Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45191 * 109.47202 * 2 1 4 4 C 1.34752 * 117.00133 * 180.02562 * 3 2 1 5 5 O 1.21527 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.47283 * 120.00118 * 179.97438 * 4 3 2 7 7 C 1.41341 * 126.42921 * 89.97690 * 6 4 3 8 8 C 1.50703 * 125.99413 * 0.02562 * 7 6 4 9 9 N 1.30433 * 108.01756 * 180.02562 * 7 6 4 10 10 N 1.39934 * 108.91436 * 359.77899 * 9 7 6 11 11 C 1.46498 * 125.74114 * 180.23779 * 10 9 7 12 12 C 1.52994 * 109.47055 * 270.15298 * 11 10 9 13 13 H 1.09001 * 109.47340 * 304.99722 * 12 11 10 14 14 O 1.42900 * 109.47290 * 65.00024 * 12 11 10 15 15 C 1.53008 * 109.47003 * 185.00085 * 12 11 10 16 16 N 1.46904 * 109.46973 * 178.50835 * 15 12 11 17 17 C 1.46898 * 110.99760 * 164.00780 * 16 15 12 18 18 C 1.46900 * 111.00201 * 287.96806 * 16 15 12 19 19 C 1.50701 * 109.47240 * 170.00155 * 18 16 15 20 20 H 1.07997 * 119.99730 * 359.97438 * 19 18 16 21 21 C 1.37874 * 119.99860 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00129 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00002 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46895 * 90.00225 * 23 21 19 25 25 H 1.48500 * 109.47353 * 210.00454 * 23 21 19 26 26 H 1.48497 * 109.46979 * 330.00529 * 23 21 19 27 27 C 1.34220 * 108.51414 * 0.36678 * 10 9 7 28 28 C 1.50697 * 126.29813 * 179.90560 * 27 10 9 29 29 H 1.09000 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46708 * 300.00267 * 1 2 3 31 31 H 1.08994 * 109.46784 * 60.00450 * 1 2 3 32 32 H 1.08997 * 109.47323 * 239.99330 * 2 1 3 33 33 H 1.09010 * 109.46823 * 119.99824 * 2 1 3 34 34 H 1.09002 * 109.46843 * 90.00577 * 8 7 6 35 35 H 1.08997 * 109.47631 * 210.00142 * 8 7 6 36 36 H 1.09002 * 109.46926 * 330.01243 * 8 7 6 37 37 H 1.09002 * 109.47327 * 30.15323 * 11 10 9 38 38 H 1.09001 * 109.47106 * 150.14960 * 11 10 9 39 39 H 0.96703 * 113.99619 * 60.00276 * 14 12 11 40 40 H 1.08997 * 109.46791 * 298.50688 * 15 12 11 41 41 H 1.08999 * 109.46867 * 58.51223 * 15 12 11 42 42 H 1.09002 * 109.46859 * 65.49136 * 17 16 15 43 43 H 1.09001 * 109.46990 * 185.48067 * 17 16 15 44 44 H 1.08991 * 109.47589 * 305.48596 * 17 16 15 45 45 H 1.09006 * 109.46678 * 289.99841 * 18 16 15 46 46 H 1.08999 * 109.47155 * 49.99429 * 18 16 15 47 47 H 0.97002 * 120.00163 * 179.97438 * 22 21 19 48 48 H 1.09007 * 109.47398 * 269.71907 * 28 27 10 49 49 H 1.09005 * 109.46993 * 29.71472 * 28 27 10 50 50 H 1.08998 * 109.47718 * 149.71312 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0902 0.5817 -0.0005 6 6 3.9129 2.9064 -0.0011 7 6 4.2337 3.6825 1.1357 8 6 4.0602 3.2624 2.5726 9 7 4.7062 4.8262 0.7233 10 7 4.7153 4.8351 -0.6760 11 6 5.1781 5.9381 -1.5218 12 6 4.0086 6.8789 -1.8181 13 1 3.1873 6.3111 -2.2554 14 8 3.5707 7.4917 -0.6037 15 6 4.4608 7.9607 -2.8011 16 7 3.3284 8.8429 -3.1133 17 6 3.7895 10.0914 -3.7350 18 6 2.3487 8.1595 -3.9684 19 6 1.0981 8.9946 -4.0661 20 1 1.0370 9.9384 -3.5447 21 6 0.0319 8.5537 -4.8210 22 7 0.1062 7.4041 -5.4555 23 14 -1.5186 9.5885 -4.9415 24 1 -1.4057 10.5168 -6.0951 25 1 -2.6929 8.7002 -5.1340 26 1 -1.6896 10.3713 -3.6912 27 6 4.2260 3.6641 -1.1129 28 6 4.0555 3.2495 -2.5516 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 4.9683 2.7688 2.9189 35 1 3.8676 4.1415 3.1875 36 1 3.2196 2.5730 2.6506 37 1 5.9644 6.4877 -1.0041 38 1 5.5696 5.5390 -2.4575 39 1 4.2519 8.0146 -0.1592 40 1 5.2643 8.5455 -2.3534 41 1 4.8195 7.4920 -3.7175 42 1 4.2333 9.8715 -4.7059 43 1 2.9434 10.7658 -3.8667 44 1 4.5339 10.5633 -3.0937 45 1 2.7706 8.0192 -4.9637 46 1 2.1047 7.1887 -3.5371 47 1 -0.6440 7.0937 -5.9863 48 1 3.0645 3.5420 -2.8991 49 1 4.8139 3.7387 -3.1630 50 1 4.1648 2.1682 -2.6337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414129424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -88.168217 kcal Electronic energy + Delta-G solvation = -30316.704854 eV Core-core repulsion = 26151.804902 eV Total energy + Delta-G solvation = -4164.899952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.66322 -41.11872 -39.41926 -37.61751 -37.17061 -35.20890 -34.61123 -33.40311 -32.50534 -31.70022 -29.76451 -29.18646 -28.70304 -27.04484 -25.63993 -24.74628 -23.57082 -22.93181 -21.77380 -21.16691 -20.63080 -18.96039 -18.60349 -18.13032 -17.61247 -17.38192 -16.97548 -16.76118 -16.48921 -16.34755 -15.78668 -15.33918 -15.20828 -15.08799 -14.74437 -14.61487 -14.33372 -14.21206 -14.11877 -13.95180 -13.64552 -13.48876 -13.44848 -13.23261 -13.10569 -12.94974 -12.90887 -12.80120 -12.62358 -12.57663 -12.52446 -12.35179 -12.25436 -12.05686 -11.63065 -11.54317 -11.51259 -11.36288 -11.09735 -10.60458 -10.16521 -9.66961 -8.94710 -8.21133 -6.29372 0.53307 0.95414 1.17131 1.31216 1.38866 1.40779 1.51920 1.93935 2.39668 3.09395 3.13453 3.31864 3.40535 3.60484 3.73503 3.83039 3.93115 3.98565 4.00880 4.07051 4.16013 4.19215 4.27864 4.32448 4.34553 4.48752 4.55922 4.61388 4.63537 4.68787 4.77968 4.78311 4.81271 4.87454 4.91313 4.92812 5.02023 5.09933 5.12362 5.19551 5.31439 5.37339 5.45723 5.64712 5.79567 6.06860 6.33751 6.53624 6.64625 6.64867 6.85938 6.96534 7.39854 8.89632 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009941 B = 0.003124 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.004737 B = 8961.034203 C =10761.357815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.566 3.434 5 O -0.525 6.525 6 C -0.308 4.308 7 C 0.105 3.895 8 C -0.074 4.074 9 N -0.298 5.298 10 N -0.343 5.343 11 C 0.098 3.902 12 C 0.109 3.891 13 H 0.065 0.935 14 O -0.555 6.555 15 C 0.029 3.971 16 N -0.546 5.546 17 C 0.042 3.958 18 C 0.211 3.789 19 C -0.524 4.524 20 H 0.057 0.943 21 C 0.004 3.996 22 N -0.931 5.931 23 Si 0.962 3.038 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.269 1.269 27 C 0.138 3.862 28 C -0.103 4.103 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.382 0.618 40 H 0.106 0.894 41 H 0.043 0.957 42 H 0.012 0.988 43 H 0.051 0.949 44 H 0.084 0.916 45 H -0.036 1.036 46 H 0.004 0.996 47 H 0.264 0.736 48 H 0.087 0.913 49 H 0.104 0.896 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.457 -10.961 10.533 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.409 3.591 5 O -0.415 6.415 6 C -0.321 4.321 7 C -0.062 4.062 8 C -0.132 4.132 9 N -0.119 5.119 10 N -0.121 5.121 11 C -0.023 4.023 12 C 0.048 3.952 13 H 0.083 0.917 14 O -0.361 6.361 15 C -0.100 4.100 16 N -0.270 5.270 17 C -0.106 4.106 18 C 0.085 3.915 19 C -0.562 4.562 20 H 0.076 0.924 21 C -0.194 4.194 22 N -0.572 5.572 23 Si 0.787 3.213 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.194 1.194 27 C 0.006 3.994 28 C -0.161 4.161 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.230 0.770 40 H 0.124 0.876 41 H 0.061 0.939 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.102 0.898 45 H -0.018 1.018 46 H 0.022 0.978 47 H 0.073 0.927 48 H 0.106 0.894 49 H 0.123 0.877 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.284 -10.285 10.978 18.223 hybrid contribution -0.493 -0.526 -1.376 1.553 sum 9.791 -10.811 9.602 17.463 Atomic orbital electron populations 1.21847 0.90861 1.04468 1.03425 1.23378 0.96844 0.78871 1.03115 1.86726 1.23538 1.34114 1.83243 1.20072 0.80392 0.88124 0.70538 1.90794 1.61134 1.43056 1.46472 1.19098 1.21717 0.97122 0.94174 1.22757 0.96318 0.89926 0.97218 1.20354 1.03721 1.02773 0.86396 1.77067 1.25840 1.20188 0.88817 1.48280 1.47312 1.11902 1.04583 1.22832 0.97735 0.86444 0.95248 1.22115 0.95351 0.92203 0.85538 0.91679 1.86702 1.42791 1.69497 1.37101 1.22725 0.93848 0.95247 0.98203 1.61872 1.12825 1.05867 1.46451 1.22202 0.99749 0.92083 0.96531 1.19369 0.90355 0.93544 0.88255 1.21479 1.00011 1.06041 1.28708 0.92429 1.25824 1.01992 0.96378 0.95211 1.70053 1.32892 1.21461 1.32799 0.85487 0.78570 0.78533 0.78694 1.19557 1.20763 1.19377 1.21708 0.94448 0.86204 0.97086 1.20736 1.04760 1.03677 0.86951 0.87588 0.91432 0.92084 0.90899 0.90354 0.88621 0.89071 0.90228 0.85248 0.85135 0.77005 0.87593 0.93852 0.96926 0.92996 0.89781 1.01796 0.97787 0.92749 0.89446 0.87738 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.29 71.98 0.74 -1.53 16 2 C 0.05 1.02 6.20 71.98 0.45 1.46 16 3 O -0.36 -9.90 10.23 -56.63 -0.58 -10.48 16 4 C 0.57 16.74 7.12 70.20 0.50 17.24 16 5 O -0.53 -16.91 16.90 19.75 0.33 -16.58 16 6 C -0.31 -9.33 6.00 -20.16 -0.12 -9.45 16 7 C 0.10 3.02 7.27 43.53 0.32 3.34 16 8 C -0.07 -1.54 10.28 71.24 0.73 -0.81 16 9 N -0.30 -8.96 12.50 -46.65 -0.58 -9.54 16 10 N -0.34 -9.49 3.52 -332.97 -1.17 -10.67 16 11 C 0.10 2.11 5.85 86.38 0.51 2.61 16 12 C 0.11 3.25 3.23 30.59 0.10 3.35 16 13 H 0.07 2.52 6.55 -2.39 -0.02 2.51 16 14 O -0.56 -18.53 13.18 -148.98 -1.96 -20.49 16 15 C 0.03 0.84 4.63 86.31 0.40 1.24 16 16 N -0.55 -22.12 4.60 -927.03 -4.27 -26.38 16 17 C 0.04 1.50 9.32 127.69 1.19 2.69 16 18 C 0.21 10.91 4.57 85.56 0.39 11.30 16 19 C -0.52 -29.81 8.54 25.60 0.22 -29.60 16 20 H 0.06 3.26 7.10 -2.91 -0.02 3.24 16 21 C 0.00 0.23 5.46 84.65 0.46 0.69 16 22 N -0.93 -55.53 13.29 21.45 0.28 -55.24 16 23 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 27 C 0.14 3.92 7.01 42.17 0.30 4.21 16 28 C -0.10 -2.35 9.93 71.23 0.71 -1.64 16 29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.55 8.01 -2.39 -0.02 1.53 16 37 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.13 2.07 7.01 -2.39 -0.02 2.05 16 39 H 0.38 9.33 9.05 -74.06 -0.67 8.66 16 40 H 0.11 2.26 7.88 -2.39 -0.02 2.24 16 41 H 0.04 1.21 8.05 -2.39 -0.02 1.19 16 42 H 0.01 0.43 8.13 -2.39 -0.02 0.41 16 43 H 0.05 2.06 6.90 -2.39 -0.02 2.04 16 44 H 0.08 2.30 7.97 -2.39 -0.02 2.28 16 45 H -0.04 -1.97 8.11 -2.38 -0.02 -1.99 16 46 H 0.00 0.23 6.38 -2.39 -0.02 0.22 16 47 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 49 H 0.10 1.82 7.04 -2.38 -0.02 1.81 16 50 H 0.09 1.95 7.96 -2.39 -0.02 1.93 16 Total: -1.00 -78.18 418.49 1.23 -76.94 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.27 Total: 20.64 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 6.88 Total: 5.11 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -5.74 Total: -101.83 kcal Atomic # 8 Polarization: -45.34 SS G_CDS: -2.21 Total: -47.55 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -78.18 1.23 -76.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414129424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.225 kcal (2) G-P(sol) polarization free energy of solvation -78.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds