Wall clock time and date at job start Sat Apr 11 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47275 * 2 1 4 4 C 1.46760 * 124.34863 * 269.94565 * 3 2 1 5 5 C 1.54482 * 105.47596 * 197.03636 * 4 3 2 6 6 H 1.09000 * 110.99842 * 92.71587 * 5 4 3 7 7 C 1.50694 * 110.97178 * 216.46733 * 5 4 3 8 8 O 1.21278 * 120.00278 * 353.83119 * 7 5 4 9 9 N 1.34780 * 119.99866 * 173.83063 * 7 5 4 10 10 C 1.46926 * 120.62821 * 179.97438 * 9 7 5 11 11 C 1.53196 * 108.77812 * 233.63243 * 10 9 7 12 12 C 1.53038 * 109.31154 * 305.37072 * 11 10 9 13 13 O 1.42903 * 109.46134 * 301.35597 * 12 11 10 14 14 C 1.53001 * 109.46316 * 181.38637 * 12 11 10 15 15 N 1.46496 * 109.47205 * 184.99984 * 14 12 11 16 16 C 1.36945 * 119.99718 * 179.97438 * 15 14 12 17 17 H 1.07997 * 119.99756 * 359.97438 * 16 15 14 18 18 C 1.38805 * 119.99878 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.53040 * 109.54036 * 61.35894 * 12 11 10 25 25 C 1.46924 * 120.62989 * 0.02587 * 9 7 5 26 26 C 1.54623 * 101.76385 * 334.58888 * 5 4 3 27 27 C 1.34420 * 124.35025 * 89.97488 * 3 2 1 28 28 O 1.21278 * 124.94266 * 359.60517 * 27 3 2 29 29 H 1.09000 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47106 * 300.00628 * 1 2 3 31 31 H 1.09007 * 109.46907 * 60.00329 * 1 2 3 32 32 H 1.09002 * 109.47392 * 239.99753 * 2 1 3 33 33 H 1.09007 * 109.46907 * 119.99671 * 2 1 3 34 34 H 1.08998 * 110.24307 * 78.03717 * 4 3 2 35 35 H 1.09001 * 110.24554 * 316.03802 * 4 3 2 36 36 H 1.09003 * 109.58527 * 113.84521 * 10 9 7 37 37 H 1.09003 * 109.58877 * 353.42456 * 10 9 7 38 38 H 1.08997 * 109.49957 * 185.41986 * 11 10 9 39 39 H 1.09001 * 109.51943 * 65.33141 * 11 10 9 40 40 H 0.96696 * 114.00574 * 180.02562 * 13 12 11 41 41 H 1.08997 * 109.46922 * 64.99026 * 14 12 11 42 42 H 1.09000 * 109.46483 * 304.99845 * 14 12 11 43 43 H 0.96996 * 120.00499 * 359.97438 * 15 14 12 44 44 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 45 45 H 1.08996 * 109.49532 * 58.59171 * 24 12 11 46 46 H 1.09009 * 109.49498 * 178.68066 * 24 12 11 47 47 H 1.09001 * 109.58354 * 246.15137 * 25 9 7 48 48 H 1.08997 * 109.58849 * 6.58039 * 25 9 7 49 49 H 1.08998 * 110.48739 * 143.47168 * 26 5 4 50 50 H 1.09001 * 110.48865 * 265.98540 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2955 2.1615 -1.2117 5 6 3.1756 3.3436 -0.7484 6 1 4.2344 3.1030 -0.8437 7 6 2.8395 4.5982 -1.5126 8 8 2.0549 4.5538 -2.4363 9 7 3.4108 5.7696 -1.1694 10 6 3.0936 7.0011 -1.9053 11 6 4.4012 7.6429 -2.3797 12 6 5.3285 7.8488 -1.1797 13 8 4.6804 8.6795 -0.2143 14 6 6.6219 8.5212 -1.6444 15 7 7.5570 8.6104 -0.5202 16 6 8.7900 9.1789 -0.6988 17 1 9.0730 9.5611 -1.6684 18 6 9.6759 9.2639 0.3664 19 7 9.3311 8.7976 1.5480 20 14 11.3580 10.0388 0.1227 21 1 12.1074 10.0084 1.4044 22 1 12.1087 9.2782 -0.9084 23 1 11.1949 11.4464 -0.3214 24 6 5.6565 6.4940 -0.5479 25 6 4.3635 5.8392 -0.0531 26 6 2.7697 3.4753 0.7378 27 6 2.2707 2.0964 1.1098 28 8 2.1208 1.6946 2.2442 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.3652 2.5305 -1.6436 35 1 2.8338 1.5523 -1.9378 36 1 2.5641 7.6925 -1.2496 37 1 2.4703 6.7617 -2.7669 38 1 4.1868 8.6058 -2.8432 39 1 4.8853 6.9894 -3.1055 40 1 5.2113 8.8531 0.5750 41 1 6.3988 9.5228 -2.0120 42 1 7.0704 7.9322 -2.4443 43 1 7.3029 8.2668 0.3505 44 1 9.9503 8.8567 2.2923 45 1 6.1286 5.8510 -1.2907 46 1 6.3356 6.6394 0.2923 47 1 3.9378 6.4356 0.7539 48 1 4.5783 4.8332 0.3073 49 1 3.6326 3.7457 1.3463 50 1 1.9765 4.2141 0.8526 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724981378.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:00 Heat of formation + Delta-G solvation = -101.518528 kcal Electronic energy + Delta-G solvation = -30794.309437 eV Core-core repulsion = 26628.830572 eV Total energy + Delta-G solvation = -4165.478865 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30871 -39.99058 -38.57358 -36.58916 -35.65690 -34.38332 -34.07443 -32.06196 -31.35915 -30.40211 -29.87299 -28.08340 -26.83538 -24.72571 -23.76682 -23.43240 -22.88381 -21.59852 -20.31277 -19.71073 -19.04298 -17.79863 -17.54522 -17.05044 -16.44580 -16.08403 -15.82775 -15.37157 -15.21547 -14.99449 -14.49557 -14.39910 -14.22330 -14.07020 -13.84061 -13.69713 -13.67241 -13.37916 -13.11793 -12.92665 -12.63542 -12.59085 -12.40356 -12.24670 -11.95334 -11.92106 -11.70699 -11.54971 -11.42930 -11.13462 -11.09504 -11.06064 -10.86446 -10.37966 -10.30064 -10.20220 -9.84983 -9.72528 -9.48671 -9.06484 -8.99246 -8.67881 -7.06554 -5.88577 -3.17865 2.28154 2.36645 2.55604 2.86054 3.37843 3.42965 3.43368 3.84294 3.95931 4.27076 4.47674 4.49212 4.50763 4.60836 4.71474 4.78117 4.82151 4.95308 5.00646 5.05882 5.10673 5.11945 5.19101 5.29902 5.34116 5.36136 5.45667 5.48392 5.53323 5.54375 5.57467 5.73368 5.80521 5.81487 5.90577 5.96373 6.04306 6.19482 6.26595 6.30326 6.47535 6.62544 6.63900 6.76063 7.24901 7.60224 7.85741 7.94133 8.01197 8.30281 9.41295 9.94362 10.28510 11.34033 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002460 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.878201 B =11379.389990 C =12340.817569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.119 3.881 5 C -0.125 4.125 6 H 0.120 0.880 7 C 0.528 3.472 8 O -0.543 6.543 9 N -0.600 5.600 10 C 0.118 3.882 11 C -0.117 4.117 12 C 0.130 3.870 13 O -0.561 6.561 14 C 0.128 3.872 15 N -0.730 5.730 16 C -0.242 4.242 17 H 0.070 0.930 18 C -0.011 4.011 19 N -0.934 5.934 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.158 4.158 25 C 0.105 3.895 26 C -0.148 4.148 27 C 0.521 3.479 28 O -0.529 6.529 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.383 0.617 41 H 0.029 0.971 42 H 0.025 0.975 43 H 0.381 0.619 44 H 0.257 0.743 45 H 0.074 0.926 46 H 0.094 0.906 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.115 0.885 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.000 -14.222 -5.547 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.355 5.355 4 C -0.004 4.004 5 C -0.146 4.146 6 H 0.138 0.862 7 C 0.314 3.686 8 O -0.421 6.421 9 N -0.332 5.332 10 C -0.004 4.004 11 C -0.155 4.155 12 C 0.089 3.911 13 O -0.369 6.369 14 C 0.000 4.000 15 N -0.376 5.376 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.207 4.207 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.197 4.197 25 C -0.018 4.018 26 C -0.188 4.188 27 C 0.308 3.692 28 O -0.405 6.405 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.232 0.768 41 H 0.047 0.953 42 H 0.043 0.957 43 H 0.216 0.784 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.103 0.897 49 H 0.134 0.866 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.851 -14.465 -5.943 22.989 hybrid contribution 1.641 0.431 0.538 1.780 sum -15.209 -14.034 -5.405 21.389 Atomic orbital electron populations 1.22168 0.95688 1.02398 1.02643 1.21360 0.94502 0.80823 1.03245 1.48380 1.65935 1.13983 1.07218 1.21961 1.00402 0.91120 0.86888 1.22232 1.02858 0.94236 0.95307 0.86161 1.20004 0.80589 0.84186 0.83771 1.90692 1.35530 1.85693 1.30212 1.48091 1.43733 1.07882 1.33476 1.21566 0.97125 0.84630 0.97053 1.21849 0.95438 1.01668 0.96566 1.21287 0.92108 0.88895 0.88827 1.86369 1.46489 1.71100 1.32893 1.21324 0.88914 0.97633 0.92120 1.42318 1.14340 1.72862 1.08066 1.19151 0.91111 1.31431 0.95648 0.91214 1.24727 0.98756 1.01599 0.95625 1.69615 1.36435 1.51639 1.00555 0.86247 0.83972 0.79140 0.76696 1.21631 1.21249 1.21214 1.22552 0.96712 0.97400 1.03027 1.21966 0.89367 1.01759 0.88683 1.22528 1.04501 0.96740 0.95049 1.20766 0.76748 0.87250 0.84423 1.90740 1.53618 1.75091 1.21026 0.91352 0.92208 0.92245 0.90186 0.89903 0.89156 0.89657 0.90440 0.89269 0.89913 0.90428 0.76786 0.95296 0.95687 0.78443 0.93323 0.90733 0.88785 0.90223 0.89735 0.86648 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.24 37.16 0.38 -0.79 16 2 C 0.12 0.89 6.65 -4.04 -0.03 0.87 16 3 N -0.62 -5.57 2.93 -172.41 -0.51 -6.08 16 4 C 0.12 0.95 6.66 -3.12 -0.02 0.93 16 5 C -0.12 -1.03 2.57 -90.14 -0.23 -1.27 16 6 H 0.12 0.83 7.83 -51.93 -0.41 0.42 16 7 C 0.53 5.79 7.01 -10.99 -0.08 5.72 16 8 O -0.54 -7.49 14.98 5.56 0.08 -7.41 16 9 N -0.60 -6.57 2.97 -172.79 -0.51 -7.08 16 10 C 0.12 1.38 6.19 -3.71 -0.02 1.36 16 11 C -0.12 -1.44 5.11 -26.61 -0.14 -1.58 16 12 C 0.13 1.87 0.71 -90.58 -0.06 1.80 16 13 O -0.56 -8.41 11.70 -35.23 -0.41 -8.83 16 14 C 0.13 2.36 5.43 -4.04 -0.02 2.34 16 15 N -0.73 -16.69 5.07 -59.91 -0.30 -17.00 16 16 C -0.24 -6.42 9.99 -15.06 -0.15 -6.57 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -26.56 13.06 55.49 0.72 -25.84 16 20 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 24 C -0.16 -2.07 4.87 -26.63 -0.13 -2.20 16 25 C 0.10 1.08 5.41 -3.73 -0.02 1.06 16 26 C -0.15 -1.29 5.16 -26.74 -0.14 -1.42 16 27 C 0.52 5.81 8.02 -10.86 -0.09 5.72 16 28 O -0.53 -7.91 17.60 5.56 0.10 -7.81 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.09 0.82 7.06 -51.93 -0.37 0.46 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.94 7.81 -51.93 -0.41 0.53 16 37 H 0.09 1.06 7.01 -51.93 -0.36 0.70 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.38 5.77 8.19 45.56 0.37 6.14 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.38 8.81 5.55 -40.82 -0.23 8.58 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.09 1.42 6.53 -51.92 -0.34 1.08 16 47 H 0.08 0.84 7.81 -51.93 -0.41 0.43 16 48 H 0.08 0.71 4.37 -51.93 -0.23 0.48 16 49 H 0.12 0.89 6.67 -51.93 -0.35 0.54 16 50 H 0.11 0.96 7.89 -51.93 -0.41 0.55 16 LS Contribution 390.91 15.07 5.89 5.89 Total: -1.00 -32.71 390.91 -8.11 -40.83 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.31 Total: 11.13 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.84 Total: 5.57 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -0.60 Total: -55.99 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.23 Total: -24.04 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.71 -8.11 -40.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724981378.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.690 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds