65.61 SS G_CDS: -1.02 Total: -66.63 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -76.13 -1.74 -77.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716644806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.292 kcal (2) G-P(sol) polarization free energy of solvation -76.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds