Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46651 * 2 1 4 4 C 1.42908 * 113.99630 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.51886 * 29.87234 * 4 3 2 6 6 C 1.53086 * 109.57148 * 269.71099 * 4 3 2 7 7 O 1.42901 * 109.41635 * 182.45419 * 6 4 3 8 8 C 1.42904 * 114.09497 * 61.15619 * 7 6 4 9 9 C 1.53096 * 109.49227 * 298.89275 * 8 7 6 10 10 C 1.53176 * 109.51978 * 149.99731 * 4 3 2 11 11 H 1.09003 * 109.54982 * 56.99348 * 10 4 3 12 12 N 1.46905 * 109.54515 * 296.81476 * 10 4 3 13 13 C 1.46902 * 110.99800 * 155.18060 * 12 10 4 14 14 C 1.50706 * 109.46577 * 179.97438 * 13 12 10 15 15 O 1.21279 * 120.00072 * 359.97438 * 14 13 12 16 16 N 1.34777 * 119.99762 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00258 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.46871 * 90.00155 * 17 16 14 19 19 H 1.07998 * 120.00222 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00011 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99586 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99962 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47167 * 60.00444 * 22 20 18 24 24 H 1.48506 * 109.46866 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47193 * 299.99997 * 22 20 18 26 26 C 1.46504 * 119.99858 * 0.02562 * 16 14 13 27 27 C 1.52999 * 109.47507 * 89.99839 * 26 16 14 28 28 C 1.47193 * 109.47411 * 180.02562 * 27 26 16 29 29 N 8.87007 * 136.68028 * 146.51124 * 3 1 2 30 30 H 1.09010 * 109.47047 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47318 * 299.99516 * 1 2 3 32 32 H 1.08995 * 109.47277 * 60.00236 * 1 2 3 33 33 H 1.08998 * 109.47110 * 239.99670 * 2 1 3 34 34 H 1.09004 * 109.47282 * 119.99468 * 2 1 3 35 35 H 1.08996 * 109.48462 * 302.43763 * 6 4 3 36 36 H 1.09004 * 109.48237 * 62.46624 * 6 4 3 37 37 H 1.09005 * 109.47915 * 58.83086 * 8 7 6 38 38 H 1.09003 * 109.47872 * 178.84783 * 8 7 6 39 39 H 1.09006 * 109.45487 * 297.61306 * 9 8 7 40 40 H 1.09002 * 109.60073 * 177.42010 * 9 8 7 41 41 H 1.00896 * 110.99866 * 31.22144 * 12 10 4 42 42 H 1.09000 * 109.46894 * 60.00165 * 13 12 10 43 43 H 1.09000 * 109.47263 * 299.99731 * 13 12 10 44 44 H 1.09000 * 109.47710 * 210.00590 * 17 16 14 45 45 H 1.09000 * 109.46883 * 330.00634 * 17 16 14 46 46 H 0.97008 * 119.99716 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.47121 * 209.99861 * 26 16 14 48 48 H 1.08997 * 109.47160 * 329.99513 * 26 16 14 49 49 H 1.09005 * 109.46948 * 300.00127 * 27 26 16 50 50 H 1.08997 * 109.47177 * 59.99685 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8640 0.6009 -0.5126 6 6 3.9421 1.5077 1.4416 7 8 5.3609 1.6780 1.4373 8 6 5.8014 2.8877 0.8171 9 6 5.3647 2.8979 -0.6502 10 6 3.8420 2.7470 -0.7225 11 1 3.3676 3.6025 -0.2416 12 7 3.4212 2.6779 -2.1283 13 6 3.2469 4.0230 -2.6923 14 6 2.8166 3.9119 -4.1324 15 8 2.6701 2.8197 -4.6389 16 7 2.5946 5.0262 -4.8573 17 6 2.1769 4.9183 -6.2573 18 6 0.6723 4.8746 -6.3306 19 1 0.0859 4.9229 -5.4250 20 6 0.0443 4.7731 -7.5539 21 7 0.7585 4.7137 -8.6566 22 14 -1.8206 4.7183 -7.6447 23 1 -2.3816 5.9607 -7.0556 24 1 -2.2441 4.6090 -9.0639 25 1 -2.3188 3.5423 -6.8869 26 6 2.7721 6.3455 -4.2455 27 6 4.2157 6.8108 -4.4463 28 6 4.3942 8.1361 -3.8311 29 7 4.5341 9.1584 -3.3578 30 1 -0.3634 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.4773 2.3434 1.9647 36 1 3.6893 0.5760 1.9478 37 1 5.3610 3.7415 1.3321 38 1 6.8882 2.9503 0.8735 39 1 5.8382 2.0686 -1.1758 40 1 5.6597 3.8397 -1.1130 41 1 2.5782 2.1323 -2.2269 42 1 4.1906 4.5656 -2.6363 43 1 2.4854 4.5589 -2.1256 44 1 2.5429 5.7814 -6.8133 45 1 2.5883 4.0063 -6.6899 46 1 0.3167 4.6426 -9.5173 47 1 2.0924 7.0575 -4.7136 48 1 2.5554 6.2836 -3.1791 49 1 4.8954 6.0988 -3.9782 50 1 4.4324 6.8728 -5.5127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362028146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -123.683447 kcal Electronic energy + Delta-G solvation = -30387.717573 eV Core-core repulsion = 26221.277565 eV Total energy + Delta-G solvation = -4166.440008 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.09728 -40.51183 -38.45996 -38.00221 -36.93006 -36.48010 -34.85028 -32.85324 -32.32306 -32.10773 -30.54764 -29.57836 -27.47675 -25.30452 -24.90114 -24.47614 -23.81031 -23.33108 -21.24595 -19.98874 -18.81294 -18.35665 -18.23997 -17.87093 -17.60247 -17.18415 -16.85549 -16.52289 -16.42844 -16.19654 -15.79396 -15.70309 -15.47646 -15.20383 -14.69619 -14.59773 -14.35601 -14.24964 -13.95860 -13.88452 -13.61682 -13.52483 -13.36850 -13.26409 -13.17463 -13.08402 -12.89414 -12.69749 -12.50462 -12.45020 -12.39330 -12.15494 -12.09687 -11.85210 -11.79296 -11.67962 -11.42601 -10.96451 -10.57783 -10.53947 -10.24036 -9.46346 -9.39672 -8.17171 -6.29529 1.39950 1.42694 1.49475 1.70263 1.85855 1.93153 2.23882 2.44176 2.44971 2.96605 3.08880 3.14466 3.26680 3.60695 3.78426 3.84739 4.03957 4.05075 4.11046 4.13107 4.16537 4.21963 4.29557 4.36129 4.41491 4.45632 4.47888 4.59759 4.65648 4.68314 4.74819 4.84161 4.85371 4.89164 5.01626 5.06823 5.07393 5.12033 5.25041 5.29970 5.35658 5.62043 5.86670 5.97943 6.03580 6.14337 6.26047 6.31662 6.61843 6.77210 6.83856 7.35761 7.56172 8.89257 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008710 B = 0.003408 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3213.807404 B = 8213.821459 C =10667.030007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.395 6.395 4 C 0.056 3.944 5 H 0.068 0.932 6 C 0.050 3.950 7 O -0.392 6.392 8 C 0.056 3.944 9 C -0.139 4.139 10 C 0.091 3.909 11 H 0.060 0.940 12 N -0.678 5.678 13 C 0.052 3.948 14 C 0.501 3.499 15 O -0.578 6.578 16 N -0.598 5.598 17 C 0.261 3.739 18 C -0.541 4.541 19 H 0.052 0.948 20 C 0.012 3.988 21 N -0.925 5.925 22 Si 0.956 3.044 23 H -0.263 1.263 24 H -0.282 1.282 25 H -0.280 1.280 26 C 0.113 3.887 27 C -0.038 4.038 28 C 0.246 3.754 29 N -0.488 5.488 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.345 0.655 42 H 0.130 0.870 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.002 0.998 46 H 0.265 0.735 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.137 0.863 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.880 -3.912 21.289 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.315 6.315 4 C -0.003 4.003 5 H 0.086 0.914 6 C -0.028 4.028 7 O -0.311 6.311 8 C -0.021 4.021 9 C -0.177 4.177 10 C -0.019 4.019 11 H 0.078 0.922 12 N -0.310 5.310 13 C -0.080 4.080 14 C 0.290 3.710 15 O -0.457 6.457 16 N -0.330 5.330 17 C 0.140 3.860 18 C -0.580 4.580 19 H 0.070 0.930 20 C -0.187 4.187 21 N -0.565 5.565 22 Si 0.782 3.218 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.205 1.205 26 C -0.011 4.011 27 C -0.079 4.079 28 C -0.071 4.071 29 N -0.166 5.166 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.164 0.836 42 H 0.147 0.853 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.021 0.979 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.122 0.878 49 H 0.155 0.845 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.626 -3.009 21.354 23.226 hybrid contribution -2.092 -0.327 -0.793 2.261 sum 6.534 -3.336 20.560 21.830 Atomic orbital electron populations 1.21764 0.93211 1.03315 1.02479 1.22690 0.96050 0.82778 1.00855 1.87880 1.20427 1.28135 1.95057 1.22925 0.81544 0.98818 0.96982 0.91363 1.22995 0.81380 1.03437 0.94959 1.87941 1.21315 1.42511 1.79349 1.22837 1.01459 0.86588 0.91174 1.22271 0.93262 1.04375 0.97841 1.21745 0.96626 0.96408 0.87083 0.92229 1.60258 1.40656 1.13444 1.16676 1.21968 1.03449 0.92323 0.90280 1.21145 0.76911 0.83676 0.89296 1.90669 1.53034 1.28610 1.73343 1.48075 1.66092 1.05673 1.13143 1.18770 0.93446 0.96325 0.77447 1.21729 0.93220 1.50508 0.92531 0.92957 1.25713 1.02872 0.94785 0.95358 1.70020 1.37246 1.50976 0.98289 0.85636 0.80265 0.78823 0.77097 1.18804 1.20708 1.20540 1.21515 0.95038 0.84373 1.00198 1.19832 0.99430 0.85584 1.03056 1.29091 0.91742 0.94308 0.91959 1.81221 1.10235 1.13437 1.11744 0.89273 0.91587 0.93425 0.93531 0.91499 0.91716 0.87776 0.91740 0.86692 0.91224 0.88606 0.83568 0.85260 0.90819 0.94788 0.97940 0.92578 0.89885 0.87763 0.84489 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.05 0.94 6.47 71.98 0.47 1.41 16 3 O -0.40 -8.57 9.29 -148.98 -1.38 -9.95 16 4 C 0.06 1.09 2.32 30.68 0.07 1.16 16 5 H 0.07 1.47 7.79 -2.39 -0.02 1.45 16 6 C 0.05 0.80 6.47 72.01 0.47 1.27 16 7 O -0.39 -6.95 10.77 -148.98 -1.60 -8.55 16 8 C 0.06 0.73 6.84 72.01 0.49 1.23 16 9 C -0.14 -2.15 5.63 30.69 0.17 -1.98 16 10 C 0.09 1.76 2.28 45.03 0.10 1.86 16 11 H 0.06 1.08 7.80 -2.39 -0.02 1.06 16 12 N -0.68 -17.48 5.94 -494.93 -2.94 -20.42 16 13 C 0.05 1.24 4.52 85.56 0.39 1.62 16 14 C 0.50 18.18 7.71 87.66 0.68 18.86 16 15 O -0.58 -27.72 15.78 -3.03 -0.05 -27.77 16 16 N -0.60 -21.33 2.46 -826.14 -2.03 -23.35 16 17 C 0.26 12.64 5.16 85.63 0.44 13.08 16 18 C -0.54 -29.30 9.39 25.60 0.24 -29.06 16 19 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 20 C 0.01 0.66 5.46 84.66 0.46 1.12 16 21 N -0.93 -53.84 13.29 21.45 0.28 -53.56 16 22 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 23 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 26 C 0.11 2.72 5.17 86.38 0.45 3.16 16 27 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 28 C 0.25 5.15 15.43 89.45 1.38 6.53 16 29 N -0.49 -13.13 18.53 19.99 0.37 -12.76 16 30 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.90 8.09 -2.39 -0.02 0.88 16 34 H 0.07 0.92 7.96 -2.39 -0.02 0.91 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.44 7.96 -2.38 -0.02 1.42 16 37 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.10 1.17 7.56 -2.39 -0.02 1.16 16 41 H 0.35 10.64 7.48 -89.70 -0.67 9.97 16 42 H 0.13 2.15 6.57 -2.39 -0.02 2.13 16 43 H 0.07 1.54 7.32 -2.39 -0.02 1.53 16 44 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 45 H 0.00 0.14 7.42 -2.39 -0.02 0.12 16 46 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 47 H 0.08 2.22 8.07 -2.38 -0.02 2.20 16 48 H 0.10 1.89 6.44 -2.39 -0.02 1.88 16 49 H 0.14 1.64 7.22 -2.38 -0.02 1.63 16 50 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -75.07 413.07 1.66 -73.41 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.27 Total: 19.26 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 6.72 Total: 17.97 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.31 Total: -110.09 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -3.04 Total: -46.27 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -75.07 1.66 -73.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362028146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.273 kcal (2) G-P(sol) polarization free energy of solvation -75.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds