Wall clock time and date at job start Sat Apr 11 2020 05:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46516 * 2 1 4 4 C 1.34638 * 116.99878 * 179.97438 * 3 2 1 5 5 O 1.21508 * 119.99978 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99966 * 179.97438 * 4 3 2 7 7 C 1.46928 * 120.63167 * 180.02562 * 6 4 3 8 8 C 1.53198 * 108.77607 * 233.58950 * 7 6 4 9 9 C 1.53034 * 109.31082 * 305.36267 * 8 7 6 10 10 N 1.46497 * 109.46171 * 181.38653 * 9 8 7 11 11 C 1.34776 * 120.00194 * 154.97393 * 10 9 8 12 12 O 1.21582 * 120.00274 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00034 * 180.02562 * 11 10 9 14 14 C 1.46495 * 120.00258 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47269 * 184.79147 * 14 13 11 16 16 C 1.50694 * 115.55114 * 294.81128 * 15 14 13 17 17 H 1.08008 * 119.99906 * 95.20873 * 16 15 14 18 18 C 1.37875 * 120.00314 * 274.92789 * 16 15 14 19 19 N 1.31509 * 119.99913 * 355.42420 * 18 16 15 20 20 Si 1.86807 * 120.00040 * 175.41703 * 18 16 15 21 21 H 1.48494 * 109.47052 * 60.00642 * 20 18 16 22 22 H 1.48500 * 109.47055 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47106 * 300.00083 * 20 18 16 24 24 C 1.53003 * 117.49834 * 80.48431 * 15 14 13 25 25 C 1.53006 * 117.49908 * 149.14426 * 15 14 13 26 26 C 1.53041 * 109.52940 * 61.37259 * 9 8 7 27 27 C 1.46924 * 120.63526 * 359.97438 * 6 4 3 28 28 H 1.08995 * 109.47299 * 60.00404 * 1 2 3 29 29 H 1.09007 * 109.46343 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47193 * 299.99266 * 1 2 3 31 31 H 1.08999 * 109.47193 * 240.00733 * 2 1 3 32 32 H 1.08995 * 109.47299 * 119.99596 * 2 1 3 33 33 H 1.08998 * 109.59297 * 113.79941 * 7 6 4 34 34 H 1.09004 * 109.70423 * 353.43916 * 7 6 4 35 35 H 1.08996 * 109.49753 * 185.40742 * 8 7 6 36 36 H 1.09001 * 109.52070 * 65.32654 * 8 7 6 37 37 H 1.08998 * 109.46394 * 301.35871 * 9 8 7 38 38 H 0.97004 * 119.99607 * 334.97065 * 10 9 8 39 39 H 0.96999 * 119.99637 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.47395 * 64.78624 * 14 13 11 41 41 H 1.09007 * 109.47080 * 304.78945 * 14 13 11 42 42 H 0.97001 * 119.99960 * 184.99387 * 19 18 16 43 43 H 1.09003 * 117.50034 * 214.99852 * 24 15 14 44 44 H 1.09002 * 117.49971 * 0.02686 * 24 15 14 45 45 H 1.08996 * 117.49810 * 359.97342 * 25 15 14 46 46 H 1.08995 * 117.50078 * 144.97442 * 25 15 14 47 47 H 1.08995 * 109.49768 * 58.57731 * 26 9 8 48 48 H 1.09001 * 109.50316 * 178.67886 * 26 9 8 49 49 H 1.09003 * 109.59018 * 246.20191 * 27 6 4 50 50 H 1.09004 * 109.58260 * 6.48191 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3486 1.5456 0.0005 5 8 4.0889 0.5820 0.0005 6 7 3.8636 2.7910 0.0000 7 6 5.3180 2.9997 0.0001 8 6 5.6838 3.9224 1.1670 9 6 4.8640 5.2110 1.0694 10 7 5.2351 6.1097 2.1651 11 6 5.0605 7.4397 2.0344 12 8 4.5955 7.8937 1.0068 13 7 5.4025 8.2667 3.0423 14 6 5.2122 9.7122 2.9004 15 6 5.7858 10.4249 4.1267 16 6 5.0893 10.1358 5.4314 17 1 5.4689 9.3662 6.0872 18 6 3.9708 10.8576 5.7905 19 7 3.5643 11.8576 5.0393 20 14 3.0327 10.4150 7.3442 21 1 3.9329 10.5404 8.5185 22 1 1.8783 11.3352 7.5044 23 1 2.5410 9.0174 7.2442 24 6 7.2982 10.6524 4.1684 25 6 6.3530 11.8316 3.9252 26 6 3.3734 4.8776 1.1661 27 6 2.9815 3.9659 -0.0016 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 5.6210 3.4614 -0.9397 34 1 5.8266 2.0428 0.1177 35 1 6.7460 4.1627 1.1217 36 1 5.4638 3.4218 2.1099 37 1 5.0658 5.6985 0.1157 38 1 5.6064 5.7476 2.9848 39 1 5.7738 7.9045 3.8619 40 1 4.1479 9.9322 2.8170 41 1 5.7264 10.0602 2.0044 42 1 2.8219 12.4108 5.3285 43 1 7.7895 10.5929 5.1397 44 1 7.8846 10.2946 3.3220 45 1 6.3179 12.2491 2.9190 46 1 6.2220 12.5480 4.7362 47 1 3.1751 4.3676 2.1088 48 1 2.7910 5.7978 1.1202 49 1 3.0943 4.5063 -0.9416 50 1 1.9460 3.6455 0.1136 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495901901.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:06 Heat of formation + Delta-G solvation = -112.808178 kcal Electronic energy + Delta-G solvation = -29712.663224 eV Core-core repulsion = 25546.694803 eV Total energy + Delta-G solvation = -4165.968421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81416 -41.01132 -39.35264 -38.44235 -37.49836 -35.70628 -34.90319 -33.93492 -32.88851 -32.09159 -31.83038 -28.14735 -27.17074 -25.85560 -24.57923 -23.92569 -22.93579 -22.51627 -21.65798 -21.20393 -21.04649 -19.38310 -19.01471 -18.22031 -17.95926 -17.71356 -17.16990 -16.66584 -16.30801 -15.95512 -15.80257 -15.69164 -15.50852 -15.12910 -15.03395 -14.81058 -14.45909 -14.40064 -14.03460 -13.70504 -13.62010 -13.44583 -13.31615 -13.01689 -12.91655 -12.87423 -12.79064 -12.52321 -12.38466 -12.33777 -12.09455 -11.99708 -11.65797 -11.63361 -11.53154 -11.42599 -11.20082 -10.91628 -10.41954 -10.22769 -10.00675 -9.91363 -9.56447 -8.07118 -6.21042 1.07655 1.44063 1.45774 1.51739 1.63395 1.86604 2.29561 2.43593 2.78157 3.20805 3.34291 3.62599 3.68133 3.79750 3.98449 4.02752 4.07574 4.10563 4.26723 4.27975 4.30900 4.37100 4.51086 4.59134 4.66356 4.69002 4.71434 4.77753 4.77919 4.82248 4.92920 4.93979 5.01623 5.04695 5.06431 5.13728 5.22543 5.32035 5.38157 5.42229 5.58727 5.62649 5.66517 5.76528 5.81310 6.17497 6.20966 6.39314 6.86223 7.13616 7.28336 7.48352 7.73772 8.99656 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015260 B = 0.002225 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.476827 B =12579.262796 C =13690.606428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.074 3.926 3 O -0.373 6.373 4 C 0.648 3.352 5 O -0.606 6.606 6 N -0.591 5.591 7 C 0.130 3.870 8 C -0.128 4.128 9 C 0.165 3.835 10 N -0.730 5.730 11 C 0.698 3.302 12 O -0.642 6.642 13 N -0.717 5.717 14 C 0.201 3.799 15 C 0.002 3.998 16 C -0.502 4.502 17 H 0.064 0.936 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.949 3.051 21 H -0.270 1.270 22 H -0.293 1.293 23 H -0.272 1.272 24 C -0.176 4.176 25 C -0.154 4.154 26 C -0.141 4.141 27 C 0.122 3.878 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.409 0.591 39 H 0.406 0.594 40 H 0.022 0.978 41 H 0.035 0.965 42 H 0.258 0.742 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.194 -22.206 -8.960 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 O -0.287 6.287 4 C 0.403 3.597 5 O -0.497 6.497 6 N -0.331 5.331 7 C 0.009 3.991 8 C -0.167 4.167 9 C 0.059 3.941 10 N -0.386 5.386 11 C 0.397 3.603 12 O -0.524 6.524 13 N -0.371 5.371 14 C 0.076 3.924 15 C 0.001 3.999 16 C -0.540 4.540 17 H 0.082 0.918 18 C -0.177 4.177 19 N -0.545 5.545 20 Si 0.775 3.225 21 H -0.195 1.195 22 H -0.219 1.219 23 H -0.197 1.197 24 C -0.213 4.213 25 C -0.192 4.192 26 C -0.180 4.180 27 C -0.001 4.001 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.245 0.755 39 H 0.241 0.759 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.067 0.933 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.636 -22.016 -9.926 24.158 hybrid contribution -0.498 0.125 1.593 1.674 sum -1.134 -21.891 -8.333 23.451 Atomic orbital electron populations 1.21846 0.90445 1.04479 1.03605 1.23213 0.96429 0.77702 1.02632 1.86262 1.21283 1.34567 1.86629 1.18160 0.81470 0.84097 0.75979 1.90952 1.60540 1.40351 1.57907 1.47115 1.08195 1.02790 1.75007 1.21733 0.76853 1.01141 0.99406 1.22153 1.01487 0.93435 0.99634 1.20799 0.93604 0.89354 0.90296 1.45021 1.69474 1.03438 1.20681 1.16183 0.78687 0.82011 0.83379 1.90840 1.53677 1.76976 1.30905 1.44944 1.67556 1.06710 1.17850 1.20367 0.97934 0.78282 0.95838 1.19093 0.91303 0.95777 0.93714 1.20617 1.10276 1.19881 1.03189 0.91830 1.25699 0.97739 0.95033 0.99253 1.70105 1.27713 1.18273 1.38421 0.85760 0.78199 0.78018 0.80488 1.19515 1.21873 1.19743 1.22987 0.93272 1.03685 1.01366 1.22388 1.05101 0.92271 0.99482 1.22288 0.97073 0.99460 0.99222 1.21729 0.94523 0.84868 0.98942 0.91285 0.87856 0.91555 0.91200 0.91456 0.89000 0.88332 0.87580 0.90325 0.90467 0.75526 0.75853 0.95970 0.94653 0.93259 0.89741 0.89388 0.91269 0.91749 0.91180 0.91817 0.89755 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.29 71.98 0.74 -0.64 16 2 C 0.07 1.12 6.19 71.98 0.45 1.57 16 3 O -0.37 -7.52 8.86 -55.47 -0.49 -8.01 16 4 C 0.65 14.84 8.43 129.79 1.09 15.93 16 5 O -0.61 -16.89 15.55 19.82 0.31 -16.58 16 6 N -0.59 -11.17 2.97 -949.14 -2.82 -13.99 16 7 C 0.13 1.99 6.43 86.36 0.56 2.55 16 8 C -0.13 -1.83 5.55 30.67 0.17 -1.66 16 9 C 0.16 3.42 2.42 45.02 0.11 3.52 16 10 N -0.73 -17.84 5.08 -457.70 -2.33 -20.17 16 11 C 0.70 24.68 8.53 179.05 1.53 26.21 16 12 O -0.64 -27.96 16.00 -3.97 -0.06 -28.02 16 13 N -0.72 -26.50 5.48 -478.55 -2.62 -29.13 16 14 C 0.20 9.05 5.50 86.38 0.48 9.52 16 15 C 0.00 0.09 1.47 -52.93 -0.08 0.01 16 16 C -0.50 -25.13 8.59 25.60 0.22 -24.91 16 17 H 0.06 3.05 7.82 -2.91 -0.02 3.03 16 18 C 0.02 1.23 5.43 84.65 0.46 1.69 16 19 N -0.91 -50.89 12.65 21.45 0.27 -50.62 16 20 Si 0.95 41.76 29.54 68.60 2.03 43.78 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 C -0.18 -6.89 9.96 30.62 0.30 -6.59 16 25 C -0.15 -6.99 9.14 30.62 0.28 -6.71 16 26 C -0.14 -2.96 5.65 30.69 0.17 -2.78 16 27 C 0.12 2.16 6.45 86.38 0.56 2.72 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.10 1.63 7.01 -2.39 -0.02 1.61 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.87 7.57 -2.39 -0.02 1.85 16 38 H 0.41 7.71 8.62 -92.71 -0.80 6.91 16 39 H 0.41 13.29 8.34 -92.71 -0.77 12.52 16 40 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.04 1.59 8.09 -2.38 -0.02 1.57 16 42 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 43 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 44 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 45 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 46 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 49 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.10 1.69 6.93 -2.38 -0.02 1.67 16 Total: -1.00 -69.43 410.45 0.69 -68.74 By element: Atomic # 1 Polarization: 34.20 SS G_CDS: -0.63 Total: 33.57 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 7.03 Total: 20.43 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -7.50 Total: -113.90 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.25 Total: -52.62 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -69.43 0.69 -68.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495901901.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.068 kcal (2) G-P(sol) polarization free energy of solvation -69.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds