Wall clock time and date at job start Sat Apr 11 2020 05:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99880 * 2 1 4 4 H 1.09001 * 109.46815 * 30.00070 * 3 2 1 5 5 C 1.52999 * 109.47066 * 269.99627 * 3 2 1 6 6 C 1.50697 * 109.47232 * 149.99508 * 3 2 1 7 7 O 1.21282 * 119.99887 * 5.00346 * 6 3 2 8 8 N 1.34775 * 120.00139 * 184.99794 * 6 3 2 9 9 C 1.46500 * 120.00154 * 180.02562 * 8 6 3 10 10 C 1.53141 * 109.38488 * 119.88955 * 9 8 6 11 11 C 1.53710 * 108.88130 * 66.04081 * 10 9 8 12 12 H 1.09003 * 112.12394 * 187.72089 * 11 10 9 13 13 C 1.54604 * 107.81317 * 312.37669 * 11 10 9 14 14 C 1.54280 * 104.84131 * 88.56353 * 13 11 10 15 15 C 1.54609 * 104.84583 * 0.02562 * 14 13 11 16 16 H 1.08996 * 112.73100 * 147.14700 * 15 14 13 17 17 C 1.53131 * 109.42941 * 240.12828 * 9 8 6 18 18 N 1.48711 * 107.24119 * 64.09275 * 11 10 9 19 19 C 1.46903 * 111.00049 * 168.34150 * 18 11 10 20 20 C 1.50694 * 109.46894 * 284.46303 * 19 18 11 21 21 O 1.21287 * 120.00480 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99851 * 180.02562 * 20 19 18 23 23 C 1.37105 * 120.00270 * 180.02562 * 22 20 19 24 24 H 1.08001 * 119.99465 * 359.97438 * 23 22 20 25 25 C 1.38943 * 120.00424 * 180.02562 * 23 22 20 26 26 N 1.31418 * 120.00054 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00385 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47276 * 179.97438 * 27 25 23 29 29 H 1.48505 * 109.46750 * 299.99850 * 27 25 23 30 30 H 1.48496 * 109.47139 * 59.99138 * 27 25 23 31 31 H 1.09001 * 109.47407 * 300.00119 * 1 2 3 32 32 H 1.09004 * 109.47039 * 60.00388 * 1 2 3 33 33 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 34 34 H 1.08992 * 109.47113 * 299.99966 * 5 3 2 35 35 H 1.09007 * 109.46897 * 60.00010 * 5 3 2 36 36 H 1.08993 * 109.47158 * 179.97438 * 5 3 2 37 37 H 0.96998 * 119.99759 * 0.02562 * 8 6 3 38 38 H 1.09003 * 109.42708 * 0.02562 * 9 8 6 39 39 H 1.08999 * 109.56560 * 185.86144 * 10 9 8 40 40 H 1.08998 * 109.56697 * 306.09978 * 10 9 8 41 41 H 1.09001 * 110.36708 * 207.40438 * 13 11 10 42 42 H 1.08997 * 110.36686 * 329.61437 * 13 11 10 43 43 H 1.09003 * 110.36775 * 241.15459 * 14 13 11 44 44 H 1.09006 * 110.36643 * 118.84029 * 14 13 11 45 45 H 1.09007 * 109.56963 * 174.16499 * 17 9 8 46 46 H 1.08999 * 109.56723 * 53.81184 * 17 9 8 47 47 H 1.09001 * 109.46885 * 164.46549 * 19 18 11 48 48 H 1.08997 * 109.47207 * 44.46274 * 19 18 11 49 49 H 0.97001 * 120.00063 * 359.97438 * 22 20 19 50 50 H 0.97001 * 119.99369 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2177 1.7714 -1.4425 6 6 3.3385 1.2640 0.7105 7 8 3.7896 0.2046 1.0915 8 7 4.0253 2.4041 0.9224 9 6 5.3169 2.3638 1.6127 10 6 6.4048 2.9177 0.6881 11 6 6.1372 4.4116 0.4443 12 1 6.8007 4.8292 -0.3130 13 6 4.6425 4.5714 0.0827 14 6 3.9254 4.7517 1.4367 15 6 5.0519 4.6851 2.4936 16 1 4.8560 5.3187 3.3585 17 6 5.2405 3.2104 2.8863 18 7 6.2723 5.1030 1.7539 19 6 6.3071 6.5611 1.5783 20 6 7.6577 6.9713 1.0506 21 8 8.5075 6.1317 0.8409 22 7 7.9214 8.2712 0.8116 23 6 9.1500 8.6445 0.3309 24 1 9.9066 7.8968 0.1443 25 6 9.4220 9.9847 0.0850 26 7 8.5015 10.8945 0.3126 27 14 11.0961 10.4932 -0.5691 28 1 11.1316 11.9672 -0.7461 29 1 12.1492 10.0845 0.3949 30 1 11.3384 9.8321 -1.8765 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 2.8830 1.0775 -1.9562 35 1 1.2568 1.8014 -1.9564 36 1 2.6606 2.7673 -1.4425 37 1 3.6644 3.2514 0.6180 38 1 5.5552 1.3332 1.8760 39 1 7.3807 2.7934 1.1574 40 1 6.3851 2.3818 -0.2608 41 1 4.4959 5.4509 -0.5443 42 1 4.2777 3.6790 -0.4258 43 1 3.2074 3.9471 1.5958 44 1 3.4261 5.7199 1.4756 45 1 6.1641 3.0993 3.4545 46 1 4.3956 2.8830 3.4922 47 1 6.1290 7.0470 2.5376 48 1 5.5343 6.8604 0.8704 49 1 7.2417 8.9427 0.9789 50 1 7.6323 10.6304 0.6527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752690367.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:50 Heat of formation + Delta-G solvation = -55.210049 kcal Electronic energy + Delta-G solvation = -31367.122310 eV Core-core repulsion = 27203.651531 eV Total energy + Delta-G solvation = -4163.470778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.19043 -40.66184 -39.91593 -38.48359 -36.50887 -35.90467 -33.73433 -33.11831 -32.38476 -32.30287 -31.64055 -28.23800 -27.69614 -26.19116 -25.24059 -25.19575 -23.28978 -21.88008 -21.71771 -21.30574 -20.61846 -19.93012 -18.69682 -17.92977 -17.83204 -17.35398 -16.91238 -16.48404 -16.28941 -16.10217 -15.62103 -15.53394 -15.51008 -15.14025 -15.02604 -14.79088 -14.34795 -14.30028 -14.00512 -13.82835 -13.67763 -13.59209 -13.35873 -13.30347 -13.11470 -12.85926 -12.77460 -12.57942 -12.35229 -12.20729 -12.08293 -11.92555 -11.87265 -11.73617 -11.48693 -11.39788 -11.18862 -11.02951 -10.48823 -10.33676 -10.07395 -9.84265 -9.42537 -8.90322 -6.03763 1.53330 1.54335 1.54379 1.81971 1.92581 2.05322 2.39890 2.69683 3.01977 3.17532 3.21176 3.50335 3.56443 3.64367 3.80039 3.88320 3.94971 4.01392 4.04329 4.10262 4.16372 4.20664 4.29509 4.32555 4.43746 4.44725 4.52785 4.54755 4.62669 4.66167 4.71537 4.76408 4.79603 4.86238 4.91046 4.97220 5.03822 5.09045 5.15675 5.18930 5.19699 5.52069 5.62448 5.89468 5.97663 6.04354 6.06439 6.49432 6.61610 6.79341 7.20026 7.48325 7.98956 8.57723 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025934 B = 0.002364 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.389925 B =11841.240039 C =12045.159930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.068 3.932 4 H 0.118 0.882 5 C -0.171 4.171 6 C 0.495 3.505 7 O -0.578 6.578 8 N -0.726 5.726 9 C 0.146 3.854 10 C -0.109 4.109 11 C 0.071 3.929 12 H 0.064 0.936 13 C -0.182 4.182 14 C -0.176 4.176 15 C 0.063 3.937 16 H 0.115 0.885 17 C -0.110 4.110 18 N -0.498 5.498 19 C 0.049 3.951 20 C 0.446 3.554 21 O -0.611 6.611 22 N -0.590 5.590 23 C -0.406 4.406 24 H 0.070 0.930 25 C -0.043 4.043 26 N -0.918 5.918 27 Si 1.131 2.869 28 H -0.272 1.272 29 H -0.275 1.275 30 H -0.274 1.274 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.434 0.566 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.109 0.891 43 H 0.114 0.886 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.089 0.911 47 H 0.109 0.891 48 H 0.075 0.925 49 H 0.384 0.616 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.385 -13.081 0.663 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.315 6.315 3 C 0.007 3.993 4 H 0.135 0.865 5 C -0.229 4.229 6 C 0.282 3.718 7 O -0.457 6.457 8 N -0.402 5.402 9 C 0.041 3.959 10 C -0.148 4.148 11 C -0.038 4.038 12 H 0.082 0.918 13 C -0.222 4.222 14 C -0.215 4.215 15 C -0.045 4.045 16 H 0.133 0.867 17 C -0.149 4.149 18 N -0.221 5.221 19 C -0.083 4.083 20 C 0.234 3.766 21 O -0.496 6.496 22 N -0.230 5.230 23 C -0.535 4.535 24 H 0.088 0.912 25 C -0.241 4.241 26 N -0.558 5.558 27 Si 0.951 3.049 28 H -0.197 1.197 29 H -0.200 1.200 30 H -0.199 1.199 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.296 0.704 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.113 0.887 45 H 0.095 0.905 46 H 0.107 0.893 47 H 0.127 0.873 48 H 0.093 0.907 49 H 0.218 0.782 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.992 -13.323 0.589 23.207 hybrid contribution -1.699 -0.273 -0.028 1.721 sum -20.691 -13.596 0.561 24.764 Atomic orbital electron populations 1.23107 0.78664 1.04183 1.01565 1.88023 1.21921 1.26376 1.95174 1.22092 0.92363 0.87146 0.97672 0.86452 1.22281 1.04538 1.02172 0.93884 1.21314 0.87345 0.84329 0.78771 1.90673 1.70627 1.32169 1.52237 1.48857 1.21361 1.10889 1.59088 1.20854 0.82552 1.00371 0.92089 1.21933 0.98900 0.94146 0.99813 1.22870 0.95223 0.94615 0.91087 0.91776 1.23649 0.95867 1.03898 0.98758 1.23599 0.99426 1.04902 0.93552 1.23263 0.87051 0.96874 0.97352 0.86741 1.22024 1.03460 0.93166 0.96218 1.65054 1.37837 1.04304 1.14908 1.21833 0.93012 0.90944 1.02489 1.20876 0.91141 0.82012 0.82617 1.90504 1.50319 1.51425 1.57320 1.42000 1.14291 1.07116 1.59627 1.20458 0.92513 0.95676 1.44888 0.91200 1.27732 1.08819 0.90968 0.96630 1.70976 1.05695 1.35446 1.43657 0.82652 0.69326 0.76302 0.76582 1.19710 1.20043 1.19936 0.92568 0.91871 0.88762 0.92768 0.88890 0.89506 0.70367 0.89887 0.91593 0.91398 0.90378 0.87318 0.86865 0.88731 0.90547 0.89298 0.87256 0.90667 0.78225 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.40 -8.02 9.89 -129.99 -1.29 -9.30 16 3 C 0.07 1.05 3.13 29.85 0.09 1.15 16 4 H 0.12 0.98 7.79 -2.39 -0.02 0.96 16 5 C -0.17 -1.98 9.48 71.98 0.68 -1.30 16 6 C 0.50 11.18 7.18 87.66 0.63 11.81 16 7 O -0.58 -19.13 15.83 15.95 0.25 -18.87 16 8 N -0.73 -13.28 2.72 -442.10 -1.20 -14.48 16 9 C 0.15 3.33 3.15 45.08 0.14 3.47 16 10 C -0.11 -2.93 5.49 30.88 0.17 -2.76 16 11 C 0.07 2.00 3.24 45.35 0.15 2.15 16 12 H 0.06 2.35 7.03 -2.39 -0.02 2.33 16 13 C -0.18 -3.32 5.02 31.57 0.16 -3.16 16 14 C -0.18 -2.45 5.23 31.58 0.17 -2.29 16 15 C 0.06 1.22 3.68 45.37 0.17 1.39 16 16 H 0.11 1.89 7.99 -2.39 -0.02 1.88 16 17 C -0.11 -2.20 5.49 30.90 0.17 -2.03 16 18 N -0.50 -14.47 4.59 -832.11 -3.82 -18.29 16 19 C 0.05 1.53 5.14 85.55 0.44 1.97 16 20 C 0.45 20.62 7.45 87.65 0.65 21.27 16 21 O -0.61 -33.61 14.94 -3.05 -0.05 -33.66 16 22 N -0.59 -29.43 5.28 -306.99 -1.62 -31.05 16 23 C -0.41 -23.06 9.68 84.04 0.81 -22.25 16 24 H 0.07 4.30 7.16 -2.91 -0.02 4.28 16 25 C -0.04 -2.35 5.50 84.92 0.47 -1.88 16 26 N -0.92 -50.71 13.68 21.66 0.30 -50.42 16 27 Si 1.13 48.57 29.92 68.60 2.05 50.62 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 30 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 31 H 0.06 0.44 8.08 -2.39 -0.02 0.42 16 32 H 0.06 0.41 7.87 -2.38 -0.02 0.39 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.69 7.87 -2.38 -0.02 0.67 16 36 H 0.09 0.71 6.91 -2.39 -0.02 0.69 16 37 H 0.43 5.95 1.71 -118.35 -0.20 5.75 16 38 H 0.08 2.24 6.90 -2.39 -0.02 2.23 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.40 7.88 -2.39 -0.02 1.38 16 42 H 0.11 1.67 4.22 -2.39 -0.01 1.66 16 43 H 0.11 1.19 5.26 -2.39 -0.01 1.18 16 44 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.11 2.98 7.97 -2.39 -0.02 2.96 16 48 H 0.08 2.02 6.89 -2.39 -0.02 2.00 16 49 H 0.38 17.42 6.73 -92.71 -0.62 16.80 16 50 H 0.26 13.76 6.77 -92.71 -0.63 13.13 16 Total: -1.00 -80.87 379.88 1.04 -79.83 By element: Atomic # 1 Polarization: 36.36 SS G_CDS: 0.29 Total: 36.64 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.12 Total: 8.98 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -6.35 Total: -114.24 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: -1.08 Total: -61.83 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.05 Total: 50.62 kcal Total: -80.87 1.04 -79.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752690367.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.621 kcal (2) G-P(sol) polarization free energy of solvation -80.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds