Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47365 * 2 1 4 4 C 1.42897 * 114.00045 * 179.97438 * 3 2 1 5 5 H 1.09005 * 112.87913 * 338.19381 * 4 3 2 6 6 C 1.53918 * 113.65317 * 109.50990 * 4 3 2 7 7 C 1.53914 * 87.22478 * 89.62662 * 6 4 3 8 8 H 1.09001 * 113.65613 * 139.44511 * 7 6 4 9 9 N 1.46503 * 113.65166 * 270.38104 * 7 6 4 10 10 C 1.34783 * 119.99449 * 254.02146 * 9 7 6 11 11 O 1.21590 * 119.99935 * 359.97438 * 10 9 7 12 12 N 1.34779 * 119.99768 * 179.97438 * 10 9 7 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.46992 * 179.97438 * 13 12 10 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31418 * 120.00215 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47177 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47036 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.46776 * 329.99732 * 21 19 17 25 25 C 1.53022 * 86.95329 * 24.91044 * 7 6 4 26 26 C 1.53561 * 115.13934 * 218.11123 * 25 7 6 27 27 C 1.55059 * 103.98694 * 206.85427 * 26 25 7 28 28 C 1.54954 * 102.85466 * 37.30557 * 27 26 25 29 29 C 1.53169 * 115.37045 * 92.09844 * 25 7 6 30 30 H 1.09000 * 109.47036 * 299.99803 * 1 2 3 31 31 H 1.09004 * 109.47255 * 59.99513 * 1 2 3 32 32 H 1.08996 * 109.47045 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.47016 * 240.00268 * 2 1 3 34 34 H 1.09004 * 109.47255 * 120.00487 * 2 1 3 35 35 H 1.08999 * 113.58939 * 335.03796 * 6 4 3 36 36 H 1.08998 * 113.59349 * 204.21494 * 6 4 3 37 37 H 0.96992 * 120.00655 * 74.01872 * 9 7 6 38 38 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 40 40 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 41 41 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 42 42 H 0.96996 * 119.99520 * 179.97438 * 20 19 17 43 43 H 1.09005 * 110.52614 * 325.48021 * 26 25 7 44 44 H 1.09000 * 110.52598 * 88.22521 * 26 25 7 45 45 H 1.09003 * 110.73548 * 278.96712 * 27 26 25 46 46 H 1.09000 * 110.89596 * 155.71704 * 27 26 25 47 47 H 1.09003 * 110.47736 * 203.76601 * 28 27 26 48 48 H 1.09002 * 110.59300 * 81.19528 * 28 27 26 49 49 H 1.09005 * 110.09360 * 248.87527 * 29 25 7 50 50 H 1.09002 * 110.09899 * 10.41146 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9268 0.5640 0.3740 6 6 4.0099 1.9780 -1.3282 7 6 3.8580 3.3981 -0.7545 8 1 4.6961 4.0554 -0.9863 9 7 2.5580 4.0109 -1.0388 10 6 2.4608 4.9862 -1.9640 11 8 3.4520 5.3577 -2.5622 12 7 1.2648 5.5497 -2.2259 13 6 1.1589 6.6094 -3.2319 14 6 -0.2741 7.0648 -3.3329 15 8 -1.1233 6.5547 -2.6330 16 7 -0.6118 8.0397 -4.2002 17 6 -1.9154 8.4544 -4.2916 18 1 -2.6716 7.9996 -3.6690 19 6 -2.2636 9.4589 -5.1861 20 7 -3.5133 9.8561 -5.2742 21 14 -0.9556 10.2450 -6.2634 22 1 -0.8452 9.4909 -7.5379 23 1 -1.3321 11.6523 -6.5519 24 1 0.3501 10.2169 -5.5568 25 6 3.9448 2.7587 0.6330 26 6 3.0244 3.3774 1.6952 27 6 3.7527 3.0925 3.0341 28 6 5.2456 3.2702 2.6591 29 6 5.3516 2.6834 1.2341 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 3.3690 1.7840 -2.1883 36 1 5.0458 1.6840 -1.4967 37 1 1.7674 3.7148 -0.5613 38 1 0.4740 5.2530 -1.7489 39 1 1.4873 6.2270 -4.1984 40 1 1.7883 7.4505 -2.9411 41 1 0.0674 8.4478 -4.7596 42 1 -3.7562 10.5577 -5.8983 43 1 2.9241 4.4510 1.5355 44 1 2.0469 2.8952 1.6816 45 1 3.5578 2.0742 3.3704 46 1 3.4583 3.8126 3.7977 47 1 5.8808 2.7142 3.3487 48 1 5.5177 4.3257 2.6581 49 1 5.6842 1.6463 1.2800 50 1 6.0465 3.2730 0.6361 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376334161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -119.538462 kcal Electronic energy + Delta-G solvation = -30243.409814 eV Core-core repulsion = 26077.149547 eV Total energy + Delta-G solvation = -4166.260268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08141 -40.86066 -39.93726 -38.05591 -36.34510 -36.07962 -35.27077 -33.89834 -33.69907 -31.72017 -29.67457 -29.23041 -27.77813 -26.43483 -25.18396 -23.78881 -22.73669 -21.92743 -21.47404 -21.33846 -20.56151 -19.88533 -19.19359 -17.56070 -17.52248 -17.33724 -16.97159 -16.76219 -16.71059 -16.49502 -16.14017 -15.74803 -15.65632 -15.14629 -14.92545 -14.59605 -14.38660 -14.30254 -14.21673 -13.99475 -13.97577 -13.60881 -13.38694 -13.03227 -12.96761 -12.85069 -12.44839 -12.29323 -12.10322 -12.00178 -11.96148 -11.92995 -11.78851 -11.58383 -11.44458 -11.40462 -11.33990 -11.00700 -10.65596 -10.37047 -10.30740 -10.28150 -9.73662 -8.45697 -6.07666 1.31196 1.34015 1.43666 1.57927 1.78472 2.10973 2.20462 2.55031 2.80663 3.10513 3.25671 3.43511 3.56316 3.76676 3.84275 3.99224 4.00789 4.19262 4.22782 4.32413 4.37765 4.39534 4.44031 4.52808 4.54539 4.57140 4.66429 4.73601 4.79124 4.84432 4.95950 5.00379 5.00628 5.06711 5.12526 5.21422 5.27347 5.29541 5.30889 5.32978 5.42582 5.48907 5.51576 5.67852 5.87954 5.98418 6.38409 6.48902 6.77826 7.03124 7.28340 7.54497 7.78029 8.70799 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.002350 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.043406 B =11911.970443 C =12621.602189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.382 6.382 4 C 0.083 3.917 5 H 0.097 0.903 6 C -0.173 4.173 7 C 0.146 3.854 8 H 0.085 0.915 9 N -0.708 5.708 10 C 0.707 3.293 11 O -0.630 6.630 12 N -0.728 5.728 13 C 0.139 3.861 14 C 0.446 3.554 15 O -0.614 6.614 16 N -0.578 5.578 17 C -0.331 4.331 18 H 0.063 0.937 19 C -0.008 4.008 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.256 1.256 23 H -0.273 1.273 24 H -0.233 1.233 25 C -0.080 4.080 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.123 4.123 29 C -0.094 4.094 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.407 0.593 38 H 0.408 0.592 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.392 0.608 42 H 0.281 0.719 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.059 0.941 49 H 0.089 0.911 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.000 -20.239 13.845 32.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.301 6.301 4 C 0.025 3.975 5 H 0.115 0.885 6 C -0.212 4.212 7 C 0.040 3.960 8 H 0.103 0.897 9 N -0.362 5.362 10 C 0.407 3.593 11 O -0.512 6.512 12 N -0.386 5.386 13 C 0.011 3.989 14 C 0.233 3.767 15 O -0.500 6.500 16 N -0.218 5.218 17 C -0.460 4.460 18 H 0.081 0.919 19 C -0.208 4.208 20 N -0.566 5.566 21 Si 0.779 3.221 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.156 1.156 25 C -0.081 4.081 26 C -0.149 4.149 27 C -0.157 4.157 28 C -0.160 4.160 29 C -0.132 4.132 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.244 0.756 38 H 0.245 0.755 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.228 0.772 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.078 0.922 49 H 0.108 0.892 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.012 -19.934 13.667 32.026 hybrid contribution -0.837 0.453 -0.574 1.111 sum 20.175 -19.481 13.093 30.952 Atomic orbital electron populations 1.21772 0.93784 1.03100 1.02368 1.22620 0.95474 0.82936 1.00827 1.87803 1.20174 1.27727 1.94432 1.23127 0.81509 0.97663 0.95178 0.88543 1.24065 1.02773 0.96197 0.98125 1.21756 0.84644 0.93651 0.95988 0.89664 1.44604 1.11760 1.38345 1.41530 1.15903 0.82856 0.79895 0.80650 1.90859 1.36841 1.67795 1.55659 1.44721 1.09622 1.40506 1.43720 1.20686 0.92534 0.91820 0.93896 1.20493 0.90897 0.82463 0.82798 1.90525 1.52796 1.59354 1.47314 1.41911 1.08805 1.34346 1.36693 1.19028 0.84631 1.19608 1.22734 0.91882 1.26065 0.99291 0.96787 0.98649 1.69783 1.19133 1.30051 1.37605 0.85443 0.78949 0.78568 0.79160 1.18070 1.19749 1.15629 1.22641 0.97650 0.94666 0.93114 1.22093 0.98935 0.99661 0.94209 1.22493 0.95159 1.01782 0.96313 1.22410 0.96521 1.01010 0.96061 1.21870 0.92638 1.02774 0.95885 0.92190 0.93311 0.89448 0.93078 0.91771 0.92223 0.86471 0.75618 0.75518 0.88109 0.88103 0.77212 0.90910 0.92937 0.91022 0.90859 0.91742 0.90053 0.92179 0.89217 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.06 0.77 6.51 71.98 0.47 1.24 16 3 O -0.38 -6.65 7.72 -148.98 -1.15 -7.81 16 4 C 0.08 1.20 3.84 31.01 0.12 1.32 16 5 H 0.10 0.96 7.63 -2.38 -0.02 0.94 16 6 C -0.17 -2.97 7.55 31.21 0.24 -2.74 16 7 C 0.15 3.09 3.76 45.31 0.17 3.26 16 8 H 0.09 2.09 7.22 -2.39 -0.02 2.07 16 9 N -0.71 -18.16 4.64 -456.28 -2.12 -20.28 16 10 C 0.71 23.03 8.57 179.05 1.53 24.56 16 11 O -0.63 -23.97 15.96 -4.00 -0.06 -24.03 16 12 N -0.73 -24.43 5.53 -482.28 -2.67 -27.10 16 13 C 0.14 4.86 6.15 85.63 0.53 5.38 16 14 C 0.45 20.10 7.85 87.66 0.69 20.78 16 15 O -0.61 -32.54 15.24 -3.07 -0.05 -32.58 16 16 N -0.58 -27.17 5.09 -306.98 -1.56 -28.73 16 17 C -0.33 -19.08 10.16 84.04 0.85 -18.22 16 18 H 0.06 4.28 7.39 -2.91 -0.02 4.26 16 19 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 20 N -0.93 -54.92 13.96 21.66 0.30 -54.61 16 21 Si 0.96 38.67 27.74 68.60 1.90 40.57 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 25 C -0.08 -1.21 1.05 -51.82 -0.05 -1.27 16 26 C -0.11 -1.88 5.03 31.49 0.16 -1.72 16 27 C -0.12 -1.54 6.91 31.97 0.22 -1.32 16 28 C -0.12 -1.36 6.84 31.76 0.22 -1.14 16 29 C -0.09 -1.04 6.15 31.15 0.19 -0.85 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.41 9.87 7.04 -92.71 -0.65 9.22 16 38 H 0.41 13.87 7.45 -92.71 -0.69 13.18 16 39 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 40 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.39 15.53 5.76 -92.71 -0.53 14.99 16 42 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 43 H 0.05 1.08 7.97 -2.38 -0.02 1.06 16 44 H 0.07 1.32 6.82 -2.39 -0.02 1.30 16 45 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.09 0.66 7.74 -2.38 -0.02 0.64 16 50 H 0.07 0.85 7.74 -2.39 -0.02 0.83 16 Total: -1.00 -74.65 399.71 0.17 -74.48 By element: Atomic # 1 Polarization: 53.15 SS G_CDS: -0.97 Total: 52.18 kcal Atomic # 6 Polarization: 21.38 SS G_CDS: 6.54 Total: 27.92 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -6.05 Total: -130.73 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -1.26 Total: -64.42 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 1.90 Total: 40.57 kcal Total: -74.65 0.17 -74.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376334161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.059 kcal (2) G-P(sol) polarization free energy of solvation -74.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds