Wall clock time and date at job start Sat Apr 11 2020 05:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47305 * 2 1 4 4 C 1.46903 * 110.99788 * 76.02910 * 3 2 1 5 5 C 1.53004 * 109.46806 * 199.54902 * 4 3 2 6 6 C 1.53003 * 109.46649 * 174.89107 * 5 4 3 7 7 N 1.46501 * 109.46780 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99873 * 180.02562 * 7 6 5 9 9 O 1.21612 * 120.00110 * 0.02562 * 8 7 6 10 10 C 1.47098 * 119.99903 * 180.02562 * 8 7 6 11 11 C 1.32091 * 118.87758 * 179.97438 * 10 8 7 12 12 C 1.50261 * 122.58001 * 180.64311 * 11 10 8 13 13 O 1.43062 * 110.00729 * 343.87704 * 12 11 10 14 14 C 1.43276 * 112.91801 * 50.93367 * 13 12 11 15 15 C 1.50422 * 118.88060 * 0.02562 * 10 8 7 16 16 C 1.46892 * 111.00264 * 199.98249 * 3 2 1 17 17 C 1.50702 * 109.47403 * 66.04740 * 16 3 2 18 18 O 1.21295 * 119.99696 * 359.97438 * 17 16 3 19 19 N 1.34775 * 120.00410 * 180.02562 * 17 16 3 20 20 C 1.37092 * 120.00137 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99877 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00287 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99663 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00185 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47325 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47136 * 120.00041 * 24 22 20 27 27 H 1.48492 * 109.47201 * 239.99917 * 24 22 20 28 28 H 1.08996 * 109.47176 * 54.86930 * 1 2 3 29 29 H 1.09001 * 109.47123 * 174.87359 * 1 2 3 30 30 H 1.09000 * 109.46740 * 294.87138 * 1 2 3 31 31 H 1.09001 * 109.47025 * 240.00033 * 2 1 3 32 32 H 1.09003 * 109.47538 * 120.00440 * 2 1 3 33 33 H 1.08996 * 109.47350 * 79.54677 * 4 3 2 34 34 H 1.08997 * 109.46951 * 319.54491 * 4 3 2 35 35 H 1.08992 * 109.47051 * 54.89460 * 5 4 3 36 36 H 1.08997 * 109.46835 * 294.88749 * 5 4 3 37 37 H 1.09006 * 109.47210 * 60.00288 * 6 5 4 38 38 H 1.08995 * 109.47613 * 300.00062 * 6 5 4 39 39 H 0.97003 * 120.00436 * 0.02562 * 7 6 5 40 40 H 1.08001 * 118.70579 * 0.37023 * 11 10 8 41 41 H 1.09003 * 109.36776 * 104.26861 * 12 11 10 42 42 H 1.08996 * 109.37186 * 223.88695 * 12 11 10 43 43 H 1.09007 * 109.63448 * 171.28296 * 14 13 12 44 44 H 1.08996 * 109.63827 * 50.66381 * 14 13 12 45 45 H 1.08996 * 109.45306 * 283.38394 * 15 10 8 46 46 H 1.09005 * 109.44905 * 43.31511 * 15 10 8 47 47 H 1.09004 * 109.47478 * 186.04857 * 16 3 2 48 48 H 1.08999 * 109.47166 * 306.04675 * 16 3 2 49 49 H 0.96997 * 119.99841 * 359.97438 * 19 17 16 50 50 H 0.97005 * 119.99794 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8830 1.9916 1.3309 5 6 1.9279 3.5157 1.2036 6 6 1.6585 4.1496 2.5699 7 7 1.7021 5.6089 2.4482 8 6 1.4924 6.3821 3.5321 9 8 1.2675 5.8683 4.6112 10 6 1.5356 7.8473 3.4098 11 6 1.3264 8.5837 4.4862 12 6 1.3374 10.0860 4.4535 13 8 1.9560 10.5448 3.2479 14 6 1.4107 9.9325 2.0730 15 6 1.8153 8.4560 2.0629 16 6 3.4103 1.4517 -0.4686 17 6 3.4712 1.0500 -1.9198 18 8 2.4560 0.7382 -2.5059 19 7 4.6537 1.0361 -2.5662 20 6 4.7090 0.6711 -3.8865 21 1 3.8049 0.3943 -4.4086 22 6 5.9281 0.6573 -4.5531 23 7 7.0280 0.9945 -3.9180 24 14 6.0036 0.1593 -6.3519 25 1 4.6376 -0.1714 -6.8317 26 1 6.5508 1.2829 -7.1541 27 1 6.8820 -1.0286 -6.5003 28 1 -0.3633 0.5913 -0.8404 29 1 -0.3633 -1.0236 -0.0918 30 1 -0.3633 0.4322 0.9324 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.7005 1.6560 1.9689 34 1 0.9320 1.6917 1.7710 35 1 1.1677 3.8436 0.4948 36 1 2.9120 3.8218 0.8488 37 1 2.4188 3.8217 3.2789 38 1 0.6745 3.8435 2.9249 39 1 1.8818 6.0187 1.5875 40 1 1.1358 8.0866 5.4258 41 1 0.3133 10.4561 4.5022 42 1 1.8968 10.4621 5.3100 43 1 1.8057 10.4267 1.1853 44 1 0.3239 10.0139 2.0883 45 1 2.8792 8.3730 1.8409 46 1 1.2433 7.9278 1.3000 47 1 3.7827 2.4701 -0.3576 48 1 4.0257 0.7734 0.1223 49 1 5.4656 1.2850 -2.0974 50 1 7.8792 0.9845 -4.3833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731306294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:09 Heat of formation + Delta-G solvation = -104.025836 kcal Electronic energy + Delta-G solvation = -28877.491473 eV Core-core repulsion = 24711.903883 eV Total energy + Delta-G solvation = -4165.587590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.55455 -39.12455 -38.77593 -37.00975 -35.43940 -34.21106 -33.86160 -32.10900 -31.45492 -31.26974 -30.22996 -27.47085 -26.42702 -25.06226 -24.22697 -23.80655 -21.90692 -21.58237 -20.71027 -19.16208 -18.79086 -17.98708 -17.86852 -16.90324 -16.39931 -16.03205 -15.95756 -15.55754 -15.47599 -15.12791 -14.80067 -14.62073 -14.41028 -14.07348 -13.96510 -13.93560 -13.70947 -13.41592 -13.20099 -12.91005 -12.69813 -12.21785 -12.12994 -12.05348 -11.86801 -11.70637 -11.50686 -11.32633 -11.29746 -11.21293 -11.12816 -10.65154 -10.54016 -10.43687 -10.35100 -10.23297 -9.94528 -9.60486 -9.48476 -9.28489 -8.41622 -7.98418 -7.89064 -6.42822 -3.83465 0.93501 2.86210 2.94041 3.15062 3.25758 3.32744 3.39975 3.89381 3.97214 4.18021 4.22133 4.24144 4.36873 4.70888 4.74543 4.80130 4.87192 4.93159 4.98621 5.05153 5.13286 5.17605 5.23429 5.24099 5.34345 5.42486 5.45526 5.52595 5.58481 5.66578 5.82549 5.83100 5.88494 5.91045 5.97630 6.00839 6.05865 6.14716 6.23466 6.28517 6.48604 6.55977 6.57831 7.21892 7.31637 7.41714 7.54352 7.92466 8.05838 8.60993 9.17447 9.53926 10.05714 10.75024 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.001994 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.585288 B =14036.789624 C =15846.256451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.058 3.942 5 C -0.128 4.128 6 C 0.120 3.880 7 N -0.722 5.722 8 C 0.551 3.449 9 O -0.545 6.545 10 C -0.167 4.167 11 C -0.114 4.114 12 C 0.084 3.916 13 O -0.376 6.376 14 C 0.059 3.941 15 C -0.122 4.122 16 C 0.043 3.957 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.022 0.978 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.403 0.597 40 H 0.136 0.864 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.933 14.818 15.857 23.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 N -0.239 5.239 4 C -0.071 4.071 5 C -0.167 4.167 6 C -0.004 4.004 7 N -0.374 5.374 8 C 0.339 3.661 9 O -0.424 6.424 10 C -0.170 4.170 11 C -0.133 4.133 12 C 0.007 3.993 13 O -0.295 6.295 14 C -0.018 4.018 15 C -0.160 4.160 16 C -0.088 4.088 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.113 0.887 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.238 0.762 40 H 0.154 0.846 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.726 14.601 15.800 24.039 hybrid contribution 1.160 -0.662 -0.427 1.403 sum -9.565 13.939 15.373 22.850 Atomic orbital electron populations 1.21681 0.95333 1.01010 1.01535 1.22152 0.95983 0.88251 1.01222 1.61575 1.19644 1.19331 1.23395 1.22002 1.01271 0.93534 0.90288 1.21792 1.03402 0.95732 0.95747 1.21369 1.02281 0.78604 0.98122 1.45946 1.72354 1.07383 1.11686 1.18404 0.76638 0.87122 0.83986 1.90788 1.49253 1.75226 1.27116 1.20883 1.06500 0.92820 0.96791 1.23724 0.93777 0.96690 0.99150 1.21637 0.99105 0.89870 0.88661 1.88207 1.61811 1.65266 1.14192 1.22668 0.98386 0.91894 0.88806 1.21108 1.03510 0.97000 0.94340 1.21904 0.89299 1.01720 0.95864 1.19757 0.84527 0.84855 0.87982 1.90509 1.34107 1.53107 1.68242 1.41888 1.07457 1.59550 1.11374 1.19739 0.95127 1.41808 0.86011 0.87877 1.25261 0.94824 0.97555 1.00399 1.69621 0.98701 1.48571 1.37467 0.85811 0.78513 0.78062 0.82026 1.19233 1.20762 1.20803 0.91509 0.92943 0.93856 0.88674 0.96017 0.94653 0.90514 0.90064 0.91116 0.91416 0.91280 0.76181 0.84635 0.90715 0.86946 0.87804 0.92369 0.89096 0.89408 0.89474 0.93569 0.77552 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.96 37.16 0.37 -1.54 16 2 C 0.05 0.82 5.18 -3.83 -0.02 0.80 16 3 N -0.52 -8.17 4.10 -236.07 -0.97 -9.13 16 4 C 0.06 0.70 4.81 -3.82 -0.02 0.68 16 5 C -0.13 -1.34 5.36 -26.73 -0.14 -1.48 16 6 C 0.12 1.20 5.67 -4.04 -0.02 1.18 16 7 N -0.72 -6.83 5.50 -61.49 -0.34 -7.17 16 8 C 0.55 6.20 7.73 -12.67 -0.10 6.10 16 9 O -0.54 -8.05 16.06 5.27 0.08 -7.97 16 10 C -0.17 -1.48 5.86 -103.09 -0.60 -2.08 16 11 C -0.11 -0.92 9.58 -36.44 -0.35 -1.26 16 12 C 0.08 0.51 7.04 35.79 0.25 0.76 16 13 O -0.38 -3.03 10.85 -35.23 -0.38 -3.41 16 14 C 0.06 0.36 6.87 37.20 0.26 0.61 16 15 C -0.12 -0.79 5.29 -27.97 -0.15 -0.94 16 16 C 0.04 0.75 5.27 -4.98 -0.03 0.73 16 17 C 0.44 10.20 7.29 -10.99 -0.08 10.12 16 18 O -0.58 -15.09 14.12 5.54 0.08 -15.01 16 19 N -0.57 -14.08 5.29 -10.96 -0.06 -14.14 16 20 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 24 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.52 6.91 -51.93 -0.36 0.16 16 31 H 0.10 1.85 5.85 -51.93 -0.30 1.55 16 32 H 0.02 0.31 8.00 -51.93 -0.42 -0.10 16 33 H 0.04 0.41 8.00 -51.93 -0.42 -0.01 16 34 H 0.08 0.85 6.58 -51.93 -0.34 0.51 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.75 6.95 -51.93 -0.36 0.39 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 2.96 6.78 -40.82 -0.28 2.68 16 40 H 0.14 1.16 7.29 -52.49 -0.38 0.78 16 41 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.44 7.31 -51.93 -0.38 0.06 16 47 H 0.09 1.35 6.71 -51.93 -0.35 1.00 16 48 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 49 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 50 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -33.71 404.16 -8.73 -42.44 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -8.06 Total: 10.26 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.87 Total: 5.81 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.64 Total: -54.05 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.22 Total: -26.39 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.71 -8.73 -42.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731306294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.586 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds