Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46516 * 2 1 4 4 C 1.34638 * 116.99878 * 179.97438 * 3 2 1 5 5 O 1.21508 * 119.99978 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99966 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.63167 * 180.02562 * 6 4 3 8 8 C 1.53198 * 108.77607 * 233.58950 * 7 6 4 9 9 C 1.53034 * 109.31082 * 305.36267 * 8 7 6 10 10 N 1.46497 * 109.46171 * 181.38653 * 9 8 7 11 11 C 1.34776 * 120.00194 * 154.97393 * 10 9 8 12 12 O 1.21582 * 120.00274 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00034 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00258 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47269 * 184.79147 * 14 13 11 16 16 C 1.50694 * 115.55114 * 294.81128 * 15 14 13 17 17 H 1.08008 * 119.99906 * 95.20873 * 16 15 14 18 18 C 1.37875 * 120.00314 * 274.92789 * 16 15 14 19 19 N 1.31509 * 119.99913 * 355.42420 * 18 16 15 20 20 Si 1.86807 * 120.00040 * 175.41703 * 18 16 15 21 21 H 1.48494 * 109.47052 * 60.00642 * 20 18 16 22 22 H 1.48500 * 109.47055 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47106 * 300.00083 * 20 18 16 24 24 C 1.53003 * 117.49834 * 80.48431 * 15 14 13 25 25 C 1.53006 * 117.49908 * 149.14426 * 15 14 13 26 26 C 1.53041 * 109.52940 * 61.37259 * 9 8 7 27 27 C 1.46924 * 120.63526 * 359.97438 * 6 4 3 28 28 H 1.08995 * 109.47299 * 60.00404 * 1 2 3 29 29 H 1.09007 * 109.46343 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47193 * 299.99266 * 1 2 3 31 31 H 1.08999 * 109.47193 * 240.00733 * 2 1 3 32 32 H 1.08995 * 109.47299 * 119.99596 * 2 1 3 33 33 H 1.08998 * 109.59297 * 113.79941 * 7 6 4 34 34 H 1.09004 * 109.70423 * 353.43916 * 7 6 4 35 35 H 1.08996 * 109.49753 * 185.40742 * 8 7 6 36 36 H 1.09001 * 109.52070 * 65.32654 * 8 7 6 37 37 H 1.08998 * 109.46394 * 301.35871 * 9 8 7 38 38 H 0.97004 * 119.99607 * 334.97065 * 10 9 8 39 39 H 0.96999 * 119.99637 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.47395 * 64.78624 * 14 13 11 41 41 H 1.09007 * 109.47080 * 304.78945 * 14 13 11 42 42 H 0.97001 * 119.99960 * 184.99387 * 19 18 16 43 43 H 1.09003 * 117.50034 * 214.99852 * 24 15 14 44 44 H 1.09002 * 117.49971 * 0.02686 * 24 15 14 45 45 H 1.08996 * 117.49810 * 359.97342 * 25 15 14 46 46 H 1.08995 * 117.50078 * 144.97442 * 25 15 14 47 47 H 1.08995 * 109.49768 * 58.57731 * 26 9 8 48 48 H 1.09001 * 109.50316 * 178.67886 * 26 9 8 49 49 H 1.09003 * 109.59018 * 246.20191 * 27 6 4 50 50 H 1.09004 * 109.58260 * 6.48191 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3486 1.5456 0.0005 5 8 4.0889 0.5820 0.0005 6 7 3.8636 2.7910 0.0000 7 6 5.3180 2.9997 0.0001 8 6 5.6838 3.9224 1.1670 9 6 4.8640 5.2110 1.0694 10 7 5.2351 6.1097 2.1651 11 6 5.0605 7.4397 2.0344 12 8 4.5955 7.8937 1.0068 13 7 5.4025 8.2667 3.0423 14 6 5.2122 9.7122 2.9004 15 6 5.7858 10.4249 4.1267 16 6 5.0893 10.1358 5.4314 17 1 5.4689 9.3662 6.0872 18 6 3.9708 10.8576 5.7905 19 7 3.5643 11.8576 5.0393 20 14 3.0327 10.4150 7.3442 21 1 3.9329 10.5404 8.5185 22 1 1.8783 11.3352 7.5044 23 1 2.5410 9.0174 7.2442 24 6 7.2982 10.6524 4.1684 25 6 6.3530 11.8316 3.9252 26 6 3.3734 4.8776 1.1661 27 6 2.9815 3.9659 -0.0016 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 5.6210 3.4614 -0.9397 34 1 5.8266 2.0428 0.1177 35 1 6.7460 4.1627 1.1217 36 1 5.4638 3.4218 2.1099 37 1 5.0658 5.6985 0.1157 38 1 5.6064 5.7476 2.9848 39 1 5.7738 7.9045 3.8619 40 1 4.1479 9.9322 2.8170 41 1 5.7264 10.0602 2.0044 42 1 2.8219 12.4108 5.3285 43 1 7.7895 10.5929 5.1397 44 1 7.8846 10.2946 3.3220 45 1 6.3179 12.2491 2.9190 46 1 6.2220 12.5480 4.7362 47 1 3.1751 4.3676 2.1088 48 1 2.7910 5.7978 1.1202 49 1 3.0943 4.5063 -0.9416 50 1 1.9460 3.6455 0.1136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495901901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -92.180897 kcal Electronic energy + Delta-G solvation = -29711.768758 eV Core-core repulsion = 25546.694803 eV Total energy + Delta-G solvation = -4165.073955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93973 -39.71168 -38.32476 -36.85469 -36.48691 -34.59976 -33.29170 -32.20072 -31.96675 -31.30933 -30.87665 -26.52070 -25.50467 -24.67372 -23.77368 -23.23803 -21.67098 -21.16080 -20.35155 -20.10794 -19.39058 -18.46082 -17.66360 -17.25619 -16.93194 -16.37161 -15.74327 -15.22067 -15.05639 -14.92181 -14.66667 -14.35850 -14.26449 -13.98088 -13.91162 -13.70949 -13.36146 -13.15200 -13.09569 -12.63565 -12.59936 -12.26043 -12.07663 -11.95105 -11.88006 -11.59145 -11.56350 -11.18583 -10.98421 -10.96862 -10.82735 -10.76915 -10.70005 -10.56009 -10.24210 -9.76763 -9.48173 -9.08873 -9.04887 -8.89086 -8.49175 -8.24938 -8.01077 -6.08193 -4.18013 1.83744 2.54761 3.14052 3.25359 3.31609 3.32647 3.53593 3.74227 4.33559 4.44982 4.59136 4.59729 4.65525 4.69286 4.77781 4.92995 4.94855 4.99353 5.10219 5.19627 5.22479 5.33568 5.40477 5.41680 5.46150 5.53421 5.58468 5.61684 5.70587 5.88554 6.02314 6.09053 6.11249 6.22258 6.34379 6.47413 6.58479 6.70386 6.74799 6.84509 7.03235 7.11810 7.30217 7.40840 7.44326 7.60580 7.79985 8.00431 8.33248 8.63115 8.82955 9.16869 9.48942 10.98944 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.002225 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.476827 B =12579.262796 C =13690.606428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.082 3.918 3 O -0.369 6.369 4 C 0.652 3.348 5 O -0.578 6.578 6 N -0.594 5.594 7 C 0.132 3.868 8 C -0.143 4.143 9 C 0.167 3.833 10 N -0.751 5.751 11 C 0.698 3.302 12 O -0.603 6.603 13 N -0.721 5.721 14 C 0.183 3.817 15 C 0.024 3.976 16 C -0.499 4.499 17 H 0.058 0.942 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.211 4.211 25 C -0.142 4.142 26 C -0.147 4.147 27 C 0.115 3.885 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.394 0.606 39 H 0.396 0.604 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.262 0.738 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.076 0.924 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 -20.251 -9.359 22.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.007 3.993 3 O -0.283 6.283 4 C 0.407 3.593 5 O -0.467 6.467 6 N -0.334 5.334 7 C 0.010 3.990 8 C -0.182 4.182 9 C 0.061 3.939 10 N -0.406 5.406 11 C 0.398 3.602 12 O -0.483 6.483 13 N -0.373 5.373 14 C 0.059 3.941 15 C 0.023 3.977 16 C -0.537 4.537 17 H 0.077 0.923 18 C -0.131 4.131 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.248 4.248 25 C -0.180 4.180 26 C -0.187 4.187 27 C -0.008 4.008 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.227 0.773 39 H 0.230 0.770 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.087 0.913 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.420 -20.008 -10.355 22.574 hybrid contribution -0.262 -0.441 1.754 1.828 sum -1.682 -20.449 -8.602 22.248 Atomic orbital electron populations 1.21835 0.92503 1.03071 1.03673 1.22952 0.94861 0.78742 1.02708 1.86246 1.22061 1.33093 1.86916 1.17974 0.81192 0.83979 0.76198 1.90977 1.59852 1.39436 1.56475 1.47000 1.07506 1.03197 1.75732 1.21603 0.77691 1.01113 0.98570 1.22253 1.01045 0.95380 0.99512 1.20636 0.92950 0.88716 0.91601 1.45169 1.70743 1.05160 1.19552 1.16055 0.79134 0.80720 0.84265 1.90864 1.52080 1.75901 1.29450 1.45177 1.67134 1.07883 1.17080 1.20844 1.00774 0.76243 0.96250 1.19056 0.89244 0.95262 0.94166 1.20290 1.10455 1.20415 1.02536 0.92347 1.24985 0.96685 0.94928 0.96492 1.69976 1.27134 1.17098 1.36823 0.86693 0.79573 0.78457 0.83441 1.20327 1.21281 1.20207 1.23012 0.94887 1.06750 1.00151 1.22465 1.03244 0.92337 0.99941 1.22399 0.97560 1.00310 0.98436 1.21778 0.94339 0.85375 0.99270 0.91421 0.90010 0.91362 0.91230 0.91208 0.90478 0.88180 0.89416 0.90767 0.89199 0.77313 0.77006 0.91751 0.94411 0.92811 0.90466 0.91733 0.91795 0.89532 0.91326 0.89363 0.90602 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.08 0.66 6.19 37.16 0.23 0.89 16 3 O -0.37 -3.89 8.86 -40.32 -0.36 -4.24 16 4 C 0.65 7.79 8.43 54.05 0.46 8.25 16 5 O -0.58 -8.28 15.55 -19.28 -0.30 -8.58 16 6 N -0.59 -6.05 2.97 -178.52 -0.53 -6.58 16 7 C 0.13 1.15 6.43 -3.71 -0.02 1.12 16 8 C -0.14 -1.20 5.55 -26.61 -0.15 -1.35 16 9 C 0.17 1.86 2.42 -67.89 -0.16 1.70 16 10 N -0.75 -9.79 5.08 -58.64 -0.30 -10.09 16 11 C 0.70 12.60 8.53 -86.91 -0.74 11.86 16 12 O -0.60 -13.07 16.00 5.29 0.08 -12.99 16 13 N -0.72 -13.59 5.48 -65.23 -0.36 -13.95 16 14 C 0.18 4.08 5.50 -4.05 -0.02 4.06 16 15 C 0.02 0.54 1.47 -155.66 -0.23 0.32 16 16 C -0.50 -12.64 8.59 -34.44 -0.30 -12.93 16 17 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 18 C 0.07 1.92 5.43 -17.82 -0.10 1.83 16 19 N -0.87 -24.03 12.65 55.43 0.70 -23.32 16 20 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 24 C -0.21 -4.34 9.96 -26.69 -0.27 -4.60 16 25 C -0.14 -3.22 9.14 -26.69 -0.24 -3.46 16 26 C -0.15 -1.62 5.65 -26.58 -0.15 -1.77 16 27 C 0.12 1.09 6.45 -3.69 -0.02 1.07 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.92 7.01 -51.93 -0.36 0.56 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.14 7.57 -51.93 -0.39 0.75 16 38 H 0.39 4.22 8.62 -40.82 -0.35 3.86 16 39 H 0.40 6.82 8.34 -40.82 -0.34 6.48 16 40 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 41 H 0.04 0.84 8.09 -51.92 -0.42 0.42 16 42 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 43 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 0.85 6.93 -51.93 -0.36 0.50 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -31.95 410.45 -9.77 -41.72 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.54 Total: 9.98 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -1.34 Total: 6.51 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.49 Total: -53.94 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.57 Total: -25.80 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.95 -9.77 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495901901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.461 kcal (2) G-P(sol) polarization free energy of solvation -31.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds