Wall clock time and date at job start Sat Apr 11 2020 05:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47216 * 2 1 4 4 C 1.34230 * 116.99890 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00260 * 359.97438 * 4 3 2 6 6 C 1.50705 * 120.00090 * 179.97438 * 4 3 2 7 7 N 1.46500 * 109.47335 * 179.97438 * 6 4 3 8 8 N 1.40083 * 126.03466 * 269.97626 * 7 6 4 9 9 C 1.30842 * 108.20126 * 179.73649 * 8 7 6 10 10 C 1.50696 * 125.89956 * 180.25396 * 9 8 7 11 11 C 1.39870 * 108.20287 * 0.44175 * 9 8 7 12 12 C 1.50699 * 126.03986 * 179.81576 * 11 9 8 13 13 N 1.46499 * 109.47168 * 269.39428 * 12 11 9 14 14 C 1.36944 * 120.00116 * 270.23140 * 13 12 11 15 15 H 1.08003 * 119.99771 * 324.30287 * 14 13 12 16 16 C 1.38804 * 119.99902 * 144.30187 * 14 13 12 17 17 N 1.31626 * 119.99966 * 157.59700 * 16 14 13 18 18 Si 1.86801 * 120.00438 * 337.59537 * 16 14 13 19 19 H 1.48500 * 109.46898 * 95.37144 * 18 16 14 20 20 H 1.48495 * 109.47210 * 215.37325 * 18 16 14 21 21 H 1.48504 * 109.46778 * 335.37516 * 18 16 14 22 22 C 1.46504 * 119.99979 * 89.95433 * 13 12 11 23 23 C 1.53000 * 109.46921 * 90.00151 * 22 13 12 24 24 O 1.42895 * 109.47109 * 65.00022 * 23 22 13 25 25 C 1.42907 * 113.99951 * 179.97438 * 24 23 22 26 26 C 1.34942 * 126.03336 * 89.99748 * 7 6 4 27 27 C 1.50704 * 126.13242 * 359.96179 * 26 7 6 28 28 H 1.08996 * 109.47174 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47560 * 300.00336 * 1 2 3 30 30 H 1.09005 * 109.46951 * 60.00076 * 1 2 3 31 31 H 1.08999 * 109.47560 * 239.99664 * 2 1 3 32 32 H 1.09005 * 109.46951 * 119.99924 * 2 1 3 33 33 H 1.09003 * 109.47043 * 59.99787 * 6 4 3 34 34 H 1.09001 * 109.46604 * 299.99972 * 6 4 3 35 35 H 1.09005 * 109.47655 * 270.21735 * 10 9 8 36 36 H 1.09006 * 109.47031 * 30.21596 * 10 9 8 37 37 H 1.09003 * 109.47178 * 150.21172 * 10 9 8 38 38 H 1.09001 * 109.46870 * 149.39680 * 12 11 9 39 39 H 1.08993 * 109.47148 * 29.39513 * 12 11 9 40 40 H 0.96994 * 120.00502 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.46946 * 210.00034 * 22 13 12 42 42 H 1.08994 * 109.46889 * 330.00142 * 22 13 12 43 43 H 1.09001 * 109.46674 * 185.00054 * 23 22 13 44 44 H 1.09000 * 109.46811 * 304.99828 * 23 22 13 45 45 H 1.09000 * 109.46910 * 59.99876 * 25 24 23 46 46 H 1.08993 * 109.47202 * 180.02562 * 25 24 23 47 47 H 1.09003 * 109.46994 * 300.00057 * 25 24 23 48 48 H 1.09001 * 109.46896 * 265.45678 * 27 26 7 49 49 H 1.08998 * 109.46743 * 25.45780 * 27 26 7 50 50 H 1.09001 * 109.47174 * 145.45723 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 7 5.3838 2.8607 0.0014 8 7 6.2058 2.8189 1.1349 9 6 7.4496 2.7475 0.7354 10 6 8.6618 2.6774 1.6280 11 6 7.4602 2.7518 -0.6633 12 6 8.6836 2.6872 -1.5408 13 7 9.1478 4.0458 -1.8323 14 6 8.6712 4.7116 -2.9300 15 1 8.4602 4.1702 -3.8404 16 6 8.4592 6.0821 -2.8725 17 7 8.4352 6.7914 -3.9810 18 14 8.2081 6.9201 -1.2220 19 1 9.5030 7.4658 -0.7418 20 1 7.2298 8.0270 -1.3726 21 1 7.6919 5.9334 -0.2394 22 6 10.1174 4.6945 -0.9460 23 6 11.5361 4.3818 -1.4262 24 8 11.7449 4.9712 -2.7110 25 6 13.0465 4.7381 -3.2529 26 6 6.1775 2.8183 -1.0891 27 6 5.7178 2.8405 -2.5242 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5844 3.4701 0.8895 34 1 3.5853 3.4689 -0.8905 35 1 9.0108 3.6866 1.8468 36 1 8.3992 2.1741 2.5585 37 1 9.4522 2.1208 1.1244 38 1 8.4355 2.1802 -2.4733 39 1 9.4712 2.1367 -1.0264 40 1 8.2875 7.7492 -3.9409 41 1 9.9583 5.7727 -0.9606 42 1 9.9872 4.3217 0.0698 43 1 12.2574 4.7893 -0.7179 44 1 11.6660 3.3018 -1.4964 45 1 13.2082 3.6656 -3.3610 46 1 13.1252 5.2178 -4.2284 47 1 13.7989 5.1533 -2.5824 48 1 5.6313 1.8187 -2.8938 49 1 4.7475 3.3331 -2.5873 50 1 6.4421 3.3857 -3.1294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453597409.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:48 Heat of formation + Delta-G solvation = -45.069633 kcal Electronic energy + Delta-G solvation = -31160.436915 eV Core-core repulsion = 26997.405858 eV Total energy + Delta-G solvation = -4163.031057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.42361 -41.42388 -38.89913 -37.89656 -37.18651 -35.19404 -33.75491 -33.17693 -32.69458 -30.96843 -30.56561 -28.95126 -27.38918 -27.02634 -26.36036 -24.51513 -24.07878 -22.72142 -22.28011 -20.47942 -20.18304 -19.11252 -18.61721 -17.95625 -17.82667 -17.54789 -17.02862 -16.95716 -16.34064 -15.96970 -15.77842 -15.51545 -15.25677 -14.86463 -14.74236 -14.59586 -14.41335 -14.19406 -14.06672 -13.87130 -13.66733 -13.62390 -13.33984 -13.15456 -13.09026 -12.94251 -12.91975 -12.76908 -12.63836 -12.56944 -12.33237 -12.20518 -12.04066 -11.80103 -11.62291 -11.59639 -11.39411 -11.26406 -10.49873 -10.27495 -9.96898 -9.14400 -8.62858 -7.99289 -5.29008 0.72969 0.94002 1.26850 1.32204 1.42817 1.54204 1.85453 1.91926 2.55691 3.21817 3.26207 3.46884 3.54479 3.69827 3.82927 3.94192 3.98488 4.02570 4.06024 4.24047 4.28565 4.39016 4.44214 4.48010 4.59323 4.62106 4.64476 4.70491 4.72336 4.74345 4.76021 4.81042 4.84564 4.88793 4.94249 5.03374 5.06723 5.10912 5.14178 5.20508 5.31447 5.32710 5.49724 5.86765 6.11972 6.12514 6.34885 6.54199 6.66602 6.82410 7.16830 7.84695 8.25437 9.21427 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016778 B = 0.003226 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.429631 B = 8678.344580 C = 9166.253250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.453 3.547 5 O -0.526 6.526 6 C 0.139 3.861 7 N -0.379 5.379 8 N -0.329 5.329 9 C 0.075 3.925 10 C -0.069 4.069 11 C -0.251 4.251 12 C 0.224 3.776 13 N -0.597 5.597 14 C -0.202 4.202 15 H 0.049 0.951 16 C -0.006 4.006 17 N -0.949 5.949 18 Si 0.925 3.075 19 H -0.290 1.290 20 H -0.325 1.325 21 H -0.268 1.268 22 C 0.127 3.873 23 C 0.049 3.951 24 O -0.398 6.398 25 C 0.029 3.971 26 C 0.098 3.902 27 C -0.091 4.091 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.073 0.927 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.110 -12.325 9.380 17.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.269 6.269 4 C 0.295 3.705 5 O -0.415 6.415 6 C 0.016 3.984 7 N -0.163 5.163 8 N -0.150 5.150 9 C -0.092 4.092 10 C -0.127 4.127 11 C -0.263 4.263 12 C 0.099 3.901 13 N -0.318 5.318 14 C -0.332 4.332 15 H 0.066 0.934 16 C -0.201 4.201 17 N -0.596 5.596 18 Si 0.758 3.242 19 H -0.218 1.218 20 H -0.255 1.255 21 H -0.193 1.193 22 C 0.002 3.998 23 C -0.029 4.029 24 O -0.316 6.316 25 C -0.067 4.067 26 C -0.028 4.028 27 C -0.149 4.149 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.045 0.955 42 H 0.102 0.898 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.103 0.897 49 H 0.098 0.902 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.014 -12.378 10.220 18.409 hybrid contribution 0.480 0.660 -0.051 0.818 sum -8.534 -11.718 10.169 17.707 Atomic orbital electron populations 1.21828 0.89869 1.04507 1.03959 1.23334 0.97324 0.78829 1.02457 1.86489 1.22668 1.34135 1.83611 1.24204 0.81320 0.92877 0.72111 1.90714 1.61290 1.43762 1.45685 1.21214 0.75454 0.91455 1.10242 1.47895 1.04959 1.59731 1.03711 1.77065 1.02000 1.27781 1.08176 1.22683 0.94004 0.98087 0.94384 1.20297 0.91676 1.03130 0.97642 1.20934 0.96082 1.15243 0.94081 1.19264 0.90243 0.85552 0.95084 1.44238 1.45444 1.14493 1.27643 1.18422 1.35541 0.90152 0.89126 0.93374 1.25615 1.00005 0.97444 0.97027 1.69977 1.55333 1.06022 1.28240 0.86160 0.75838 0.77437 0.84714 1.21826 1.25509 1.19294 1.21404 0.88209 0.96331 0.93854 1.23226 0.97782 0.97243 0.84685 1.88226 1.32555 1.76129 1.34740 1.22778 0.84675 1.00337 0.98944 1.21162 0.91132 0.99511 0.90954 1.20531 1.02676 1.03248 0.88437 0.88123 0.91070 0.90963 0.91374 0.91656 0.82866 0.82296 0.90607 0.90127 0.88650 0.93009 0.90846 0.93851 0.95510 0.89819 0.92729 0.92531 0.93543 0.90702 0.93354 0.89701 0.90213 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 10.29 71.98 0.74 -0.76 16 2 C 0.05 0.93 6.19 71.98 0.45 1.38 16 3 O -0.35 -7.51 10.22 -51.41 -0.53 -8.04 16 4 C 0.45 11.94 8.03 71.24 0.57 12.51 16 5 O -0.53 -18.00 16.18 21.96 0.36 -17.64 16 6 C 0.14 3.45 6.83 85.63 0.59 4.03 16 7 N -0.38 -13.18 3.10 -338.38 -1.05 -14.22 16 8 N -0.33 -12.44 12.58 -47.39 -0.60 -13.04 16 9 C 0.08 2.74 7.22 43.10 0.31 3.06 16 10 C -0.07 -1.89 9.38 71.23 0.67 -1.22 16 11 C -0.25 -9.63 5.68 -20.14 -0.11 -9.75 16 12 C 0.22 8.50 5.64 85.63 0.48 8.98 16 13 N -0.60 -26.63 2.08 -706.36 -1.47 -28.10 16 14 C -0.20 -10.90 8.25 84.03 0.69 -10.21 16 15 H 0.05 2.86 7.86 -2.91 -0.02 2.84 16 16 C -0.01 -0.34 5.32 84.86 0.45 0.12 16 17 N -0.95 -59.55 13.97 21.65 0.30 -59.25 16 18 Si 0.92 48.37 24.95 68.60 1.71 50.08 16 19 H -0.29 -14.92 6.67 99.48 0.66 -14.25 16 20 H -0.32 -17.57 7.11 99.48 0.71 -16.87 16 21 H -0.27 -13.81 7.11 99.48 0.71 -13.10 16 22 C 0.13 5.23 4.93 86.38 0.43 5.65 16 23 C 0.05 1.77 6.28 71.98 0.45 2.22 16 24 O -0.40 -17.20 10.19 -148.98 -1.52 -18.72 16 25 C 0.03 0.93 11.01 113.37 1.25 2.18 16 26 C 0.10 3.64 6.93 41.41 0.29 3.93 16 27 C -0.09 -2.99 9.72 71.24 0.69 -2.30 16 28 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 1.21 8.13 -2.39 -0.02 1.20 16 32 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 33 H 0.15 3.08 8.14 -2.39 -0.02 3.06 16 34 H 0.16 3.00 6.98 -2.39 -0.02 2.98 16 35 H 0.08 2.03 7.42 -2.38 -0.02 2.01 16 36 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.09 2.20 7.24 -2.39 -0.02 2.19 16 38 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16 39 H 0.07 2.35 7.17 -2.39 -0.02 2.34 16 40 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 41 H 0.03 1.29 2.99 -2.39 -0.01 1.28 16 42 H 0.08 2.91 6.37 -2.39 -0.02 2.90 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.08 2.19 6.96 -2.39 -0.02 2.17 16 50 H 0.08 3.33 6.52 -2.39 -0.02 3.31 16 Total: -1.00 -80.63 407.28 6.04 -74.59 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.89 Total: 14.52 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 7.94 Total: 19.82 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -2.81 Total: -114.61 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.69 Total: -44.40 kcal Atomic # 14 Polarization: 48.37 SS G_CDS: 1.71 Total: 50.08 kcal Total: -80.63 6.04 -74.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597409.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.520 kcal (2) G-P(sol) polarization free energy of solvation -80.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds