Wall clock time and date at job start Sat Apr 11 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.47734 * 2 1 4 4 C 1.34625 * 117.00376 * 179.97438 * 3 2 1 5 5 O 1.21516 * 120.00316 * 0.02562 * 4 3 2 6 6 N 1.34787 * 120.00020 * 179.97438 * 4 3 2 7 7 C 1.47424 * 125.64671 * 359.97438 * 6 4 3 8 8 C 1.54903 * 104.83064 * 155.91481 * 7 6 4 9 9 C 1.55153 * 101.58136 * 37.01218 * 8 7 6 10 10 H 1.08997 * 110.72331 * 83.03903 * 9 8 7 11 11 N 1.46506 * 110.72050 * 206.13164 * 9 8 7 12 12 C 1.34769 * 120.00147 * 204.99715 * 11 9 8 13 13 O 1.21588 * 120.00071 * 355.01223 * 12 11 9 14 14 N 1.34775 * 119.99956 * 175.00994 * 12 11 9 15 15 C 1.46930 * 120.63127 * 4.94287 * 14 12 11 16 16 C 1.53624 * 108.54438 * 126.36855 * 15 14 12 17 17 C 1.53040 * 109.23838 * 54.85733 * 16 15 14 18 18 C 1.50699 * 109.45779 * 178.49047 * 17 16 15 19 19 H 1.08008 * 120.00185 * 120.06769 * 18 17 16 20 20 C 1.37882 * 120.00203 * 300.07027 * 18 17 16 21 21 N 1.31512 * 119.99878 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47311 * 60.00310 * 22 20 18 24 24 H 1.48506 * 109.46685 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47564 * 299.99365 * 22 20 18 26 26 C 1.53038 * 109.54028 * 298.50862 * 17 16 15 27 27 C 1.46926 * 120.63197 * 185.22462 * 14 12 11 28 28 C 1.47018 * 125.64772 * 180.02562 * 6 4 3 29 29 H 1.08993 * 109.47015 * 300.00102 * 1 2 3 30 30 H 1.08996 * 109.47322 * 60.00103 * 1 2 3 31 31 H 1.09006 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47204 * 239.99882 * 2 1 3 33 33 H 1.09004 * 109.47143 * 120.00181 * 2 1 3 34 34 H 1.09000 * 110.36561 * 37.07634 * 7 6 4 35 35 H 1.09001 * 110.46200 * 274.80716 * 7 6 4 36 36 H 1.09000 * 111.00657 * 278.93230 * 8 7 6 37 37 H 1.09005 * 111.03359 * 155.09716 * 8 7 6 38 38 H 0.97006 * 119.99543 * 24.99693 * 11 9 8 39 39 H 1.09000 * 109.58818 * 246.20101 * 15 14 12 40 40 H 1.09001 * 109.58579 * 6.62443 * 15 14 12 41 41 H 1.09000 * 109.63656 * 294.86930 * 16 15 14 42 42 H 1.08999 * 109.43259 * 174.72123 * 16 15 14 43 43 H 1.08997 * 109.46436 * 58.53368 * 17 16 15 44 44 H 0.96993 * 120.00177 * 180.02562 * 21 20 18 45 45 H 1.09007 * 109.50059 * 301.41805 * 26 17 16 46 46 H 1.09003 * 109.49876 * 181.32078 * 26 17 16 47 47 H 1.08999 * 109.58834 * 353.37051 * 27 14 12 48 48 H 1.09001 * 109.58994 * 113.79871 * 27 14 12 49 49 H 1.08996 * 109.88283 * 61.60247 * 28 6 4 50 50 H 1.08999 * 109.88574 * 300.43123 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5452 0.0005 5 8 4.0890 0.5816 0.0005 6 7 3.8640 2.7908 0.0000 7 6 3.0854 4.0426 -0.0016 8 6 4.0363 5.1018 0.6095 9 6 5.4057 4.6649 0.0254 10 1 5.5399 5.0614 -0.9810 11 7 6.5017 5.0917 0.8989 12 6 7.7354 5.2790 0.3897 13 8 7.9605 5.0072 -0.7738 14 7 8.7195 5.7676 1.1702 15 6 8.4932 5.9991 2.6034 16 6 9.5872 5.2670 3.3953 17 6 10.9607 5.7202 2.8950 18 6 12.0379 5.0327 3.6938 19 1 12.7583 4.4000 3.1966 20 6 12.1037 5.2113 5.0594 21 7 11.2268 5.9820 5.6648 22 14 13.4385 4.3585 6.0496 23 1 14.7716 4.7987 5.5656 24 1 13.2921 4.7114 7.4847 25 1 13.3132 2.8879 5.8859 26 6 11.1123 5.3568 1.4161 27 6 10.0372 6.0846 0.6029 28 6 5.2955 3.1258 0.0000 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1922 3.9346 0.6137 35 1 2.8124 4.3202 -1.0197 36 1 4.0390 5.0428 1.6979 37 1 3.7711 6.1049 0.2754 38 1 6.3394 5.2395 1.8438 39 1 8.5399 7.0678 2.8127 40 1 7.5143 5.6117 2.8859 41 1 9.4849 4.1912 3.2527 42 1 9.4891 5.5051 4.4544 43 1 11.0530 6.7996 3.0150 44 1 11.2732 6.1079 6.6254 45 1 10.9955 4.2801 1.2922 46 1 12.0996 5.6588 1.0666 47 1 10.0776 5.7537 -0.4349 48 1 10.2073 7.1602 0.6524 49 1 5.7676 2.7353 -0.9015 50 1 5.7748 2.7052 0.8840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495462911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:02 Heat of formation + Delta-G solvation = -103.345228 kcal Electronic energy + Delta-G solvation = -30046.692766 eV Core-core repulsion = 25881.134690 eV Total energy + Delta-G solvation = -4165.558076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85275 -40.08194 -38.58193 -36.90129 -36.44582 -34.36374 -33.49883 -32.14080 -31.36107 -30.54364 -29.98998 -28.64785 -26.14173 -24.59520 -23.19869 -22.94110 -22.41051 -21.51375 -20.75366 -20.14380 -19.05806 -18.44032 -17.57042 -17.30820 -17.01206 -16.39978 -16.25856 -15.51424 -15.09209 -14.73130 -14.58398 -14.34560 -14.16272 -13.79904 -13.55873 -13.40551 -13.16181 -13.07116 -12.92161 -12.77205 -12.61361 -12.39797 -12.26151 -12.15008 -11.90825 -11.85669 -11.59245 -11.34850 -11.13518 -10.93465 -10.80044 -10.76589 -10.67487 -10.40314 -10.17963 -9.81744 -9.57864 -9.18885 -9.16220 -9.01099 -8.95195 -8.38940 -7.95257 -6.04628 -4.10357 1.75626 2.61111 2.89711 3.29496 3.33908 3.37459 3.43042 3.62033 4.04552 4.22222 4.36656 4.40300 4.59482 4.63437 4.70103 4.88585 4.94743 5.01679 5.15473 5.24624 5.26310 5.40777 5.44229 5.49086 5.55750 5.56521 5.65500 5.72606 5.78781 5.88886 5.93264 6.04360 6.10347 6.16240 6.22954 6.44597 6.53994 6.66371 6.81874 6.97912 7.12250 7.16253 7.19246 7.39466 7.65426 7.90793 8.01564 8.04942 8.22552 8.39240 8.85410 8.92836 9.54734 11.00832 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002247 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.558357 B =12460.824870 C =13394.412737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.664 3.336 5 O -0.568 6.568 6 N -0.602 5.602 7 C 0.107 3.893 8 C -0.141 4.141 9 C 0.159 3.841 10 H 0.110 0.890 11 N -0.741 5.741 12 C 0.706 3.294 13 O -0.601 6.601 14 N -0.616 5.616 15 C 0.110 3.890 16 C -0.124 4.124 17 C 0.050 3.950 18 C -0.511 4.511 19 H 0.054 0.946 20 C 0.061 3.939 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.125 4.125 27 C 0.129 3.871 28 C 0.112 3.888 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.400 0.600 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.104 0.896 43 H 0.027 0.973 44 H 0.261 0.739 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.299 -2.147 -9.217 24.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.419 3.581 5 O -0.457 6.457 6 N -0.344 5.344 7 C -0.016 4.016 8 C -0.180 4.180 9 C 0.051 3.949 10 H 0.128 0.872 11 N -0.400 5.400 12 C 0.408 3.592 13 O -0.480 6.480 14 N -0.352 5.352 15 C -0.013 4.013 16 C -0.162 4.162 17 C 0.031 3.969 18 C -0.550 4.550 19 H 0.073 0.927 20 C -0.140 4.140 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.163 4.163 27 C 0.007 3.993 28 C -0.011 4.011 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.237 0.763 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.122 0.878 43 H 0.045 0.955 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.076 0.924 49 H 0.098 0.902 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.005 -2.689 -9.873 24.268 hybrid contribution 0.661 -0.591 1.243 1.527 sum -21.344 -3.280 -8.629 23.255 Atomic orbital electron populations 1.21823 0.92486 1.03100 1.03502 1.22966 0.94775 0.78684 1.02914 1.86217 1.21889 1.33226 1.87102 1.17471 0.81134 0.82831 0.76676 1.91033 1.59919 1.38920 1.55792 1.46982 1.08148 1.02991 1.76294 1.22316 0.95079 0.82492 1.01694 1.23135 0.93640 0.99437 1.01789 1.21661 0.85388 0.91780 0.96065 0.87244 1.45221 1.07969 1.74519 1.12262 1.15848 0.80394 0.78215 0.84733 1.90870 1.81959 1.58714 1.16495 1.47432 1.11966 1.66531 1.09288 1.22004 0.99209 1.00671 0.79401 1.22099 0.94602 0.97542 1.01968 1.18615 0.92588 0.96742 0.88948 1.21185 1.12828 1.28794 0.92149 0.92736 1.24957 0.95969 0.95185 0.97877 1.69816 1.35478 1.38162 1.09733 0.86674 0.82428 0.80052 0.78943 1.20301 1.21336 1.20341 1.22028 0.96316 0.99507 0.98438 1.21595 0.80820 0.98915 0.98007 1.22498 0.78497 0.96251 1.03838 0.91464 0.91477 0.89957 0.91138 0.91112 0.89669 0.90607 0.89653 0.88543 0.76255 0.91866 0.92561 0.94218 0.87840 0.95452 0.92953 0.92917 0.92117 0.90197 0.92376 0.90166 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.08 0.68 6.19 37.16 0.23 0.91 16 3 O -0.37 -4.02 9.75 -40.28 -0.39 -4.41 16 4 C 0.66 8.90 8.62 54.06 0.47 9.36 16 5 O -0.57 -9.60 16.46 -19.29 -0.32 -9.92 16 6 N -0.60 -6.84 3.33 -176.31 -0.59 -7.43 16 7 C 0.11 0.80 6.92 -2.53 -0.02 0.78 16 8 C -0.14 -0.97 6.71 -24.59 -0.17 -1.14 16 9 C 0.16 1.67 3.28 -66.09 -0.22 1.46 16 10 H 0.11 1.24 7.62 -51.93 -0.40 0.85 16 11 N -0.74 -9.38 5.01 -56.88 -0.29 -9.66 16 12 C 0.71 11.95 8.29 -86.93 -0.72 11.23 16 13 O -0.60 -11.93 15.45 5.29 0.08 -11.85 16 14 N -0.62 -10.73 2.97 -178.23 -0.53 -11.26 16 15 C 0.11 1.85 6.42 -3.48 -0.02 1.83 16 16 C -0.12 -2.65 5.17 -26.39 -0.14 -2.79 16 17 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 18 C -0.51 -13.54 8.56 -34.44 -0.29 -13.83 16 19 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 20 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 21 N -0.89 -24.16 11.31 55.43 0.63 -23.53 16 22 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 C -0.12 -2.53 5.30 -26.61 -0.14 -2.68 16 27 C 0.13 2.33 6.44 -3.71 -0.02 2.30 16 28 C 0.11 1.39 6.62 -3.07 -0.02 1.37 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.56 8.01 -51.93 -0.42 0.14 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.40 4.41 6.05 -40.82 -0.25 4.16 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.78 5.64 -51.93 -0.29 0.49 16 41 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.08 1.08 8.03 -51.93 -0.42 0.67 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -32.61 397.76 -9.71 -42.32 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.32 Total: 3.01 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: -0.96 Total: 10.89 kcal Atomic # 7 Polarization: -51.10 SS G_CDS: -0.77 Total: -51.88 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.63 Total: -26.17 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.61 -9.71 -42.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495462911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.024 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds