Wall clock time and date at job start Sat Apr 11 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45195 * 109.46929 * 2 1 4 4 C 1.34639 * 116.99986 * 179.97438 * 3 2 1 5 5 O 1.21512 * 120.00158 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00156 * 179.97438 * 4 3 2 7 7 C 1.46930 * 120.62733 * 0.02562 * 6 4 3 8 8 C 1.53195 * 108.77207 * 126.37205 * 7 6 4 9 9 C 1.53043 * 109.31727 * 54.63460 * 8 7 6 10 10 C 1.53040 * 109.53576 * 298.63670 * 9 8 7 11 11 H 1.09008 * 109.49676 * 301.41341 * 10 9 8 12 12 C 1.50701 * 109.49788 * 181.31557 * 10 9 8 13 13 O 1.21279 * 119.99755 * 333.80691 * 12 10 9 14 14 N 1.34777 * 119.99993 * 153.81139 * 12 10 9 15 15 C 1.46965 * 120.59603 * 4.61721 * 14 12 10 16 16 C 1.53815 * 108.39584 * 124.76139 * 15 14 12 17 17 N 1.46961 * 108.57845 * 49.64129 * 16 15 14 18 18 C 1.36933 * 120.59388 * 124.62576 * 17 16 15 19 19 H 1.08001 * 119.99944 * 214.00673 * 18 17 16 20 20 C 1.38810 * 120.00078 * 34.00218 * 18 17 16 21 21 N 1.31616 * 120.00002 * 15.99271 * 20 18 17 22 22 Si 1.86800 * 120.00120 * 195.98934 * 20 18 17 23 23 H 1.48504 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46948 * 119.99722 * 22 20 18 25 25 H 1.48490 * 109.47645 * 240.00136 * 22 20 18 26 26 C 1.46968 * 118.81004 * 304.64725 * 17 16 15 27 27 C 1.46961 * 120.59294 * 184.90453 * 14 12 10 28 28 C 1.46923 * 120.63408 * 179.97438 * 6 4 3 29 29 H 1.09003 * 109.46955 * 60.00595 * 1 2 3 30 30 H 1.09009 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47748 * 299.99901 * 1 2 3 32 32 H 1.08997 * 109.47316 * 239.99935 * 2 1 3 33 33 H 1.09003 * 109.46955 * 119.99405 * 2 1 3 34 34 H 1.09001 * 109.58700 * 246.15420 * 7 6 4 35 35 H 1.08995 * 109.59250 * 6.58418 * 7 6 4 36 36 H 1.09005 * 109.49814 * 174.58755 * 8 7 6 37 37 H 1.09001 * 109.49887 * 294.68025 * 8 7 6 38 38 H 1.08996 * 109.46097 * 178.61356 * 9 8 7 39 39 H 1.09005 * 109.45682 * 58.64968 * 9 8 7 40 40 H 1.08996 * 109.61525 * 244.55031 * 15 14 12 41 41 H 1.09008 * 109.60590 * 5.06006 * 15 14 12 42 42 H 1.09007 * 109.73987 * 289.84914 * 16 15 14 43 43 H 1.09000 * 109.66994 * 169.39020 * 16 15 14 44 44 H 0.96998 * 120.00057 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.60941 * 295.47718 * 26 17 16 46 46 H 1.09000 * 109.60598 * 174.97588 * 26 17 16 47 47 H 1.09002 * 109.60793 * 354.94510 * 27 14 12 48 48 H 1.09005 * 109.61270 * 115.28467 * 27 14 12 49 49 H 1.09003 * 109.58451 * 113.83888 * 28 6 4 50 50 H 1.09004 * 109.70331 * 353.49003 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0889 0.5818 0.0015 6 7 3.8638 2.7908 0.0000 7 6 2.9816 3.9658 -0.0005 8 6 3.3733 4.8770 1.1670 9 6 4.8640 5.2102 1.0711 10 6 5.6837 3.9215 1.1680 11 1 5.4631 3.4200 2.1104 12 6 7.1523 4.2537 1.1059 13 8 7.5227 5.2616 0.5422 14 7 8.0541 3.4306 1.6767 15 6 7.6308 2.1565 2.2746 16 6 8.4450 1.0228 1.6283 17 7 9.8684 1.3863 1.6696 18 6 10.7845 0.5505 2.2504 19 1 11.6373 0.9617 2.7701 20 6 10.6171 -0.8252 2.1713 21 7 9.7800 -1.3369 1.2940 22 14 11.5799 -1.9503 3.3100 23 1 12.4462 -1.1330 4.1970 24 1 10.6353 -2.7442 4.1362 25 1 12.4231 -2.8679 2.5025 26 6 10.2909 2.6630 1.0769 27 6 9.4775 3.7940 1.7181 28 6 5.3182 2.9994 0.0012 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0942 4.5069 -0.9400 35 1 1.9464 3.6456 0.1173 36 1 2.7911 5.7974 1.1214 37 1 3.1746 4.3666 2.1094 38 1 5.1399 5.8784 1.8868 39 1 5.0663 5.6983 0.1177 40 1 7.8156 2.1770 3.3486 41 1 6.5687 1.9993 2.0866 42 1 8.1316 0.8884 0.5929 43 1 8.2877 0.0968 2.1813 44 1 9.6632 -2.2982 1.2384 45 1 10.1090 2.6454 0.0023 46 1 11.3522 2.8217 1.2681 47 1 9.6352 4.7185 1.1626 48 1 9.7901 3.9314 2.7532 49 1 5.6217 3.4615 -0.9383 50 1 5.8266 2.0424 0.1187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491680468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:57 Heat of formation + Delta-G solvation = -87.738480 kcal Electronic energy + Delta-G solvation = -31458.361836 eV Core-core repulsion = 27293.480519 eV Total energy + Delta-G solvation = -4164.881317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.88384 -39.88979 -38.02816 -36.77991 -36.29085 -33.86978 -33.23772 -31.92891 -31.67563 -30.90780 -30.05500 -27.00310 -25.85024 -24.63627 -23.44164 -23.17671 -22.78025 -21.73278 -20.58280 -19.90985 -18.59719 -18.10030 -17.17142 -17.00204 -16.73964 -16.10114 -15.58210 -15.28408 -14.93149 -14.76332 -14.59883 -14.32685 -14.02303 -13.75000 -13.52557 -13.39199 -13.33386 -13.28226 -13.18355 -13.01243 -12.72384 -12.28635 -12.09689 -11.81268 -11.70023 -11.54132 -11.36457 -11.20458 -11.03224 -10.83341 -10.74406 -10.72824 -10.64097 -10.49739 -10.46705 -10.22869 -10.05198 -9.80834 -9.38775 -8.89065 -8.56568 -8.24975 -6.62204 -5.83455 -3.33907 1.94355 2.74295 2.93573 3.34478 3.37854 3.43006 3.45154 3.69704 4.44988 4.52678 4.59548 4.69787 4.74686 4.77231 4.83801 4.96241 5.08323 5.10727 5.25601 5.27093 5.32102 5.36696 5.47177 5.54577 5.58778 5.62396 5.66793 5.69834 5.73509 5.83091 5.87797 5.94701 5.97863 6.13560 6.15959 6.18220 6.24736 6.28963 6.35935 6.44763 6.81294 6.92899 7.20844 7.21191 7.44899 7.76480 7.88252 8.21871 8.41714 8.49962 9.14275 9.75552 10.36401 11.23834 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.003622 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.284925 B = 7727.977860 C = 9958.632723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 O -0.372 6.372 4 C 0.648 3.352 5 O -0.559 6.559 6 N -0.593 5.593 7 C 0.111 3.889 8 C -0.134 4.134 9 C -0.101 4.101 10 C -0.122 4.122 11 H 0.096 0.904 12 C 0.518 3.482 13 O -0.555 6.555 14 N -0.593 5.593 15 C 0.077 3.923 16 C 0.164 3.836 17 N -0.589 5.589 18 C -0.263 4.263 19 H 0.065 0.935 20 C 0.010 3.990 21 N -0.895 5.895 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.132 3.868 27 C 0.095 3.905 28 C 0.139 3.861 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.090 0.910 44 H 0.255 0.745 45 H 0.024 0.976 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.127 9.381 -0.743 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 O -0.287 6.287 4 C 0.402 3.598 5 O -0.447 6.447 6 N -0.334 5.334 7 C -0.012 4.012 8 C -0.173 4.173 9 C -0.139 4.139 10 C -0.144 4.144 11 H 0.115 0.885 12 C 0.304 3.696 13 O -0.434 6.434 14 N -0.324 5.324 15 C -0.047 4.047 16 C 0.037 3.963 17 N -0.312 5.312 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.190 4.190 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.005 3.995 27 C -0.029 4.029 28 C 0.017 3.983 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.080 0.920 49 H 0.098 0.902 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.764 9.324 -1.073 20.981 hybrid contribution 0.484 -0.912 0.645 1.217 sum -18.280 8.413 -0.428 20.128 Atomic orbital electron populations 1.21819 0.92663 1.03036 1.03334 1.22959 0.94616 0.78790 1.03084 1.86191 1.22143 1.33134 1.87187 1.17988 0.81217 0.83996 0.76620 1.91085 1.59540 1.39066 1.54976 1.46840 1.07046 1.03130 1.76338 1.21772 0.94263 0.86077 0.99049 1.21958 0.96666 0.99829 0.98811 1.21372 0.93122 0.95493 1.03901 1.21694 0.93054 0.98550 1.01122 0.88540 1.20222 0.87399 0.83257 0.78702 1.90635 1.80972 1.27460 1.44330 1.48099 1.07927 1.20071 1.56300 1.22850 0.99135 0.84624 0.98132 1.21129 0.82895 0.94176 0.98056 1.43923 1.02685 1.18269 1.66341 1.19150 1.05692 0.86809 1.27606 0.91762 1.25226 0.98823 0.97485 0.97432 1.70031 1.38825 1.11381 1.33527 0.86249 0.79437 0.80754 0.80453 1.20132 1.21452 1.21592 1.21303 0.96759 0.86375 0.95074 1.22236 0.79925 0.99571 1.01193 1.21538 0.77744 1.01371 0.97648 0.91586 0.90033 0.91559 0.91084 0.91004 0.90982 0.88929 0.90075 0.91308 0.91133 0.90346 0.91766 0.90913 0.95467 0.89186 0.93455 0.95846 0.91524 0.89997 0.91955 0.90239 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.08 0.79 6.19 37.16 0.23 1.02 16 3 O -0.37 -4.42 8.86 -40.32 -0.36 -4.78 16 4 C 0.65 9.40 8.43 54.06 0.46 9.86 16 5 O -0.56 -10.27 15.55 -19.28 -0.30 -10.57 16 6 N -0.59 -7.44 2.97 -178.59 -0.53 -7.97 16 7 C 0.11 1.00 6.45 -3.71 -0.02 0.97 16 8 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 9 C -0.10 -1.10 4.69 -26.69 -0.13 -1.23 16 10 C -0.12 -1.63 1.80 -91.68 -0.17 -1.80 16 11 H 0.10 1.26 6.62 -51.92 -0.34 0.91 16 12 C 0.52 8.75 6.79 -10.98 -0.07 8.68 16 13 O -0.55 -10.66 15.55 5.56 0.09 -10.57 16 14 N -0.59 -10.71 2.94 -172.22 -0.51 -11.22 16 15 C 0.08 1.41 6.25 -3.36 -0.02 1.39 16 16 C 0.16 3.83 5.49 -3.37 -0.02 3.81 16 17 N -0.59 -14.59 2.93 -171.77 -0.50 -15.09 16 18 C -0.26 -7.09 9.51 -15.06 -0.14 -7.23 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 20 C 0.01 0.29 4.89 -17.43 -0.09 0.20 16 21 N -0.90 -25.89 11.55 55.49 0.64 -25.25 16 22 Si 0.90 21.37 29.58 -169.99 -5.03 16.35 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.13 2.81 6.67 -3.60 -0.02 2.78 16 27 C 0.09 1.75 6.60 -3.60 -0.02 1.73 16 28 C 0.14 1.95 5.52 -3.74 -0.02 1.93 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.74 6.93 -51.93 -0.36 0.38 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.20 4.83 -51.92 -0.25 0.95 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 2.33 6.40 -51.93 -0.33 2.00 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.07 1.36 7.93 -51.93 -0.41 0.94 16 47 H 0.08 1.47 6.99 -51.93 -0.36 1.11 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.11 1.81 6.12 -51.93 -0.32 1.49 16 LS Contribution 390.83 15.07 5.89 5.89 Total: -1.00 -33.09 390.83 -8.69 -41.77 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.26 Total: 1.20 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: 0.18 Total: 20.24 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: -0.90 Total: -59.53 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.57 Total: -25.92 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.09 -8.69 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491680468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.965 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds