Wall clock time and date at job start Sat Apr 11 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.47734 * 2 1 4 4 C 1.34625 * 117.00376 * 179.97438 * 3 2 1 5 5 O 1.21516 * 120.00316 * 0.02562 * 4 3 2 6 6 N 1.34787 * 120.00020 * 179.97438 * 4 3 2 7 7 C 1.47424 * 125.64671 * 359.97438 * 6 4 3 8 8 C 1.54903 * 104.83064 * 155.91481 * 7 6 4 9 9 C 1.55153 * 101.58136 * 37.01218 * 8 7 6 10 10 H 1.08997 * 110.72331 * 83.03903 * 9 8 7 11 11 N 1.46506 * 110.72050 * 206.13164 * 9 8 7 12 12 C 1.34769 * 120.00147 * 204.99715 * 11 9 8 13 13 O 1.21588 * 120.00071 * 355.01223 * 12 11 9 14 14 N 1.34775 * 119.99956 * 175.00994 * 12 11 9 15 15 C 1.46930 * 120.63127 * 4.94287 * 14 12 11 16 16 C 1.53624 * 108.54438 * 126.36855 * 15 14 12 17 17 C 1.53040 * 109.23838 * 54.85733 * 16 15 14 18 18 C 1.50699 * 109.45779 * 178.49047 * 17 16 15 19 19 H 1.08008 * 120.00185 * 120.06769 * 18 17 16 20 20 C 1.37882 * 120.00203 * 300.07027 * 18 17 16 21 21 N 1.31512 * 119.99878 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47311 * 60.00310 * 22 20 18 24 24 H 1.48506 * 109.46685 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47564 * 299.99365 * 22 20 18 26 26 C 1.53038 * 109.54028 * 298.50862 * 17 16 15 27 27 C 1.46926 * 120.63197 * 185.22462 * 14 12 11 28 28 C 1.47018 * 125.64772 * 180.02562 * 6 4 3 29 29 H 1.08993 * 109.47015 * 300.00102 * 1 2 3 30 30 H 1.08996 * 109.47322 * 60.00103 * 1 2 3 31 31 H 1.09006 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47204 * 239.99882 * 2 1 3 33 33 H 1.09004 * 109.47143 * 120.00181 * 2 1 3 34 34 H 1.09000 * 110.36561 * 37.07634 * 7 6 4 35 35 H 1.09001 * 110.46200 * 274.80716 * 7 6 4 36 36 H 1.09000 * 111.00657 * 278.93230 * 8 7 6 37 37 H 1.09005 * 111.03359 * 155.09716 * 8 7 6 38 38 H 0.97006 * 119.99543 * 24.99693 * 11 9 8 39 39 H 1.09000 * 109.58818 * 246.20101 * 15 14 12 40 40 H 1.09001 * 109.58579 * 6.62443 * 15 14 12 41 41 H 1.09000 * 109.63656 * 294.86930 * 16 15 14 42 42 H 1.08999 * 109.43259 * 174.72123 * 16 15 14 43 43 H 1.08997 * 109.46436 * 58.53368 * 17 16 15 44 44 H 0.96993 * 120.00177 * 180.02562 * 21 20 18 45 45 H 1.09007 * 109.50059 * 301.41805 * 26 17 16 46 46 H 1.09003 * 109.49876 * 181.32078 * 26 17 16 47 47 H 1.08999 * 109.58834 * 353.37051 * 27 14 12 48 48 H 1.09001 * 109.58994 * 113.79871 * 27 14 12 49 49 H 1.08996 * 109.88283 * 61.60247 * 28 6 4 50 50 H 1.08999 * 109.88574 * 300.43123 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5452 0.0005 5 8 4.0890 0.5816 0.0005 6 7 3.8640 2.7908 0.0000 7 6 3.0854 4.0426 -0.0016 8 6 4.0363 5.1018 0.6095 9 6 5.4057 4.6649 0.0254 10 1 5.5399 5.0614 -0.9810 11 7 6.5017 5.0917 0.8989 12 6 7.7354 5.2790 0.3897 13 8 7.9605 5.0072 -0.7738 14 7 8.7195 5.7676 1.1702 15 6 8.4932 5.9991 2.6034 16 6 9.5872 5.2670 3.3953 17 6 10.9607 5.7202 2.8950 18 6 12.0379 5.0327 3.6938 19 1 12.7583 4.4000 3.1966 20 6 12.1037 5.2113 5.0594 21 7 11.2268 5.9820 5.6648 22 14 13.4385 4.3585 6.0496 23 1 14.7716 4.7987 5.5656 24 1 13.2921 4.7114 7.4847 25 1 13.3132 2.8879 5.8859 26 6 11.1123 5.3568 1.4161 27 6 10.0372 6.0846 0.6029 28 6 5.2955 3.1258 0.0000 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1922 3.9346 0.6137 35 1 2.8124 4.3202 -1.0197 36 1 4.0390 5.0428 1.6979 37 1 3.7711 6.1049 0.2754 38 1 6.3394 5.2395 1.8438 39 1 8.5399 7.0678 2.8127 40 1 7.5143 5.6117 2.8859 41 1 9.4849 4.1912 3.2527 42 1 9.4891 5.5051 4.4544 43 1 11.0530 6.7996 3.0150 44 1 11.2732 6.1079 6.6254 45 1 10.9955 4.2801 1.2922 46 1 12.0996 5.6588 1.0666 47 1 10.0776 5.7537 -0.4349 48 1 10.2073 7.1602 0.6524 49 1 5.7676 2.7353 -0.9015 50 1 5.7748 2.7052 0.8840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495462911.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:01 Heat of formation + Delta-G solvation = -123.947500 kcal Electronic energy + Delta-G solvation = -30047.586148 eV Core-core repulsion = 25881.134690 eV Total energy + Delta-G solvation = -4166.451458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84512 -41.32820 -39.57137 -38.35463 -37.48883 -35.55861 -35.23570 -33.18101 -32.58443 -31.73748 -31.29948 -29.62154 -27.89200 -25.56534 -24.60461 -23.93527 -23.72005 -22.44252 -21.90777 -21.36281 -20.47708 -19.47520 -18.89878 -18.25770 -18.21740 -17.94768 -17.43994 -16.65780 -16.49543 -16.32121 -15.55162 -15.27558 -15.25335 -15.10100 -14.88294 -14.59570 -14.46730 -14.25302 -14.13411 -13.94669 -13.59065 -13.53104 -13.22460 -13.12286 -12.95836 -12.87293 -12.81717 -12.72530 -12.51517 -12.46866 -12.13014 -11.98280 -11.90381 -11.80531 -11.57128 -11.46929 -11.23916 -10.98513 -10.77543 -10.39313 -10.31384 -9.94112 -9.40628 -8.07532 -6.19854 0.86490 1.41997 1.42847 1.49834 1.58457 1.70759 2.11012 2.44140 2.80777 2.95386 3.18843 3.43071 3.53459 3.98990 4.01465 4.06329 4.08667 4.15822 4.24964 4.27092 4.33416 4.37251 4.49087 4.54195 4.60627 4.65963 4.70952 4.71683 4.73704 4.90519 4.92826 4.94896 5.00925 5.03873 5.10717 5.14136 5.22429 5.24700 5.34793 5.44802 5.49176 5.53265 5.66432 6.00372 6.05349 6.15028 6.24545 6.41282 6.88842 6.95699 7.06533 7.47244 7.54351 8.95400 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002247 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.558357 B =12460.824870 C =13394.412737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 O -0.363 6.363 4 C 0.658 3.342 5 O -0.614 6.614 6 N -0.600 5.600 7 C 0.104 3.896 8 C -0.124 4.124 9 C 0.160 3.840 10 H 0.106 0.894 11 N -0.726 5.726 12 C 0.705 3.295 13 O -0.632 6.632 14 N -0.621 5.621 15 C 0.122 3.878 16 C -0.115 4.115 17 C 0.046 3.954 18 C -0.536 4.536 19 H 0.044 0.956 20 C 0.019 3.981 21 N -0.909 5.909 22 Si 0.946 3.054 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.278 1.278 26 C -0.115 4.115 27 C 0.136 3.864 28 C 0.115 3.885 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.410 0.590 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.021 0.979 42 H 0.080 0.920 43 H 0.008 0.992 44 H 0.262 0.738 45 H 0.035 0.965 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.721 -1.098 -9.104 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.003 4.003 3 O -0.276 6.276 4 C 0.413 3.587 5 O -0.506 6.506 6 N -0.341 5.341 7 C -0.018 4.018 8 C -0.162 4.162 9 C 0.053 3.947 10 H 0.124 0.876 11 N -0.384 5.384 12 C 0.406 3.594 13 O -0.514 6.514 14 N -0.357 5.357 15 C -0.001 4.001 16 C -0.154 4.154 17 C 0.028 3.972 18 C -0.574 4.574 19 H 0.062 0.938 20 C -0.180 4.180 21 N -0.549 5.549 22 Si 0.772 3.228 23 H -0.200 1.200 24 H -0.207 1.207 25 H -0.204 1.204 26 C -0.154 4.154 27 C 0.013 3.987 28 C -0.009 4.009 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.250 0.750 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.040 0.960 42 H 0.098 0.902 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.082 0.918 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.487 -1.613 -9.744 26.404 hybrid contribution 1.404 -0.972 1.191 2.082 sum -23.083 -2.585 -8.553 24.752 Atomic orbital electron populations 1.21831 0.89571 1.04591 1.03946 1.23274 0.96917 0.77631 1.02438 1.86240 1.20141 1.34599 1.86644 1.17736 0.81677 0.82940 0.76298 1.90995 1.61079 1.40633 1.57926 1.47070 1.08150 1.03710 1.75206 1.22634 0.95284 0.80533 1.03310 1.23155 0.90229 1.00555 1.02261 1.21767 0.86632 0.90242 0.96070 0.87648 1.45115 1.06993 1.73243 1.13009 1.15990 0.81265 0.77851 0.84277 1.90853 1.82658 1.59921 1.17939 1.47412 1.11984 1.66822 1.09439 1.21868 0.99085 1.00709 0.78405 1.21865 0.95367 0.96880 1.01315 1.18592 0.93019 0.95109 0.90490 1.21534 1.13752 1.29133 0.92987 0.93760 1.25595 0.97826 0.95861 0.98751 1.69915 1.36339 1.38724 1.09873 0.85809 0.80229 0.78924 0.77831 1.19983 1.20690 1.20400 1.21878 0.97706 0.98705 0.97064 1.21465 0.80502 0.99387 0.97370 1.22347 0.79228 0.97634 1.01725 0.91006 0.90948 0.87931 0.91657 0.91741 0.87915 0.88897 0.88593 0.85565 0.75033 0.90898 0.89055 0.95969 0.90153 0.97405 0.92902 0.94570 0.91799 0.90198 0.90833 0.92598 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 10.29 71.98 0.74 -0.46 16 2 C 0.07 1.17 6.19 71.98 0.45 1.61 16 3 O -0.36 -7.53 9.75 -55.35 -0.54 -8.07 16 4 C 0.66 17.59 8.62 129.79 1.12 18.71 16 5 O -0.61 -21.53 16.46 19.79 0.33 -21.21 16 6 N -0.60 -13.06 3.33 -942.12 -3.13 -16.19 16 7 C 0.10 1.22 6.92 86.85 0.60 1.82 16 8 C -0.12 -1.23 6.71 31.98 0.21 -1.02 16 9 C 0.16 3.07 3.28 46.18 0.15 3.22 16 10 H 0.11 2.20 7.62 -2.39 -0.02 2.19 16 11 N -0.73 -16.86 5.01 -452.15 -2.27 -19.13 16 12 C 0.70 22.93 8.29 179.06 1.48 24.42 16 13 O -0.63 -24.75 15.45 -3.99 -0.06 -24.81 16 14 N -0.62 -20.86 2.97 -836.06 -2.48 -23.34 16 15 C 0.12 3.91 6.42 86.51 0.56 4.46 16 16 C -0.12 -4.98 5.17 30.82 0.16 -4.82 16 17 C 0.05 2.21 2.06 -11.51 -0.02 2.18 16 18 C -0.54 -28.95 8.56 25.60 0.22 -28.73 16 19 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 20 C 0.02 1.01 5.30 84.66 0.45 1.46 16 21 N -0.91 -49.52 11.31 21.45 0.24 -49.28 16 22 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 C -0.12 -4.74 5.30 30.67 0.16 -4.58 16 27 C 0.14 4.80 6.44 86.36 0.56 5.36 16 28 C 0.11 2.83 6.62 86.73 0.57 3.40 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.10 0.93 8.04 -2.39 -0.02 0.91 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.83 8.01 -2.39 -0.02 0.81 16 37 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.41 7.81 6.05 -92.70 -0.56 7.25 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.09 2.28 5.64 -2.39 -0.01 2.26 16 41 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 3.87 6.03 -2.39 -0.01 3.86 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 45 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.08 2.85 7.00 -2.39 -0.02 2.84 16 48 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 49 H 0.06 1.63 8.14 -2.39 -0.02 1.62 16 50 H 0.06 1.66 8.03 -2.39 -0.02 1.64 16 Total: -1.00 -73.21 397.76 1.90 -71.32 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.37 Total: 18.66 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 7.41 Total: 27.03 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -7.64 Total: -107.94 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.28 Total: -54.09 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -73.21 1.90 -71.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495462911.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.630 kcal (2) G-P(sol) polarization free energy of solvation -73.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds