Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45191 * 109.47202 * 2 1 4 4 C 1.34752 * 117.00133 * 180.02562 * 3 2 1 5 5 O 1.21527 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.47283 * 120.00118 * 179.97438 * 4 3 2 7 7 C 1.41341 * 126.42921 * 89.97690 * 6 4 3 8 8 C 1.50703 * 125.99413 * 0.02562 * 7 6 4 9 9 N 1.30433 * 108.01756 * 180.02562 * 7 6 4 10 10 N 1.39934 * 108.91436 * 359.77899 * 9 7 6 11 11 C 1.46498 * 125.74114 * 180.23779 * 10 9 7 12 12 C 1.52994 * 109.47055 * 270.15298 * 11 10 9 13 13 H 1.09001 * 109.47340 * 304.99722 * 12 11 10 14 14 O 1.42900 * 109.47290 * 65.00024 * 12 11 10 15 15 C 1.53008 * 109.47003 * 185.00085 * 12 11 10 16 16 N 1.46904 * 109.46973 * 178.50835 * 15 12 11 17 17 C 1.46898 * 110.99760 * 164.00780 * 16 15 12 18 18 C 1.46900 * 111.00201 * 287.96806 * 16 15 12 19 19 C 1.50701 * 109.47240 * 170.00155 * 18 16 15 20 20 H 1.07997 * 119.99730 * 359.97438 * 19 18 16 21 21 C 1.37874 * 119.99860 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00129 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00002 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46895 * 90.00225 * 23 21 19 25 25 H 1.48500 * 109.47353 * 210.00454 * 23 21 19 26 26 H 1.48497 * 109.46979 * 330.00529 * 23 21 19 27 27 C 1.34220 * 108.51414 * 0.36678 * 10 9 7 28 28 C 1.50697 * 126.29813 * 179.90560 * 27 10 9 29 29 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46708 * 300.00267 * 1 2 3 31 31 H 1.08994 * 109.46784 * 60.00450 * 1 2 3 32 32 H 1.08997 * 109.47323 * 239.99330 * 2 1 3 33 33 H 1.09010 * 109.46823 * 119.99824 * 2 1 3 34 34 H 1.09002 * 109.46843 * 90.00577 * 8 7 6 35 35 H 1.08997 * 109.47631 * 210.00142 * 8 7 6 36 36 H 1.09002 * 109.46926 * 330.01243 * 8 7 6 37 37 H 1.09002 * 109.47327 * 30.15323 * 11 10 9 38 38 H 1.09001 * 109.47106 * 150.14960 * 11 10 9 39 39 H 0.96703 * 113.99619 * 60.00276 * 14 12 11 40 40 H 1.08997 * 109.46791 * 298.50688 * 15 12 11 41 41 H 1.08999 * 109.46867 * 58.51223 * 15 12 11 42 42 H 1.09002 * 109.46859 * 65.49136 * 17 16 15 43 43 H 1.09001 * 109.46990 * 185.48067 * 17 16 15 44 44 H 1.08991 * 109.47589 * 305.48596 * 17 16 15 45 45 H 1.09006 * 109.46678 * 289.99841 * 18 16 15 46 46 H 1.08999 * 109.47155 * 49.99429 * 18 16 15 47 47 H 0.97002 * 120.00163 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.47398 * 269.71907 * 28 27 10 49 49 H 1.09005 * 109.46993 * 29.71472 * 28 27 10 50 50 H 1.08998 * 109.47718 * 149.71312 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0902 0.5817 -0.0005 6 6 3.9129 2.9064 -0.0011 7 6 4.2337 3.6825 1.1357 8 6 4.0602 3.2624 2.5726 9 7 4.7062 4.8262 0.7233 10 7 4.7153 4.8351 -0.6760 11 6 5.1781 5.9381 -1.5218 12 6 4.0086 6.8789 -1.8181 13 1 3.1873 6.3111 -2.2554 14 8 3.5707 7.4917 -0.6037 15 6 4.4608 7.9607 -2.8011 16 7 3.3284 8.8429 -3.1133 17 6 3.7895 10.0914 -3.7350 18 6 2.3487 8.1595 -3.9684 19 6 1.0981 8.9946 -4.0661 20 1 1.0370 9.9384 -3.5447 21 6 0.0319 8.5537 -4.8210 22 7 0.1062 7.4041 -5.4555 23 14 -1.5186 9.5885 -4.9415 24 1 -1.4057 10.5168 -6.0951 25 1 -2.6929 8.7002 -5.1340 26 1 -1.6896 10.3713 -3.6912 27 6 4.2260 3.6641 -1.1129 28 6 4.0555 3.2495 -2.5516 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 4.9683 2.7688 2.9189 35 1 3.8676 4.1415 3.1875 36 1 3.2196 2.5730 2.6506 37 1 5.9644 6.4877 -1.0041 38 1 5.5696 5.5390 -2.4575 39 1 4.2519 8.0146 -0.1592 40 1 5.2643 8.5455 -2.3534 41 1 4.8195 7.4920 -3.7175 42 1 4.2333 9.8715 -4.7059 43 1 2.9434 10.7658 -3.8667 44 1 4.5339 10.5633 -3.0937 45 1 2.7706 8.0192 -4.9637 46 1 2.1047 7.1887 -3.5371 47 1 -0.6440 7.0937 -5.9863 48 1 3.0645 3.5420 -2.8991 49 1 4.8139 3.7387 -3.1630 50 1 4.1648 2.1682 -2.6337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414129424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -62.670458 kcal Electronic energy + Delta-G solvation = -30315.599189 eV Core-core repulsion = 26151.804902 eV Total energy + Delta-G solvation = -4163.794286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.60340 -40.03591 -38.08101 -36.53297 -35.66290 -34.14350 -32.54135 -32.39377 -31.65839 -30.59570 -28.52383 -27.71308 -27.32574 -25.84784 -24.17411 -23.49860 -22.42431 -21.80537 -20.21317 -20.10943 -19.56893 -17.86911 -17.07890 -16.50807 -16.49546 -16.31552 -15.88115 -15.35645 -15.15407 -14.72530 -14.44501 -14.27629 -13.89752 -13.76303 -13.63421 -13.41702 -13.40232 -13.15437 -12.95909 -12.77233 -12.62900 -12.46654 -12.19551 -12.04724 -11.99292 -11.88733 -11.74279 -11.52515 -11.27348 -11.01229 -10.96787 -10.89349 -10.71131 -10.63011 -10.43862 -10.41810 -10.02272 -9.80679 -9.24989 -9.06998 -8.56907 -8.45850 -7.31251 -6.06077 -4.06400 1.61595 2.07639 2.18284 2.35755 2.93990 3.30490 3.37056 3.42258 4.21593 4.33126 4.40167 4.50571 4.65072 4.75509 4.76669 4.80847 4.92906 4.97590 5.05413 5.09187 5.17375 5.28510 5.30163 5.34410 5.40671 5.47775 5.48575 5.53308 5.57992 5.62551 5.69024 5.76465 5.82945 5.85283 5.91751 5.99965 6.21752 6.24547 6.32838 6.46745 6.64828 6.80746 7.17539 7.22103 7.61548 7.73336 7.74486 7.98442 8.02164 8.12752 8.48560 9.00353 9.57852 11.05095 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.003124 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.004737 B = 8961.034203 C =10761.357815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.348 6.348 4 C 0.559 3.441 5 O -0.506 6.506 6 C -0.282 4.282 7 C 0.114 3.886 8 C -0.075 4.075 9 N -0.278 5.278 10 N -0.339 5.339 11 C 0.093 3.907 12 C 0.100 3.900 13 H 0.109 0.891 14 O -0.527 6.527 15 C 0.028 3.972 16 N -0.530 5.530 17 C 0.040 3.960 18 C 0.193 3.807 19 C -0.505 4.505 20 H 0.063 0.937 21 C 0.056 3.944 22 N -0.900 5.900 23 Si 0.897 3.103 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.146 3.854 28 C -0.105 4.105 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.365 0.635 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.011 0.989 43 H 0.075 0.925 44 H 0.044 0.956 45 H -0.011 1.011 46 H 0.030 0.970 47 H 0.261 0.739 48 H 0.098 0.902 49 H 0.081 0.919 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.605 -11.415 10.005 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 O -0.264 6.264 4 C 0.401 3.599 5 O -0.394 6.394 6 C -0.295 4.295 7 C -0.053 4.053 8 C -0.134 4.134 9 N -0.098 5.098 10 N -0.116 5.116 11 C -0.029 4.029 12 C 0.039 3.961 13 H 0.126 0.874 14 O -0.330 6.330 15 C -0.102 4.102 16 N -0.255 5.255 17 C -0.108 4.108 18 C 0.068 3.932 19 C -0.544 4.544 20 H 0.081 0.919 21 C -0.145 4.145 22 N -0.540 5.540 23 Si 0.725 3.275 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.197 1.197 27 C 0.014 3.986 28 C -0.163 4.163 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.211 0.789 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.030 0.970 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.007 0.993 46 H 0.048 0.952 47 H 0.071 0.929 48 H 0.116 0.884 49 H 0.099 0.901 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.415 -10.760 10.440 17.703 hybrid contribution -0.233 -0.369 -1.243 1.318 sum 9.182 -11.129 9.197 17.109 Atomic orbital electron populations 1.21815 0.92512 1.02837 1.03931 1.23052 0.95549 0.80341 1.02459 1.86733 1.24107 1.31963 1.83616 1.20131 0.80200 0.88423 0.71150 1.90818 1.60690 1.42537 1.45309 1.18792 1.20748 0.96549 0.93390 1.22188 0.97026 0.90238 0.95831 1.20232 1.02759 1.02172 0.88197 1.77135 1.24931 1.19678 0.88083 1.48091 1.47350 1.11544 1.04658 1.22754 0.99005 0.87247 0.93871 1.22344 0.95482 0.92047 0.86202 0.87373 1.86753 1.41055 1.68803 1.36397 1.22614 0.94717 0.95322 0.97584 1.62015 1.11064 1.04677 1.47702 1.22198 0.99781 0.93280 0.95548 1.19784 0.89744 0.94635 0.89028 1.21129 0.98568 1.05907 1.28767 0.91871 1.24967 0.98765 0.95229 0.95585 1.69941 1.31872 1.20002 1.32157 0.86504 0.82556 0.80017 0.78418 1.20770 1.21216 1.19710 1.21282 0.95051 0.86120 0.96146 1.20674 1.04650 1.02995 0.88028 0.90314 0.91383 0.91179 0.91236 0.91295 0.90173 0.89988 0.90700 0.87977 0.87865 0.78923 0.91606 0.94785 0.97022 0.90647 0.93752 0.99290 0.95230 0.92940 0.88355 0.90055 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.61 6.20 37.16 0.23 0.84 16 3 O -0.35 -4.73 10.23 -40.63 -0.42 -5.15 16 4 C 0.56 8.20 7.12 34.41 0.24 8.44 16 5 O -0.51 -8.13 16.90 -19.29 -0.33 -8.45 16 6 C -0.28 -4.24 6.00 -105.08 -0.63 -4.87 16 7 C 0.11 1.66 7.27 -82.01 -0.60 1.06 16 8 C -0.07 -0.81 10.28 36.01 0.37 -0.44 16 9 N -0.28 -4.26 12.50 33.90 0.42 -3.83 16 10 N -0.34 -4.82 3.52 -56.60 -0.20 -5.02 16 11 C 0.09 1.09 5.85 -4.05 -0.02 1.07 16 12 C 0.10 1.53 3.23 -26.73 -0.09 1.45 16 13 H 0.11 2.02 6.55 -51.93 -0.34 1.67 16 14 O -0.53 -8.96 13.18 -35.23 -0.46 -9.43 16 15 C 0.03 0.43 4.63 -3.82 -0.02 0.41 16 16 N -0.53 -10.88 4.60 -244.36 -1.12 -12.00 16 17 C 0.04 0.75 9.32 60.06 0.56 1.31 16 18 C 0.19 4.86 4.57 -4.98 -0.02 4.83 16 19 C -0.51 -14.09 8.54 -34.44 -0.29 -14.38 16 20 H 0.06 1.76 7.10 -52.49 -0.37 1.39 16 21 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 22 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 23 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.15 2.08 7.01 -81.59 -0.57 1.51 16 28 C -0.11 -1.20 9.93 36.00 0.36 -0.85 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 0.96 7.01 -51.93 -0.36 0.60 16 39 H 0.37 4.77 9.05 45.56 0.41 5.19 16 40 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 41 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 42 H 0.01 0.21 8.13 -51.93 -0.42 -0.22 16 43 H 0.07 1.51 6.90 -51.93 -0.36 1.15 16 44 H 0.04 0.68 7.97 -51.93 -0.41 0.26 16 45 H -0.01 -0.28 8.11 -51.93 -0.42 -0.71 16 46 H 0.03 0.80 6.38 -51.93 -0.33 0.46 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 49 H 0.08 0.76 7.04 -51.93 -0.37 0.39 16 50 H 0.09 0.91 7.96 -51.93 -0.41 0.49 16 LS Contribution 418.49 15.07 6.31 6.31 Total: -1.00 -35.20 418.49 -7.85 -43.06 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.57 Total: 2.47 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.19 Total: 0.99 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.16 Total: -46.42 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -1.21 Total: -23.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -35.20 -7.85 -43.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414129424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.614 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds