Wall clock time and date at job start Sat Apr 11 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45195 * 109.46929 * 2 1 4 4 C 1.34639 * 116.99986 * 179.97438 * 3 2 1 5 5 O 1.21512 * 120.00158 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00156 * 179.97438 * 4 3 2 7 7 C 1.46930 * 120.62733 * 0.02562 * 6 4 3 8 8 C 1.53195 * 108.77207 * 126.37205 * 7 6 4 9 9 C 1.53043 * 109.31727 * 54.63460 * 8 7 6 10 10 C 1.53040 * 109.53576 * 298.63670 * 9 8 7 11 11 H 1.09008 * 109.49676 * 301.41341 * 10 9 8 12 12 C 1.50701 * 109.49788 * 181.31557 * 10 9 8 13 13 O 1.21279 * 119.99755 * 333.80691 * 12 10 9 14 14 N 1.34777 * 119.99993 * 153.81139 * 12 10 9 15 15 C 1.46965 * 120.59603 * 4.61721 * 14 12 10 16 16 C 1.53815 * 108.39584 * 124.76139 * 15 14 12 17 17 N 1.46961 * 108.57845 * 49.64129 * 16 15 14 18 18 C 1.36933 * 120.59388 * 124.62576 * 17 16 15 19 19 H 1.08001 * 119.99944 * 214.00673 * 18 17 16 20 20 C 1.38810 * 120.00078 * 34.00218 * 18 17 16 21 21 N 1.31616 * 120.00002 * 15.99271 * 20 18 17 22 22 Si 1.86800 * 120.00120 * 195.98934 * 20 18 17 23 23 H 1.48504 * 109.47029 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46948 * 119.99722 * 22 20 18 25 25 H 1.48490 * 109.47645 * 240.00136 * 22 20 18 26 26 C 1.46968 * 118.81004 * 304.64725 * 17 16 15 27 27 C 1.46961 * 120.59294 * 184.90453 * 14 12 10 28 28 C 1.46923 * 120.63408 * 179.97438 * 6 4 3 29 29 H 1.09003 * 109.46955 * 60.00595 * 1 2 3 30 30 H 1.09009 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47748 * 299.99901 * 1 2 3 32 32 H 1.08997 * 109.47316 * 239.99935 * 2 1 3 33 33 H 1.09003 * 109.46955 * 119.99405 * 2 1 3 34 34 H 1.09001 * 109.58700 * 246.15420 * 7 6 4 35 35 H 1.08995 * 109.59250 * 6.58418 * 7 6 4 36 36 H 1.09005 * 109.49814 * 174.58755 * 8 7 6 37 37 H 1.09001 * 109.49887 * 294.68025 * 8 7 6 38 38 H 1.08996 * 109.46097 * 178.61356 * 9 8 7 39 39 H 1.09005 * 109.45682 * 58.64968 * 9 8 7 40 40 H 1.08996 * 109.61525 * 244.55031 * 15 14 12 41 41 H 1.09008 * 109.60590 * 5.06006 * 15 14 12 42 42 H 1.09007 * 109.73987 * 289.84914 * 16 15 14 43 43 H 1.09000 * 109.66994 * 169.39020 * 16 15 14 44 44 H 0.96998 * 120.00057 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.60941 * 295.47718 * 26 17 16 46 46 H 1.09000 * 109.60598 * 174.97588 * 26 17 16 47 47 H 1.09002 * 109.60793 * 354.94510 * 27 14 12 48 48 H 1.09005 * 109.61270 * 115.28467 * 27 14 12 49 49 H 1.09003 * 109.58451 * 113.83888 * 28 6 4 50 50 H 1.09004 * 109.70331 * 353.49003 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3689 0.0000 4 6 3.3487 1.5454 0.0005 5 8 4.0889 0.5818 0.0015 6 7 3.8638 2.7908 0.0000 7 6 2.9816 3.9658 -0.0005 8 6 3.3733 4.8770 1.1670 9 6 4.8640 5.2102 1.0711 10 6 5.6837 3.9215 1.1680 11 1 5.4631 3.4200 2.1104 12 6 7.1523 4.2537 1.1059 13 8 7.5227 5.2616 0.5422 14 7 8.0541 3.4306 1.6767 15 6 7.6308 2.1565 2.2746 16 6 8.4450 1.0228 1.6283 17 7 9.8684 1.3863 1.6696 18 6 10.7845 0.5505 2.2504 19 1 11.6373 0.9617 2.7701 20 6 10.6171 -0.8252 2.1713 21 7 9.7800 -1.3369 1.2940 22 14 11.5799 -1.9503 3.3100 23 1 12.4462 -1.1330 4.1970 24 1 10.6353 -2.7442 4.1362 25 1 12.4231 -2.8679 2.5025 26 6 10.2909 2.6630 1.0769 27 6 9.4775 3.7940 1.7181 28 6 5.3182 2.9994 0.0012 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.0942 4.5069 -0.9400 35 1 1.9464 3.6456 0.1173 36 1 2.7911 5.7974 1.1214 37 1 3.1746 4.3666 2.1094 38 1 5.1399 5.8784 1.8868 39 1 5.0663 5.6983 0.1177 40 1 7.8156 2.1770 3.3486 41 1 6.5687 1.9993 2.0866 42 1 8.1316 0.8884 0.5929 43 1 8.2877 0.0968 2.1813 44 1 9.6632 -2.2982 1.2384 45 1 10.1090 2.6454 0.0023 46 1 11.3522 2.8217 1.2681 47 1 9.6352 4.7185 1.1626 48 1 9.7901 3.9314 2.7532 49 1 5.6217 3.4615 -0.9383 50 1 5.8266 2.0424 0.1187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491680468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:56 Heat of formation + Delta-G solvation = -108.398691 kcal Electronic energy + Delta-G solvation = -31459.257730 eV Core-core repulsion = 27293.480519 eV Total energy + Delta-G solvation = -4165.777211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00865 -41.19756 -39.17099 -38.33631 -37.42940 -35.64391 -34.31645 -33.35991 -32.54283 -32.31146 -31.63183 -28.78041 -26.81220 -26.06095 -25.04583 -24.31144 -23.96437 -22.84259 -22.01491 -21.08099 -20.01765 -19.29973 -18.63561 -18.10908 -17.80856 -17.74535 -17.01450 -16.64133 -16.51540 -15.82479 -15.72820 -15.58681 -15.40874 -15.17819 -15.09039 -14.95204 -14.68971 -14.37720 -14.23416 -13.98360 -13.70079 -13.46760 -13.33766 -13.21736 -12.90497 -12.73693 -12.60677 -12.53693 -12.47954 -12.22805 -12.14985 -12.08257 -12.01851 -11.91703 -11.70907 -11.64755 -11.55863 -11.53064 -10.81053 -10.62115 -9.94801 -9.82995 -8.63180 -7.91028 -5.46219 0.91574 1.45443 1.47754 1.51507 1.58722 1.68063 1.98506 2.48823 2.79052 3.23970 3.38210 3.55042 3.60583 3.68274 3.98413 4.02395 4.03885 4.09651 4.13429 4.18855 4.23497 4.33315 4.35104 4.39951 4.48305 4.52354 4.60336 4.64928 4.69588 4.72451 4.77215 4.79324 4.89898 4.95626 5.02883 5.04102 5.11796 5.14354 5.17361 5.31469 5.37561 5.39415 5.46807 5.55766 5.62746 6.18036 6.35376 6.41989 7.07431 7.08823 7.13039 7.74347 8.31877 9.13818 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010696 B = 0.003622 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.284925 B = 7727.977860 C = 9958.632723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 O -0.361 6.361 4 C 0.644 3.356 5 O -0.608 6.608 6 N -0.587 5.587 7 C 0.105 3.895 8 C -0.124 4.124 9 C -0.097 4.097 10 C -0.113 4.113 11 H 0.104 0.896 12 C 0.519 3.481 13 O -0.574 6.574 14 N -0.600 5.600 15 C 0.098 3.902 16 C 0.173 3.827 17 N -0.606 5.606 18 C -0.270 4.270 19 H 0.069 0.931 20 C -0.042 4.042 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.263 1.263 24 H -0.288 1.288 25 H -0.293 1.293 26 C 0.131 3.869 27 C 0.105 3.895 28 C 0.144 3.856 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.092 0.908 42 H -0.006 1.006 43 H 0.060 0.940 44 H 0.251 0.749 45 H 0.006 0.994 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.005 11.244 0.482 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.003 4.003 3 O -0.275 6.275 4 C 0.399 3.601 5 O -0.499 6.499 6 N -0.327 5.327 7 C -0.015 4.015 8 C -0.162 4.162 9 C -0.135 4.135 10 C -0.135 4.135 11 H 0.122 0.878 12 C 0.307 3.693 13 O -0.454 6.454 14 N -0.332 5.332 15 C -0.026 4.026 16 C 0.047 3.953 17 N -0.330 5.330 18 C -0.400 4.400 19 H 0.087 0.913 20 C -0.239 4.239 21 N -0.576 5.576 22 Si 0.797 3.203 23 H -0.187 1.187 24 H -0.215 1.215 25 H -0.220 1.220 26 C 0.005 3.995 27 C -0.018 4.018 28 C 0.022 3.978 29 H 0.091 0.909 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.012 0.988 43 H 0.079 0.921 44 H 0.060 0.940 45 H 0.024 0.976 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.097 0.903 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -20.677 11.252 0.157 23.541 hybrid contribution 1.067 -1.454 0.166 1.811 sum -19.610 9.798 0.323 21.924 Atomic orbital electron populations 1.21820 0.89501 1.04486 1.03992 1.23247 0.96944 0.77819 1.02323 1.86215 1.20300 1.34304 1.86702 1.18216 0.81760 0.83994 0.76103 1.91059 1.60785 1.40843 1.57224 1.46909 1.06755 1.03696 1.75373 1.22099 0.94255 0.84842 1.00327 1.21933 0.94853 1.00991 0.98376 1.21392 0.94474 0.93758 1.03835 1.21685 0.90828 1.00013 1.00942 0.87843 1.20786 0.88576 0.82524 0.77388 1.90624 1.81631 1.28308 1.44850 1.48162 1.08122 1.20069 1.56803 1.22500 0.99142 0.82966 0.97960 1.20877 0.83296 0.95053 0.96104 1.44187 1.03005 1.19076 1.66730 1.19493 1.05963 0.87386 1.27178 0.91307 1.26004 1.00079 0.98923 0.98851 1.70195 1.40784 1.11239 1.35432 0.85195 0.78032 0.78621 0.78476 1.18681 1.21492 1.22016 1.21385 0.97938 0.86038 0.94135 1.22054 0.79857 0.98292 1.01647 1.21298 0.78799 0.99750 0.97994 0.90892 0.88180 0.90836 0.91955 0.91875 0.89526 0.87386 0.86855 0.91085 0.90651 0.90853 0.90690 0.89017 0.98759 0.92147 0.93976 0.97643 0.90709 0.89134 0.90693 0.90318 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 10.29 71.98 0.74 -0.79 16 2 C 0.07 1.37 6.19 71.98 0.45 1.81 16 3 O -0.36 -8.25 8.86 -55.48 -0.49 -8.74 16 4 C 0.64 18.74 8.43 129.79 1.09 19.83 16 5 O -0.61 -23.37 15.55 19.80 0.31 -23.06 16 6 N -0.59 -14.19 2.97 -949.33 -2.82 -17.01 16 7 C 0.11 1.59 6.45 86.36 0.56 2.15 16 8 C -0.12 -1.58 6.08 30.67 0.19 -1.40 16 9 C -0.10 -1.84 4.69 30.62 0.14 -1.70 16 10 C -0.11 -2.86 1.80 -11.48 -0.02 -2.88 16 11 H 0.10 2.51 6.62 -2.38 -0.02 2.50 16 12 C 0.52 17.05 6.79 87.66 0.60 17.65 16 13 O -0.57 -21.36 15.55 -3.03 -0.05 -21.41 16 14 N -0.60 -21.39 2.94 -817.16 -2.40 -23.79 16 15 C 0.10 3.63 6.25 86.57 0.54 4.17 16 16 C 0.17 8.43 5.49 86.57 0.48 8.90 16 17 N -0.61 -30.73 2.93 -697.35 -2.04 -32.77 16 18 C -0.27 -14.76 9.51 84.03 0.80 -13.96 16 19 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 20 C -0.04 -2.34 4.89 84.86 0.42 -1.93 16 21 N -0.93 -55.98 11.55 21.65 0.25 -55.73 16 22 Si 0.97 44.58 29.58 68.60 2.03 46.61 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 C 0.13 5.66 6.67 86.41 0.58 6.23 16 27 C 0.11 3.81 6.60 86.41 0.57 4.38 16 28 C 0.14 4.05 5.52 86.35 0.48 4.53 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 1.36 6.93 -2.39 -0.02 1.34 16 36 H 0.11 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.51 7.91 -2.38 -0.02 1.49 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.09 3.04 4.83 -2.38 -0.01 3.03 16 42 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 43 H 0.06 3.28 6.40 -2.39 -0.02 3.27 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 46 H 0.07 3.05 7.93 -2.39 -0.02 3.03 16 47 H 0.09 3.14 6.99 -2.39 -0.02 3.13 16 48 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 49 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.07 2.63 6.12 -2.38 -0.01 2.62 16 Total: -1.00 -74.22 390.83 3.30 -70.92 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.93 Total: 17.98 kcal Atomic # 6 Polarization: 39.41 SS G_CDS: 7.60 Total: 47.01 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -7.02 Total: -129.31 kcal Atomic # 8 Polarization: -52.98 SS G_CDS: -0.23 Total: -53.21 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -74.22 3.30 -70.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491680468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.478 kcal (2) G-P(sol) polarization free energy of solvation -74.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds