Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47216 * 2 1 4 4 C 1.34230 * 116.99890 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00260 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00090 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47335 * 179.97438 * 6 4 3 8 8 N 1.40083 * 126.03466 * 269.97626 * 7 6 4 9 9 C 1.30842 * 108.20126 * 179.73649 * 8 7 6 10 10 C 1.50696 * 125.89956 * 180.25396 * 9 8 7 11 11 C 1.39870 * 108.20287 * 0.44175 * 9 8 7 12 12 C 1.50699 * 126.03986 * 179.81576 * 11 9 8 13 13 N 1.46499 * 109.47168 * 269.39428 * 12 11 9 14 14 C 1.36944 * 120.00116 * 270.23140 * 13 12 11 15 15 H 1.08003 * 119.99771 * 324.30287 * 14 13 12 16 16 C 1.38804 * 119.99902 * 144.30187 * 14 13 12 17 17 N 1.31626 * 119.99966 * 157.59700 * 16 14 13 18 18 Si 1.86801 * 120.00438 * 337.59537 * 16 14 13 19 19 H 1.48500 * 109.46898 * 95.37144 * 18 16 14 20 20 H 1.48495 * 109.47210 * 215.37325 * 18 16 14 21 21 H 1.48504 * 109.46778 * 335.37516 * 18 16 14 22 22 C 1.46504 * 119.99979 * 89.95433 * 13 12 11 23 23 C 1.53000 * 109.46921 * 90.00151 * 22 13 12 24 24 O 1.42895 * 109.47109 * 65.00022 * 23 22 13 25 25 C 1.42907 * 113.99951 * 179.97438 * 24 23 22 26 26 C 1.34942 * 126.03336 * 89.99748 * 7 6 4 27 27 C 1.50704 * 126.13242 * 359.96179 * 26 7 6 28 28 H 1.08996 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47560 * 300.00336 * 1 2 3 30 30 H 1.09005 * 109.46951 * 60.00076 * 1 2 3 31 31 H 1.08999 * 109.47560 * 239.99664 * 2 1 3 32 32 H 1.09005 * 109.46951 * 119.99924 * 2 1 3 33 33 H 1.09003 * 109.47043 * 59.99787 * 6 4 3 34 34 H 1.09001 * 109.46604 * 299.99972 * 6 4 3 35 35 H 1.09005 * 109.47655 * 270.21735 * 10 9 8 36 36 H 1.09006 * 109.47031 * 30.21596 * 10 9 8 37 37 H 1.09003 * 109.47178 * 150.21172 * 10 9 8 38 38 H 1.09001 * 109.46870 * 149.39680 * 12 11 9 39 39 H 1.08993 * 109.47148 * 29.39513 * 12 11 9 40 40 H 0.96994 * 120.00502 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.46946 * 210.00034 * 22 13 12 42 42 H 1.08994 * 109.46889 * 330.00142 * 22 13 12 43 43 H 1.09001 * 109.46674 * 185.00054 * 23 22 13 44 44 H 1.09000 * 109.46811 * 304.99828 * 23 22 13 45 45 H 1.09000 * 109.46910 * 59.99876 * 25 24 23 46 46 H 1.08993 * 109.47202 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.46994 * 300.00057 * 25 24 23 48 48 H 1.09001 * 109.46896 * 265.45678 * 27 26 7 49 49 H 1.08998 * 109.46743 * 25.45780 * 27 26 7 50 50 H 1.09001 * 109.47174 * 145.45723 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3838 2.8607 0.0014 8 7 6.2058 2.8189 1.1349 9 6 7.4496 2.7475 0.7354 10 6 8.6618 2.6774 1.6280 11 6 7.4602 2.7518 -0.6633 12 6 8.6836 2.6872 -1.5408 13 7 9.1478 4.0458 -1.8323 14 6 8.6712 4.7116 -2.9300 15 1 8.4602 4.1702 -3.8404 16 6 8.4592 6.0821 -2.8725 17 7 8.4352 6.7914 -3.9810 18 14 8.2081 6.9201 -1.2220 19 1 9.5030 7.4658 -0.7418 20 1 7.2298 8.0270 -1.3726 21 1 7.6919 5.9334 -0.2394 22 6 10.1174 4.6945 -0.9460 23 6 11.5361 4.3818 -1.4262 24 8 11.7449 4.9712 -2.7110 25 6 13.0465 4.7381 -3.2529 26 6 6.1775 2.8183 -1.0891 27 6 5.7178 2.8405 -2.5242 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4701 0.8895 34 1 3.5853 3.4689 -0.8905 35 1 9.0108 3.6866 1.8468 36 1 8.3992 2.1741 2.5585 37 1 9.4522 2.1208 1.1244 38 1 8.4355 2.1802 -2.4733 39 1 9.4712 2.1367 -1.0264 40 1 8.2875 7.7492 -3.9409 41 1 9.9583 5.7727 -0.9606 42 1 9.9872 4.3217 0.0698 43 1 12.2574 4.7893 -0.7179 44 1 11.6660 3.3018 -1.4964 45 1 13.2082 3.6656 -3.3610 46 1 13.1252 5.2178 -4.2284 47 1 13.7989 5.1533 -2.5824 48 1 5.6313 1.8187 -2.8938 49 1 4.7475 3.3331 -2.5873 50 1 6.4421 3.3857 -3.1294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453597409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -21.145373 kcal Electronic energy + Delta-G solvation = -31159.399481 eV Core-core repulsion = 26997.405858 eV Total energy + Delta-G solvation = -4161.993623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12205 -40.28908 -37.31636 -36.84333 -35.51515 -33.87738 -32.16411 -31.93924 -31.32401 -29.77826 -29.06800 -27.35379 -26.14132 -25.59122 -24.79163 -23.40164 -22.70204 -21.46194 -20.79843 -19.09627 -18.76151 -18.06037 -16.87079 -16.79507 -16.59104 -16.04391 -15.65894 -15.37473 -14.74348 -14.67805 -14.52854 -14.09469 -13.77268 -13.53452 -13.47478 -13.20076 -13.10133 -12.89103 -12.82671 -12.57809 -12.44760 -12.18944 -12.08361 -11.97518 -11.90091 -11.75293 -11.65272 -11.41227 -11.25002 -11.01201 -10.79708 -10.70116 -10.65104 -10.54653 -10.27000 -9.89125 -9.63652 -9.40523 -8.81515 -8.60696 -8.36720 -7.66570 -6.73197 -5.81285 -3.17704 1.93420 2.01248 2.52299 2.99452 3.35158 3.42203 3.56568 3.65722 4.43679 4.57009 4.63717 4.64961 4.68203 4.69487 4.95608 4.97320 5.16188 5.19420 5.25765 5.35405 5.44696 5.50283 5.58273 5.63427 5.76157 5.76807 5.84362 5.90237 5.96669 5.99829 6.02357 6.07264 6.09481 6.17101 6.18459 6.23915 6.33869 6.41924 6.50030 6.62252 6.73047 6.89029 6.93652 7.22678 7.45017 7.62720 8.03781 8.21069 8.24268 8.51723 9.11449 9.89768 10.27561 11.34797 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.003226 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.429631 B = 8678.344580 C = 9166.253250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.443 3.557 5 O -0.485 6.485 6 C 0.151 3.849 7 N -0.377 5.377 8 N -0.306 5.306 9 C 0.086 3.914 10 C -0.069 4.069 11 C -0.224 4.224 12 C 0.219 3.781 13 N -0.589 5.589 14 C -0.241 4.241 15 H 0.078 0.922 16 C 0.045 3.955 17 N -0.900 5.900 18 Si 0.867 3.133 19 H -0.289 1.289 20 H -0.309 1.309 21 H -0.267 1.267 22 C 0.134 3.866 23 C 0.047 3.953 24 O -0.347 6.347 25 C 0.032 3.968 26 C 0.109 3.891 27 C -0.097 4.097 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.258 0.742 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.026 0.974 44 H 0.037 0.963 45 H 0.029 0.971 46 H 0.077 0.923 47 H 0.024 0.976 48 H 0.069 0.931 49 H 0.056 0.944 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.873 -10.974 7.645 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.276 6.276 4 C 0.283 3.717 5 O -0.370 6.370 6 C 0.026 3.974 7 N -0.161 5.161 8 N -0.127 5.127 9 C -0.081 4.081 10 C -0.128 4.128 11 C -0.237 4.237 12 C 0.092 3.908 13 N -0.309 5.309 14 C -0.370 4.370 15 H 0.095 0.905 16 C -0.155 4.155 17 N -0.542 5.542 18 Si 0.699 3.301 19 H -0.218 1.218 20 H -0.238 1.238 21 H -0.192 1.192 22 C 0.008 3.992 23 C -0.032 4.032 24 O -0.264 6.264 25 C -0.066 4.066 26 C -0.016 4.016 27 C -0.155 4.155 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.096 0.904 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.759 -10.995 8.433 16.393 hybrid contribution 0.468 0.416 0.490 0.795 sum -8.292 -10.579 8.923 16.134 Atomic orbital electron populations 1.21808 0.92463 1.03007 1.03614 1.23036 0.95359 0.80034 1.02710 1.86484 1.24132 1.32702 1.84331 1.24209 0.80878 0.93280 0.73312 1.90726 1.60274 1.42548 1.43493 1.20761 0.77706 0.91164 1.07783 1.47637 1.03431 1.60601 1.04453 1.77129 1.01442 1.27033 1.07139 1.22103 0.93054 0.98768 0.94175 1.20160 0.92697 1.02496 0.97422 1.20869 0.95852 1.13513 0.93451 1.19267 0.89226 0.87362 0.94909 1.44157 1.44725 1.13742 1.28316 1.18576 1.38845 0.90635 0.88945 0.90466 1.25245 0.98310 0.96622 0.95353 1.69869 1.51598 1.06170 1.26598 0.87093 0.76639 0.78908 0.87489 1.21793 1.23770 1.19223 1.21296 0.87051 0.98264 0.92565 1.23263 0.98853 0.96092 0.85007 1.88311 1.29645 1.75148 1.33294 1.22634 0.86199 0.99026 0.98706 1.20800 0.90593 1.00211 0.89954 1.20599 1.02508 1.02492 0.89934 0.90202 0.91443 0.91329 0.91124 0.91264 0.85098 0.85008 0.90892 0.91560 0.90467 0.92359 0.93573 0.93204 0.92414 0.92673 0.95563 0.94430 0.95239 0.90413 0.95714 0.91244 0.92492 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.13 10.22 -39.26 -0.40 -4.53 16 4 C 0.44 6.15 8.03 36.01 0.29 6.44 16 5 O -0.49 -8.46 16.18 -18.75 -0.30 -8.77 16 6 C 0.15 2.01 6.83 -5.19 -0.04 1.97 16 7 N -0.38 -6.81 3.10 -58.31 -0.18 -7.00 16 8 N -0.31 -6.02 12.58 33.67 0.42 -5.60 16 9 C 0.09 1.65 7.22 -82.41 -0.59 1.05 16 10 C -0.07 -1.04 9.38 36.00 0.34 -0.70 16 11 C -0.22 -4.45 5.68 -105.05 -0.60 -5.05 16 12 C 0.22 4.30 5.64 -5.19 -0.03 4.27 16 13 N -0.59 -13.41 2.08 -174.61 -0.36 -13.77 16 14 C -0.24 -6.42 8.25 -15.06 -0.12 -6.55 16 15 H 0.08 2.21 7.86 -52.48 -0.41 1.80 16 16 C 0.04 1.27 5.32 -17.43 -0.09 1.17 16 17 N -0.90 -27.34 13.97 55.49 0.78 -26.56 16 18 Si 0.87 22.78 24.95 -169.99 -4.24 18.54 16 19 H -0.29 -7.55 6.67 56.52 0.38 -7.18 16 20 H -0.31 -8.34 7.11 56.52 0.40 -7.94 16 21 H -0.27 -7.06 7.11 56.52 0.40 -6.65 16 22 C 0.13 2.89 4.93 -4.04 -0.02 2.87 16 23 C 0.05 0.91 6.28 37.16 0.23 1.15 16 24 O -0.35 -7.70 10.19 -35.23 -0.36 -8.06 16 25 C 0.03 0.54 11.01 101.05 1.11 1.65 16 26 C 0.11 2.07 6.93 -82.26 -0.57 1.50 16 27 C -0.10 -1.63 9.72 36.01 0.35 -1.28 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.67 8.13 -51.93 -0.42 0.24 16 32 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.13 1.41 6.98 -51.93 -0.36 1.04 16 35 H 0.07 1.08 7.42 -51.93 -0.39 0.70 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.03 7.24 -51.93 -0.38 0.65 16 38 H 0.06 1.14 7.79 -51.93 -0.40 0.73 16 39 H 0.05 0.80 7.17 -51.93 -0.37 0.43 16 40 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 41 H 0.06 1.42 2.99 -51.93 -0.16 1.27 16 42 H 0.06 1.04 6.37 -51.93 -0.33 0.71 16 43 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 49 H 0.06 0.82 6.96 -51.93 -0.36 0.46 16 50 H 0.11 2.22 6.52 -51.93 -0.34 1.88 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -36.34 407.28 -5.80 -42.14 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -8.15 Total: -1.27 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 0.87 Total: 8.73 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.65 Total: -52.93 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -1.06 Total: -21.35 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.24 Total: 18.54 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.34 -5.80 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.995 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds