Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42890 * 109.47480 * 2 1 4 4 C 1.42902 * 114.00100 * 180.02562 * 3 2 1 5 5 H 1.08993 * 112.95452 * 18.59295 * 4 3 2 6 6 C 1.53956 * 113.66221 * 247.18213 * 4 3 2 7 7 C 1.53945 * 87.29687 * 270.26126 * 6 4 3 8 8 H 1.09002 * 113.66385 * 220.78828 * 7 6 4 9 9 N 1.46512 * 113.66011 * 89.74005 * 7 6 4 10 10 C 1.46495 * 119.99938 * 1.91513 * 9 7 6 11 11 C 1.34774 * 119.99666 * 181.91557 * 9 7 6 12 12 O 1.21588 * 120.00132 * 5.05833 * 11 9 7 13 13 N 1.34782 * 119.99540 * 185.06837 * 11 9 7 14 14 C 1.46501 * 119.99533 * 180.02562 * 13 11 9 15 15 C 1.50702 * 109.46548 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00573 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99658 * 180.02562 * 15 14 13 18 18 C 1.37094 * 120.00033 * 179.97438 * 17 15 14 19 19 H 1.07998 * 120.00142 * 359.97438 * 18 17 15 20 20 C 1.38953 * 120.00101 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00119 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99935 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47202 * 90.00133 * 22 20 18 24 24 H 1.48501 * 109.47211 * 210.00214 * 22 20 18 25 25 H 1.48499 * 109.47533 * 329.99989 * 22 20 18 26 26 C 1.52906 * 86.78388 * 335.26878 * 7 6 4 27 27 C 1.52907 * 121.13485 * 150.62010 * 26 7 6 28 28 C 1.53952 * 86.88301 * 150.56720 * 27 26 7 29 29 C 1.52907 * 121.13208 * 259.17718 * 26 7 6 30 30 H 1.09000 * 109.46835 * 299.99877 * 1 2 3 31 31 H 1.08999 * 109.47013 * 59.99885 * 1 2 3 32 32 H 1.09000 * 109.47430 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47160 * 239.99687 * 2 1 3 34 34 H 1.09008 * 109.47182 * 120.00266 * 2 1 3 35 35 H 1.09003 * 113.57644 * 155.65643 * 6 4 3 36 36 H 1.09006 * 113.64615 * 24.87770 * 6 4 3 37 37 H 1.08991 * 109.47509 * 95.33947 * 10 9 7 38 38 H 1.09000 * 109.47091 * 215.34556 * 10 9 7 39 39 H 1.09007 * 109.46909 * 335.33873 * 10 9 7 40 40 H 0.96993 * 120.00298 * 359.97438 * 13 11 9 41 41 H 1.09002 * 109.46842 * 299.99126 * 14 13 11 42 42 H 1.09001 * 109.47542 * 59.99737 * 14 13 11 43 43 H 0.96999 * 120.00581 * 359.97438 * 17 15 14 44 44 H 0.96999 * 119.99855 * 179.97438 * 21 20 18 45 45 H 1.09004 * 113.66633 * 265.08380 * 27 26 7 46 46 H 1.09003 * 113.66811 * 36.05239 * 27 26 7 47 47 H 1.09007 * 113.58164 * 89.91426 * 28 27 26 48 48 H 1.09005 * 113.58176 * 220.70720 * 28 27 26 49 49 H 1.08999 * 113.66460 * 323.85773 * 29 26 7 50 50 H 1.09004 * 113.66354 * 94.81843 * 29 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.9296 0.5452 -0.3209 6 6 4.0043 2.0536 1.2990 7 6 3.8587 3.4393 0.6443 8 1 4.6989 4.1057 0.8391 9 7 2.5597 4.0714 0.8885 10 6 1.5642 3.3993 1.7271 11 6 2.2808 5.2712 0.3417 12 8 3.0687 5.7867 -0.4276 13 7 1.1284 5.8997 0.6478 14 6 0.8250 7.2037 0.0529 15 6 -0.5121 7.6854 0.5542 16 8 -1.1491 7.0062 1.3314 17 7 -1.0006 8.8706 0.1380 18 6 -2.2172 9.3087 0.5935 19 1 -2.7843 8.7039 1.2855 20 6 -2.7205 10.5308 0.1649 21 7 -2.0307 11.2665 -0.6776 22 14 -4.3785 11.1273 0.7850 23 1 -4.1866 11.9225 2.0244 24 1 -5.0195 11.9747 -0.2525 25 1 -5.2478 9.9590 1.0761 26 6 3.9467 2.7176 -0.7009 27 6 3.2495 3.2731 -1.9432 28 6 4.3670 2.6059 -2.7656 29 6 5.2478 2.6982 -1.5040 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.0388 1.7680 1.4896 36 1 3.3596 1.9113 2.1664 37 1 1.6390 3.7712 2.7488 38 1 0.5659 3.6016 1.3389 39 1 1.7468 2.3247 1.7173 40 1 0.4998 5.4884 1.2613 41 1 1.5978 7.9195 0.3331 42 1 0.7933 7.1094 -1.0325 43 1 -0.4914 9.4137 -0.4838 44 1 -2.3823 12.1195 -0.9771 45 1 2.2623 2.8456 -2.1189 46 1 3.2560 4.3616 -1.9987 47 1 4.1377 1.5826 -3.0634 48 1 4.7240 3.2183 -3.5937 49 1 5.8173 3.6251 -1.4367 50 1 5.8577 1.8122 -1.3274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000377031202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -49.004082 kcal Electronic energy + Delta-G solvation = -31037.622537 eV Core-core repulsion = 26874.420869 eV Total energy + Delta-G solvation = -4163.201668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40136 -39.33086 -38.05951 -37.44678 -35.67464 -34.36041 -33.68600 -32.93485 -31.31966 -30.99735 -27.54883 -27.19178 -25.63897 -24.87610 -24.56088 -23.89311 -23.03435 -21.17595 -19.67918 -19.54981 -18.44413 -18.01457 -17.62850 -16.95274 -16.34515 -16.21916 -15.84049 -15.42295 -15.35444 -14.96407 -14.70912 -14.37524 -14.09823 -13.80082 -13.69482 -13.39171 -13.23584 -12.97462 -12.91774 -12.63241 -12.45607 -12.26526 -12.07857 -12.02896 -11.80448 -11.74089 -11.59134 -11.55526 -11.24217 -11.09532 -10.96483 -10.42953 -10.41105 -10.31150 -10.27731 -10.17292 -9.76315 -9.59142 -9.45785 -8.68087 -8.56176 -8.18945 -8.04867 -6.47080 -3.88856 2.79356 3.14643 3.24156 3.25435 3.30316 3.50742 3.81141 4.10284 4.25140 4.29591 4.34214 4.53088 4.65285 4.69705 4.79964 4.83368 4.95642 4.97303 5.07015 5.08541 5.21797 5.28037 5.34757 5.36618 5.47590 5.51347 5.57193 5.63896 5.66296 5.71727 5.84911 5.86865 5.88064 5.92684 5.99661 6.01912 6.09353 6.15089 6.22024 6.36685 6.57556 6.71572 6.91851 7.03216 7.26198 7.50098 7.97400 8.33322 8.50688 8.96000 9.09374 9.44923 9.93146 10.69990 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002535 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.505164 B =11040.788598 C =11791.675217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.350 6.350 4 C 0.090 3.910 5 H 0.072 0.928 6 C -0.167 4.167 7 C 0.168 3.832 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.073 3.927 11 C 0.711 3.289 12 O -0.595 6.595 13 N -0.724 5.724 14 C 0.129 3.871 15 C 0.430 3.570 16 O -0.597 6.597 17 N -0.551 5.551 18 C -0.304 4.304 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.896 5.896 22 Si 0.932 3.068 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.143 4.143 29 C -0.102 4.102 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.407 0.593 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.396 0.604 44 H 0.274 0.726 45 H 0.063 0.937 46 H 0.105 0.895 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.090 0.910 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.121 -22.440 0.430 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.269 6.269 4 C 0.032 3.968 5 H 0.090 0.910 6 C -0.205 4.205 7 C 0.063 3.937 8 H 0.103 0.897 9 N -0.343 5.343 10 C -0.070 4.070 11 C 0.412 3.588 12 O -0.475 6.475 13 N -0.383 5.383 14 C 0.000 4.000 15 C 0.216 3.784 16 O -0.484 6.484 17 N -0.186 5.186 18 C -0.433 4.433 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.536 5.536 22 Si 0.759 3.241 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.120 4.120 27 C -0.153 4.153 28 C -0.180 4.180 29 C -0.140 4.140 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.245 0.755 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.230 0.770 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.123 0.877 47 H 0.090 0.910 48 H 0.084 0.916 49 H 0.108 0.892 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.039 -22.128 0.311 25.686 hybrid contribution -0.743 0.260 0.207 0.815 sum 12.296 -21.868 0.518 25.093 Atomic orbital electron populations 1.21748 0.93500 1.02162 1.03541 1.22543 0.95750 0.84048 0.99805 1.88012 1.19166 1.25703 1.93979 1.22703 0.81902 0.96742 0.95457 0.90977 1.23890 1.02274 0.95995 0.98367 1.21327 0.85292 0.92495 0.94577 0.89717 1.46372 1.15882 1.18656 1.53354 1.21941 0.91750 0.99916 0.93380 1.15677 0.82051 0.80338 0.80735 1.90834 1.49694 1.67409 1.39516 1.44897 1.20981 1.21348 1.51039 1.20755 0.96420 0.84482 0.98316 1.19798 0.88051 0.83999 0.86548 1.90485 1.61367 1.57129 1.39421 1.41784 1.19143 1.16698 1.40937 1.19721 0.95180 1.02837 1.25568 0.87735 1.25312 0.99934 0.96078 0.96430 1.69618 1.38797 1.13278 1.31896 0.85825 0.81231 0.78779 0.78259 1.20310 1.20834 1.19348 1.23153 0.98378 0.95711 0.94771 1.22664 0.97186 1.02327 0.93119 1.22885 0.97857 1.00546 0.96717 1.22543 0.94205 1.02140 0.95124 0.91627 0.91702 0.91252 0.93567 0.93503 0.88102 0.89595 0.93736 0.91669 0.88705 0.75480 0.90153 0.90183 0.77038 0.91649 0.91842 0.87693 0.91016 0.91553 0.89168 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.06 0.42 6.50 37.16 0.24 0.66 16 3 O -0.35 -3.55 6.65 -35.23 -0.23 -3.79 16 4 C 0.09 0.82 4.17 -26.28 -0.11 0.71 16 5 H 0.07 0.54 7.87 -51.93 -0.41 0.14 16 6 C -0.17 -1.40 7.18 -25.75 -0.18 -1.59 16 7 C 0.17 1.99 3.79 -67.48 -0.26 1.73 16 8 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 9 N -0.61 -8.45 2.79 -179.15 -0.50 -8.95 16 10 C 0.07 0.87 8.33 59.84 0.50 1.37 16 11 C 0.71 12.41 7.67 -86.92 -0.67 11.75 16 12 O -0.60 -11.72 13.99 5.29 0.07 -11.65 16 13 N -0.72 -13.22 5.38 -66.41 -0.36 -13.57 16 14 C 0.13 2.52 6.15 -5.19 -0.03 2.49 16 15 C 0.43 10.18 7.85 -10.98 -0.09 10.10 16 16 O -0.60 -15.67 15.24 5.55 0.08 -15.58 16 17 N -0.55 -13.96 5.29 -10.96 -0.06 -14.02 16 18 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 22 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 C -0.12 -1.29 0.89 -154.71 -0.14 -1.43 16 27 C -0.12 -1.52 6.81 -26.28 -0.18 -1.70 16 28 C -0.14 -1.46 8.10 -25.64 -0.21 -1.67 16 29 C -0.10 -0.96 7.85 -26.18 -0.21 -1.16 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.70 6.09 -51.93 -0.32 0.39 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.85 6.89 -51.93 -0.36 0.49 16 39 H 0.09 0.97 3.77 -51.92 -0.20 0.78 16 40 H 0.41 7.40 5.42 -40.82 -0.22 7.18 16 41 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 43 H 0.40 9.67 7.90 -40.82 -0.32 9.35 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 45 H 0.06 0.91 7.83 -51.93 -0.41 0.50 16 46 H 0.10 1.72 5.77 -51.93 -0.30 1.42 16 47 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -31.75 395.01 -8.48 -40.23 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -7.96 Total: 16.59 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: -1.18 Total: 12.55 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.19 Total: -60.08 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.08 Total: -31.02 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.75 -8.48 -40.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000377031202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.777 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds