Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47582 * 2 1 4 4 O 1.42909 * 109.47087 * 240.00183 * 2 1 3 5 5 C 1.42899 * 113.99569 * 89.99762 * 4 2 1 6 6 C 1.53002 * 109.46704 * 180.02562 * 5 4 2 7 7 C 1.53003 * 117.50097 * 243.62215 * 6 5 4 8 8 C 1.53003 * 117.49886 * 174.99912 * 6 5 4 9 9 C 1.50702 * 109.47208 * 120.00571 * 2 1 3 10 10 O 1.21281 * 120.00213 * 119.99833 * 9 2 1 11 11 N 1.34778 * 119.99692 * 299.99122 * 9 2 1 12 12 C 1.46499 * 119.99954 * 179.97438 * 11 9 2 13 13 H 1.09001 * 112.84901 * 336.20601 * 12 11 9 14 14 C 1.53785 * 113.61263 * 107.50830 * 12 11 9 15 15 C 1.53777 * 87.07908 * 89.11925 * 14 12 11 16 16 H 1.09004 * 113.68890 * 270.87001 * 15 14 12 17 17 N 1.46901 * 113.61612 * 139.98213 * 15 14 12 18 18 C 1.46904 * 110.99695 * 107.49948 * 17 15 14 19 19 C 1.50706 * 109.46676 * 180.02562 * 18 17 15 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47057 * 179.97438 * 26 24 22 28 28 H 1.48500 * 109.47389 * 300.00155 * 26 24 22 29 29 H 1.48504 * 109.47102 * 60.00503 * 26 24 22 30 30 C 1.53776 * 113.61794 * 205.00752 * 12 11 9 31 31 H 1.09005 * 109.46923 * 299.99289 * 1 2 3 32 32 H 1.08998 * 109.47556 * 59.99984 * 1 2 3 33 33 H 1.09000 * 109.47075 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47632 * 299.99759 * 5 4 2 35 35 H 1.08998 * 109.47027 * 60.00912 * 5 4 2 36 36 H 1.09004 * 115.54821 * 29.33256 * 6 5 4 37 37 H 1.09004 * 117.49509 * 0.02562 * 7 6 5 38 38 H 1.08997 * 117.49839 * 145.02081 * 7 6 5 39 39 H 1.08997 * 117.49871 * 214.97581 * 8 6 5 40 40 H 1.08998 * 117.49766 * 0.02562 * 8 6 5 41 41 H 0.97000 * 120.00098 * 0.02562 * 11 9 2 42 42 H 1.09002 * 113.60987 * 334.56829 * 14 12 11 43 43 H 1.08997 * 113.61219 * 203.66953 * 14 12 11 44 44 H 1.00889 * 111.00472 * 231.45408 * 17 15 14 45 45 H 1.08996 * 109.47230 * 60.00720 * 18 17 15 46 46 H 1.09002 * 109.47146 * 299.99952 * 18 17 15 47 47 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 48 48 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 49 49 H 1.08997 * 113.62095 * 156.34246 * 30 12 11 50 50 H 1.09004 * 113.61239 * 25.42956 * 30 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6407 -3.4793 7 6 4.1046 -0.3207 -4.0153 8 6 2.8664 0.0763 -4.8216 9 6 2.0323 -0.7105 1.2304 10 8 2.7296 -1.6966 1.1191 11 7 1.7068 -0.2500 2.4545 12 6 2.1947 -0.9410 3.6507 13 1 2.4376 -1.9874 3.4655 14 6 3.2977 -0.1736 4.3986 15 6 2.1731 0.5146 5.1899 16 1 1.8034 1.4270 4.7220 17 7 2.4785 0.6885 6.6163 18 6 2.7547 2.0974 6.9275 19 6 3.0636 2.2361 8.3961 20 8 3.0550 1.2576 9.1127 21 7 3.3504 3.4473 8.9128 22 6 3.6309 3.5736 10.2488 23 1 3.6224 2.7024 10.8871 24 6 3.9261 4.8225 10.7817 25 7 3.9358 5.8826 10.0052 26 14 4.3090 4.9944 12.6020 27 1 4.5888 6.4185 12.9166 28 1 3.1449 4.5304 13.3987 29 1 5.4984 4.1710 12.9375 30 6 1.3118 -0.7238 4.8908 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.2537 0.6547 -2.5589 35 1 2.9319 0.9513 -2.0450 36 1 2.3868 -1.6822 -3.4998 37 1 4.6620 0.4765 -3.5232 38 1 4.7031 -1.1517 -4.3884 39 1 2.6503 -0.4937 -5.7252 40 1 2.6094 1.1348 -4.8602 41 1 1.1489 0.5385 2.5436 42 1 3.8640 0.5070 3.7627 43 1 3.9352 -0.8116 5.0107 44 1 1.7314 0.3307 7.1923 45 1 1.8818 2.7018 6.6809 46 1 3.6094 2.4378 6.3431 47 1 3.3576 4.2298 8.3397 48 1 3.7374 5.7932 9.0599 49 1 1.4063 -1.5120 5.6377 50 1 0.2748 -0.4872 4.6525 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752619321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -96.123721 kcal Electronic energy + Delta-G solvation = -28359.588091 eV Core-core repulsion = 24194.343163 eV Total energy + Delta-G solvation = -4165.244928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48780 -40.41176 -39.83970 -38.94667 -37.44875 -36.49831 -35.54274 -33.97323 -33.09143 -31.94371 -28.39277 -28.09124 -26.72626 -26.20591 -25.33748 -23.78698 -23.27754 -21.96391 -21.62228 -21.42068 -20.41019 -19.97291 -18.47072 -18.21573 -18.03588 -17.27264 -16.88937 -16.77765 -16.66751 -16.31485 -15.92973 -15.71684 -15.56417 -15.46520 -15.29645 -14.92154 -14.69436 -14.38133 -13.96558 -13.71189 -13.43640 -13.42364 -13.29809 -13.24291 -13.11762 -12.78940 -12.64139 -12.60060 -12.40150 -12.02822 -11.91597 -11.89082 -11.57336 -11.51953 -11.51595 -11.42996 -11.31028 -10.91976 -10.42240 -10.38971 -10.12602 -10.10792 -9.36096 -8.92581 -6.06566 1.49299 1.52862 1.55180 1.74318 1.83066 2.01139 2.40984 2.66052 2.84155 2.97654 3.16956 3.39407 3.51933 3.56511 3.61128 3.82711 3.88563 3.91708 3.94537 4.05351 4.08775 4.12739 4.13848 4.31509 4.36058 4.44411 4.48695 4.52379 4.65350 4.69760 4.75656 4.76867 4.82623 4.83673 4.96131 4.99173 5.03992 5.09658 5.19420 5.19591 5.22622 5.49455 5.61369 5.95671 6.06949 6.08225 6.37967 6.50597 6.58551 6.74904 7.18087 7.44582 7.93091 8.55285 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.001529 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.427497 B =18310.924697 C =19024.328217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.071 3.929 3 H 0.115 0.885 4 O -0.388 6.388 5 C 0.089 3.911 6 C -0.172 4.172 7 C -0.188 4.188 8 C -0.155 4.155 9 C 0.512 3.488 10 O -0.573 6.573 11 N -0.693 5.693 12 C 0.125 3.875 13 H 0.087 0.913 14 C -0.140 4.140 15 C 0.061 3.939 16 H 0.094 0.906 17 N -0.673 5.673 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.619 6.619 21 N -0.586 5.586 22 C -0.412 4.412 23 H 0.072 0.928 24 C -0.041 4.041 25 N -0.916 5.916 26 Si 1.133 2.867 27 H -0.272 1.272 28 H -0.272 1.272 29 H -0.275 1.275 30 C -0.131 4.131 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.417 0.583 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.348 0.652 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.385 0.615 48 H 0.260 0.740 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 -6.068 -29.050 31.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 H 0.133 0.867 4 O -0.307 6.307 5 C 0.013 3.987 6 C -0.191 4.191 7 C -0.224 4.224 8 C -0.192 4.192 9 C 0.299 3.701 10 O -0.451 6.451 11 N -0.347 5.347 12 C 0.019 3.981 13 H 0.105 0.895 14 C -0.179 4.179 15 C -0.048 4.048 16 H 0.112 0.888 17 N -0.306 5.306 18 C -0.066 4.066 19 C 0.228 3.772 20 O -0.504 6.504 21 N -0.226 5.226 22 C -0.541 4.541 23 H 0.090 0.910 24 C -0.239 4.239 25 N -0.556 5.556 26 Si 0.953 3.047 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.200 1.200 30 C -0.170 4.170 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.168 0.832 45 H 0.091 0.909 46 H 0.118 0.882 47 H 0.219 0.781 48 H 0.070 0.930 49 H 0.117 0.883 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.094 -6.682 -27.546 29.478 hybrid contribution -1.100 -0.045 -1.292 1.697 sum -9.193 -6.727 -28.837 31.006 Atomic orbital electron populations 1.22252 0.91328 1.03513 1.05203 1.22040 0.96526 0.96723 0.83663 0.86729 1.88015 1.86919 1.35808 1.19929 1.22275 1.00492 0.91664 0.84252 1.22143 1.01436 1.00781 0.94700 1.23157 0.90978 1.03878 1.04434 1.23068 1.00690 1.01764 0.93638 1.21042 0.79396 0.84253 0.85449 1.90717 1.39071 1.28129 1.87181 1.45475 1.53252 1.32102 1.03837 1.21574 0.95762 0.96825 0.83970 0.89525 1.23530 0.97122 0.99560 0.97734 1.23238 0.96485 0.97884 0.87199 0.88794 1.60163 1.48999 1.16196 1.05202 1.21597 1.02400 0.91396 0.91242 1.20963 0.82234 0.82735 0.91307 1.90500 1.57996 1.38797 1.63145 1.41993 1.62940 1.08351 1.09292 1.20529 1.50012 0.97645 0.85947 0.90966 1.27792 0.94757 0.89965 1.11402 1.70975 1.47105 1.30750 1.06726 0.82640 0.77476 0.76690 0.67939 1.19696 1.19717 1.20031 1.23505 0.99279 0.97985 0.96192 0.88540 0.89445 0.92618 0.90557 0.92333 0.88282 0.88421 0.88674 0.87500 0.87205 0.74476 0.91680 0.89969 0.83200 0.90889 0.88235 0.78097 0.92958 0.88265 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 9.42 71.98 0.68 -0.65 16 2 C 0.07 0.98 3.14 29.85 0.09 1.07 16 3 H 0.12 0.91 7.79 -2.39 -0.02 0.89 16 4 O -0.39 -7.62 9.52 -129.94 -1.24 -8.85 16 5 C 0.09 1.14 6.03 71.98 0.43 1.57 16 6 C -0.17 -2.35 6.06 -10.79 -0.07 -2.42 16 7 C -0.19 -2.28 10.18 30.60 0.31 -1.97 16 8 C -0.15 -1.36 10.25 30.60 0.31 -1.05 16 9 C 0.51 10.49 7.23 87.66 0.63 11.12 16 10 O -0.57 -18.25 16.10 16.00 0.26 -17.99 16 11 N -0.69 -10.11 5.16 -440.03 -2.27 -12.38 16 12 C 0.13 2.33 4.32 45.52 0.20 2.52 16 13 H 0.09 2.02 7.46 -2.39 -0.02 2.00 16 14 C -0.14 -3.03 7.68 31.12 0.24 -2.79 16 15 C 0.06 1.21 4.02 45.44 0.18 1.39 16 16 H 0.09 1.43 7.87 -2.38 -0.02 1.41 16 17 N -0.67 -19.48 6.18 -492.83 -3.05 -22.53 16 18 C 0.07 2.11 6.01 85.56 0.51 2.62 16 19 C 0.44 20.49 7.82 87.66 0.69 21.18 16 20 O -0.62 -34.19 15.78 -3.05 -0.05 -34.23 16 21 N -0.59 -29.42 5.28 -306.98 -1.62 -31.04 16 22 C -0.41 -23.48 9.68 84.04 0.81 -22.67 16 23 H 0.07 4.43 7.16 -2.91 -0.02 4.41 16 24 C -0.04 -2.20 5.50 84.93 0.47 -1.74 16 25 N -0.92 -50.63 13.68 21.66 0.30 -50.33 16 26 Si 1.13 48.25 29.92 68.60 2.05 50.30 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 28 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 29 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 30 C -0.13 -2.08 7.40 31.12 0.23 -1.85 16 31 H 0.10 0.30 7.56 -2.38 -0.02 0.28 16 32 H 0.09 0.44 7.87 -2.39 -0.02 0.42 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.62 7.87 -2.39 -0.02 0.60 16 35 H 0.06 0.65 7.82 -2.39 -0.02 0.63 16 36 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.10 1.12 8.03 -2.39 -0.02 1.10 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.42 3.09 8.12 -92.71 -0.75 2.34 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.35 10.49 8.25 -89.70 -0.74 9.75 16 45 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 46 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 47 H 0.38 17.57 6.73 -92.71 -0.62 16.94 16 48 H 0.26 13.80 6.78 -92.71 -0.63 13.17 16 49 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -81.32 416.54 -0.89 -82.21 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -1.01 Total: 38.50 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.73 Total: 6.34 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -6.64 Total: -116.28 kcal Atomic # 8 Polarization: -60.05 SS G_CDS: -1.03 Total: -61.08 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.05 Total: 50.30 kcal Total: -81.32 -0.89 -82.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752619321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.911 kcal (2) G-P(sol) polarization free energy of solvation -81.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds