Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47582 * 2 1 4 4 O 1.42909 * 109.47087 * 240.00183 * 2 1 3 5 5 C 1.42899 * 113.99569 * 89.99762 * 4 2 1 6 6 C 1.53002 * 109.46704 * 180.02562 * 5 4 2 7 7 C 1.53003 * 117.50097 * 243.62215 * 6 5 4 8 8 C 1.53003 * 117.49886 * 174.99912 * 6 5 4 9 9 C 1.50702 * 109.47208 * 120.00571 * 2 1 3 10 10 O 1.21281 * 120.00213 * 119.99833 * 9 2 1 11 11 N 1.34778 * 119.99692 * 299.99122 * 9 2 1 12 12 C 1.46499 * 119.99954 * 179.97438 * 11 9 2 13 13 H 1.09001 * 112.84901 * 336.20601 * 12 11 9 14 14 C 1.53785 * 113.61263 * 107.50830 * 12 11 9 15 15 C 1.53777 * 87.07908 * 89.11925 * 14 12 11 16 16 H 1.09004 * 113.68890 * 270.87001 * 15 14 12 17 17 N 1.46901 * 113.61612 * 139.98213 * 15 14 12 18 18 C 1.46904 * 110.99695 * 107.49948 * 17 15 14 19 19 C 1.50706 * 109.46676 * 180.02562 * 18 17 15 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00155 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00503 * 26 24 22 30 30 C 1.53776 * 113.61794 * 205.00752 * 12 11 9 31 31 H 1.09005 * 109.46923 * 299.99289 * 1 2 3 32 32 H 1.08998 * 109.47556 * 59.99984 * 1 2 3 33 33 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47632 * 299.99759 * 5 4 2 35 35 H 1.08998 * 109.47027 * 60.00912 * 5 4 2 36 36 H 1.09004 * 115.54821 * 29.33256 * 6 5 4 37 37 H 1.09004 * 117.49509 * 0.02562 * 7 6 5 38 38 H 1.08997 * 117.49839 * 145.02081 * 7 6 5 39 39 H 1.08997 * 117.49871 * 214.97581 * 8 6 5 40 40 H 1.08998 * 117.49766 * 0.02562 * 8 6 5 41 41 H 0.97000 * 120.00098 * 0.02562 * 11 9 2 42 42 H 1.09002 * 113.60987 * 334.56829 * 14 12 11 43 43 H 1.08997 * 113.61219 * 203.66953 * 14 12 11 44 44 H 1.00889 * 111.00472 * 231.45408 * 17 15 14 45 45 H 1.08996 * 109.47230 * 60.00720 * 18 17 15 46 46 H 1.09002 * 109.47146 * 299.99952 * 18 17 15 47 47 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 48 48 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 49 49 H 1.08997 * 113.62095 * 156.34246 * 30 12 11 50 50 H 1.09004 * 113.61239 * 25.42956 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6407 -3.4793 7 6 4.1046 -0.3207 -4.0153 8 6 2.8664 0.0763 -4.8216 9 6 2.0323 -0.7105 1.2304 10 8 2.7296 -1.6966 1.1191 11 7 1.7068 -0.2500 2.4545 12 6 2.1947 -0.9410 3.6507 13 1 2.4376 -1.9874 3.4655 14 6 3.2977 -0.1736 4.3986 15 6 2.1731 0.5146 5.1899 16 1 1.8034 1.4270 4.7220 17 7 2.4785 0.6885 6.6163 18 6 2.7547 2.0974 6.9275 19 6 3.0636 2.2361 8.3961 20 8 3.0550 1.2576 9.1127 21 7 3.3504 3.4473 8.9128 22 6 3.6309 3.5736 10.2488 23 1 3.6224 2.7024 10.8871 24 6 3.9261 4.8225 10.7817 25 7 3.9358 5.8826 10.0052 26 14 4.3090 4.9944 12.6020 27 1 4.5888 6.4185 12.9166 28 1 3.1449 4.5304 13.3987 29 1 5.4984 4.1710 12.9375 30 6 1.3118 -0.7238 4.8908 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2537 0.6547 -2.5589 35 1 2.9319 0.9513 -2.0450 36 1 2.3868 -1.6822 -3.4998 37 1 4.6620 0.4765 -3.5232 38 1 4.7031 -1.1517 -4.3884 39 1 2.6503 -0.4937 -5.7252 40 1 2.6094 1.1348 -4.8602 41 1 1.1489 0.5385 2.5436 42 1 3.8640 0.5070 3.7627 43 1 3.9352 -0.8116 5.0107 44 1 1.7314 0.3307 7.1923 45 1 1.8818 2.7018 6.6809 46 1 3.6094 2.4378 6.3431 47 1 3.3576 4.2298 8.3397 48 1 3.7374 5.7932 9.0599 49 1 1.4063 -1.5120 5.6377 50 1 0.2748 -0.4872 4.6525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752619321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -69.459715 kcal Electronic energy + Delta-G solvation = -28358.431853 eV Core-core repulsion = 24194.343163 eV Total energy + Delta-G solvation = -4164.088690 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66379 -39.33149 -38.48020 -38.04416 -36.86163 -34.79714 -34.14497 -32.97458 -31.36676 -31.01732 -27.59588 -26.92337 -25.86653 -24.99338 -24.02414 -22.85896 -22.78054 -21.36442 -20.87653 -19.77883 -19.42974 -17.92992 -17.77265 -17.41829 -16.72920 -16.28493 -16.22689 -15.69408 -15.34365 -15.10537 -15.04090 -14.75629 -14.40860 -14.35135 -14.07991 -13.72020 -13.51496 -13.49349 -13.13572 -12.86689 -12.67768 -12.57249 -12.18500 -12.08728 -12.01938 -11.96467 -11.53136 -11.48525 -11.22573 -10.95850 -10.94980 -10.80603 -10.68776 -10.60274 -10.22985 -10.21327 -9.87838 -9.76412 -9.56010 -9.31024 -8.52284 -8.17162 -8.04446 -6.76842 -3.89964 2.28165 2.41633 3.18981 3.30249 3.34358 3.48151 3.54587 3.82863 4.09760 4.19399 4.30852 4.33534 4.35062 4.36864 4.39140 4.42491 4.51228 4.60251 4.77754 4.80053 4.87898 4.90512 5.04888 5.05679 5.11138 5.16307 5.19105 5.23222 5.34579 5.42799 5.54697 5.57638 5.62077 5.63089 5.68623 5.71680 5.76529 5.80199 5.93019 6.00468 6.03437 6.35159 6.62825 7.14455 7.17876 7.56078 7.79499 7.92131 8.06713 8.58603 8.78443 9.46110 9.86221 10.66600 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.001529 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.427497 B =18310.924697 C =19024.328217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.088 0.912 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.153 4.153 7 C -0.176 4.176 8 C -0.174 4.174 9 C 0.516 3.484 10 O -0.515 6.515 11 N -0.711 5.711 12 C 0.120 3.880 13 H 0.106 0.894 14 C -0.135 4.135 15 C 0.059 3.941 16 H 0.068 0.932 17 N -0.655 5.655 18 C 0.050 3.950 19 C 0.442 3.558 20 O -0.576 6.576 21 N -0.576 5.576 22 C -0.383 4.383 23 H 0.099 0.901 24 C -0.009 4.009 25 N -0.901 5.901 26 Si 1.091 2.909 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.283 1.283 30 C -0.147 4.147 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.115 0.885 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.399 0.601 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.351 0.649 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.375 0.625 48 H 0.261 0.739 49 H 0.105 0.895 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.146 -7.760 -27.779 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.105 0.895 4 O -0.271 6.271 5 C 0.014 3.986 6 C -0.171 4.171 7 C -0.213 4.213 8 C -0.211 4.211 9 C 0.301 3.699 10 O -0.389 6.389 11 N -0.364 5.364 12 C 0.014 3.986 13 H 0.124 0.876 14 C -0.175 4.175 15 C -0.052 4.052 16 H 0.086 0.914 17 N -0.287 5.287 18 C -0.083 4.083 19 C 0.228 3.772 20 O -0.460 6.460 21 N -0.214 5.214 22 C -0.512 4.512 23 H 0.117 0.883 24 C -0.212 4.212 25 N -0.540 5.540 26 Si 0.917 3.083 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.210 1.210 30 C -0.185 4.185 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.133 0.867 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.234 0.766 42 H 0.085 0.915 43 H 0.120 0.880 44 H 0.172 0.828 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.208 0.792 48 H 0.072 0.928 49 H 0.123 0.877 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.531 -8.413 -26.238 28.318 hybrid contribution -1.594 0.560 -1.618 2.339 sum -8.125 -7.854 -27.856 30.061 Atomic orbital electron populations 1.22254 0.93441 1.03996 1.03210 1.21874 0.95088 0.96341 0.85720 0.89467 1.88048 1.86461 1.33939 1.18686 1.22134 0.99283 0.91964 0.85187 1.22099 1.00702 1.01099 0.93249 1.23084 0.90817 1.03677 1.03732 1.22986 1.02550 1.01085 0.94439 1.20355 0.80444 0.84937 0.84143 1.90741 1.36317 1.25452 1.86344 1.45636 1.53863 1.31983 1.04897 1.21771 0.95840 0.97802 0.83190 0.87573 1.23555 0.96806 0.99550 0.97599 1.23117 0.96202 0.96160 0.89714 0.91372 1.60205 1.48325 1.17298 1.02885 1.21731 1.00567 0.89605 0.96357 1.19751 0.84639 0.84053 0.88739 1.90529 1.56799 1.37518 1.61134 1.41939 1.62222 1.07253 1.09976 1.20543 1.48173 0.98034 0.84448 0.88318 1.26513 0.95836 0.90649 1.08156 1.70907 1.46299 1.30403 1.06430 0.83131 0.76906 0.76294 0.71941 1.20415 1.21016 1.20971 1.23609 0.98296 0.99296 0.97343 0.90889 0.91098 0.90910 0.92626 0.92935 0.86680 0.88596 0.88465 0.88317 0.88650 0.76616 0.91545 0.88004 0.82823 0.94021 0.89739 0.79182 0.92812 0.87662 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 9.42 37.15 0.35 -0.57 16 2 C 0.07 0.56 3.14 -27.89 -0.09 0.47 16 3 H 0.09 0.48 7.79 -51.93 -0.40 0.08 16 4 O -0.35 -3.57 9.52 -55.14 -0.52 -4.09 16 5 C 0.09 0.64 6.03 37.16 0.22 0.87 16 6 C -0.15 -1.08 6.06 -90.62 -0.55 -1.63 16 7 C -0.18 -1.11 10.18 -26.73 -0.27 -1.38 16 8 C -0.17 -0.90 10.25 -26.73 -0.27 -1.17 16 9 C 0.52 5.51 7.23 -10.98 -0.08 5.43 16 10 O -0.51 -7.97 16.10 -14.35 -0.23 -8.20 16 11 N -0.71 -5.93 5.16 -53.02 -0.27 -6.21 16 12 C 0.12 1.18 4.32 -67.12 -0.29 0.89 16 13 H 0.11 1.21 7.46 -51.93 -0.39 0.82 16 14 C -0.14 -1.54 7.68 -25.92 -0.20 -1.73 16 15 C 0.06 0.65 4.02 -66.90 -0.27 0.38 16 16 H 0.07 0.67 7.87 -51.93 -0.41 0.27 16 17 N -0.65 -10.03 6.18 -107.12 -0.66 -10.69 16 18 C 0.05 0.86 6.01 -4.97 -0.03 0.83 16 19 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 20 O -0.58 -15.71 15.78 5.55 0.09 -15.63 16 21 N -0.58 -14.43 5.28 -10.96 -0.06 -14.49 16 22 C -0.38 -10.77 9.68 -14.93 -0.14 -10.91 16 23 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 24 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 25 N -0.90 -25.15 13.68 55.50 0.76 -24.39 16 26 Si 1.09 24.21 29.92 -169.99 -5.09 19.13 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 29 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 30 C -0.15 -1.34 7.40 -25.92 -0.19 -1.53 16 31 H 0.07 0.26 7.56 -51.93 -0.39 -0.13 16 32 H 0.07 0.30 7.87 -51.93 -0.41 -0.11 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.30 7.87 -51.93 -0.41 -0.11 16 35 H 0.05 0.34 7.82 -51.93 -0.41 -0.07 16 36 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.40 2.23 8.12 -40.82 -0.33 1.90 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.35 5.53 8.25 -39.30 -0.32 5.21 16 45 H 0.04 0.63 8.13 -51.93 -0.42 0.20 16 46 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.38 8.65 6.73 -40.82 -0.27 8.38 16 48 H 0.26 6.98 6.78 -40.82 -0.28 6.70 16 49 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 416.54 15.07 6.28 6.28 Total: -1.00 -36.12 416.54 -9.97 -46.09 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -8.26 Total: 12.31 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.99 Total: -0.11 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.23 Total: -55.78 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.67 Total: -27.91 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -36.12 -9.97 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752619321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.368 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds