Wall clock time and date at job start Sat Apr 11 2020 05:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46642 * 2 1 4 4 C 1.34779 * 119.99643 * 179.97438 * 3 2 1 5 5 O 1.21588 * 120.00160 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99983 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99860 * 174.91911 * 6 4 3 8 8 C 1.50706 * 110.01973 * 63.88978 * 7 6 4 9 9 O 1.21281 * 119.99779 * 220.15621 * 8 7 6 10 10 N 1.34770 * 119.99949 * 40.14711 * 8 7 6 11 11 C 1.47026 * 125.65126 * 355.35831 * 10 8 7 12 12 C 1.54322 * 107.27510 * 181.02134 * 11 10 8 13 13 C 1.55157 * 102.94171 * 22.19083 * 12 11 10 14 14 O 1.42904 * 111.00469 * 82.57280 * 13 12 11 15 15 C 1.50693 * 111.00556 * 206.38695 * 13 12 11 16 16 H 1.07999 * 120.00333 * 118.54741 * 15 13 12 17 17 C 1.37885 * 119.99802 * 298.54932 * 15 13 12 18 18 N 1.31510 * 119.99934 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99858 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47110 * 89.99691 * 19 17 15 21 21 H 1.48500 * 109.46999 * 209.99759 * 19 17 15 22 22 H 1.48499 * 109.47177 * 329.99744 * 19 17 15 23 23 C 1.47427 * 125.64987 * 175.04578 * 10 8 7 24 24 C 1.53879 * 110.03538 * 302.44717 * 7 6 4 25 25 C 1.54266 * 106.59913 * 240.71616 * 24 7 6 26 26 C 1.54893 * 104.19367 * 23.60846 * 25 24 7 27 27 C 1.54259 * 110.03335 * 185.27917 * 7 6 4 28 28 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47643 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.47342 * 60.00235 * 1 2 3 31 31 H 1.08996 * 109.47184 * 239.99760 * 2 1 3 32 32 H 1.09003 * 109.46640 * 119.99583 * 2 1 3 33 33 H 0.97000 * 120.00576 * 359.97438 * 3 2 1 34 34 H 0.96997 * 119.99688 * 354.91312 * 6 4 3 35 35 H 1.09010 * 109.87962 * 300.44095 * 11 10 8 36 36 H 1.08998 * 109.88240 * 61.44014 * 11 10 8 37 37 H 1.09000 * 110.71647 * 140.55484 * 12 11 10 38 38 H 1.08994 * 110.71675 * 263.82926 * 12 11 10 39 39 H 0.96702 * 113.99790 * 61.44949 * 14 13 12 40 40 H 0.97006 * 119.99831 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.36523 * 274.75227 * 23 10 8 42 42 H 1.09001 * 110.36494 * 37.07631 * 23 10 8 43 43 H 1.09002 * 110.02682 * 359.97438 * 24 7 6 44 44 H 1.08994 * 110.03375 * 121.42927 * 24 7 6 45 45 H 1.08991 * 110.48776 * 264.93047 * 25 24 7 46 46 H 1.09007 * 110.48366 * 142.28357 * 25 24 7 47 47 H 1.09001 * 110.75130 * 203.74248 * 26 25 24 48 48 H 1.08997 * 110.75661 * 80.37189 * 26 25 24 49 49 H 1.09003 * 110.49087 * 214.35528 * 27 7 6 50 50 H 1.09001 * 110.48845 * 336.99959 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1335 0.7034 0.0015 6 7 3.7926 2.8983 0.0010 7 6 5.2281 3.1676 0.1140 8 6 5.9530 2.6130 -1.0853 9 8 7.0262 2.0657 -0.9455 10 7 5.4085 2.7251 -2.3130 11 6 4.0784 3.2747 -2.6136 12 6 3.8769 3.1778 -4.1406 13 6 4.8723 2.0610 -4.5522 14 8 4.3054 0.7663 -4.3413 15 6 5.3104 2.2289 -5.9843 16 1 6.3526 2.3940 -6.2144 17 6 4.3806 2.1717 -7.0008 18 7 3.1116 1.9702 -6.7207 19 14 4.9238 2.3791 -8.7761 20 1 5.2638 1.0514 -9.3480 21 1 3.8221 2.9895 -9.5627 22 1 6.1173 3.2611 -8.8287 23 6 6.0506 2.3228 -3.5777 24 6 5.7827 2.5381 1.4039 25 6 6.3460 3.6966 2.2528 26 6 5.5806 4.9448 1.7474 27 6 5.4737 4.6865 0.2239 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3879 2.1185 -0.0004 34 1 3.1653 3.6344 -0.0734 35 1 3.3123 2.6929 -2.1009 36 1 4.0272 4.3161 -2.2959 37 1 2.8530 2.8881 -4.3768 38 1 4.1335 4.1204 -4.6240 39 1 3.5068 0.5974 -4.8598 40 1 2.4575 1.9297 -7.4359 41 1 6.6852 3.1256 -3.9530 42 1 6.6333 1.4128 -3.4346 43 1 4.9836 2.0326 1.9461 44 1 6.5767 1.8314 1.1631 45 1 7.4163 3.8100 2.0811 46 1 6.1440 3.5276 3.3106 47 1 6.1492 5.8532 1.9464 48 1 4.5906 5.0004 2.2001 49 1 6.4033 4.9599 -0.2754 50 1 4.6354 5.2402 -0.1989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:20 Heat of formation + Delta-G solvation = -108.270296 kcal Electronic energy + Delta-G solvation = -32647.857335 eV Core-core repulsion = 28482.085691 eV Total energy + Delta-G solvation = -4165.771643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.90731 -38.96500 -37.87466 -36.58507 -35.09823 -34.37179 -33.42894 -32.19138 -30.56320 -29.66707 -28.81424 -28.25468 -27.68039 -25.08594 -23.07623 -22.66835 -21.24756 -20.93006 -20.63666 -19.58297 -18.67328 -18.25637 -17.23926 -16.90384 -15.97416 -15.62997 -15.38814 -15.09438 -14.99826 -14.87927 -14.49018 -14.23545 -14.03025 -13.70833 -13.60100 -13.27982 -12.90901 -12.59583 -12.33952 -12.16309 -11.96495 -11.84216 -11.68898 -11.53422 -11.44123 -11.34524 -11.29789 -11.25582 -11.18797 -11.01011 -10.87026 -10.60586 -10.52974 -10.45372 -10.01204 -9.91116 -9.75630 -9.33028 -8.98444 -8.68507 -8.47727 -8.16622 -7.84677 -6.26753 -4.34420 2.64424 3.20679 3.21573 3.27857 3.31448 3.38719 3.69163 4.27754 4.28000 4.47881 4.49831 4.79521 4.96132 5.00241 5.07432 5.13895 5.29156 5.37788 5.39856 5.46207 5.58165 5.60345 5.63194 5.75353 5.75912 5.81954 5.87911 5.92579 5.93587 5.98255 6.02680 6.05825 6.27606 6.33728 6.44037 6.51785 6.58280 6.61755 6.73808 6.90999 6.93865 7.08271 7.31933 7.36593 7.74907 8.06289 8.09570 8.27684 8.67598 8.76170 8.81227 9.33802 9.44823 10.80462 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.004290 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.712056 B = 6525.424124 C = 8073.215355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 N -0.747 5.747 4 C 0.703 3.297 5 O -0.566 6.566 6 N -0.737 5.737 7 C 0.183 3.817 8 C 0.532 3.468 9 O -0.546 6.546 10 N -0.597 5.597 11 C 0.105 3.895 12 C -0.137 4.137 13 C 0.250 3.750 14 O -0.578 6.578 15 C -0.534 4.534 16 H 0.064 0.936 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.902 3.098 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.119 3.881 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.119 4.119 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.393 0.607 34 H 0.395 0.605 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.377 0.623 40 H 0.267 0.733 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.093 0.907 45 H 0.069 0.931 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.598 6.850 15.864 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.010 3.990 3 N -0.403 5.403 4 C 0.403 3.597 5 O -0.441 6.441 6 N -0.395 5.395 7 C 0.093 3.907 8 C 0.319 3.681 9 O -0.424 6.424 10 N -0.328 5.328 11 C -0.018 4.018 12 C -0.176 4.176 13 C 0.210 3.790 14 O -0.386 6.386 15 C -0.572 4.572 16 H 0.082 0.918 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.729 3.271 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.003 4.003 24 C -0.152 4.152 25 C -0.162 4.162 26 C -0.158 4.158 27 C -0.157 4.157 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.226 0.774 34 H 0.230 0.770 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.227 0.773 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.087 0.913 49 H 0.104 0.896 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.912 5.567 16.347 17.954 hybrid contribution -1.128 0.902 -1.615 2.167 sum -6.041 6.469 14.732 17.186 Atomic orbital electron populations 1.21995 0.94657 1.03092 1.02312 1.21123 0.93560 0.81854 1.02482 1.45121 1.05201 1.08981 1.81031 1.15867 0.82686 0.83343 0.77794 1.91019 1.54446 1.42888 1.55793 1.45395 1.07108 1.06493 1.80508 1.20933 0.79344 0.95950 0.94459 1.20096 0.85650 0.79247 0.83151 1.90624 1.23195 1.43695 1.84842 1.48382 1.17690 1.60797 1.05962 1.22255 0.84519 0.95888 0.99148 1.23185 1.02880 1.01430 0.90070 1.19605 0.87432 0.80627 0.91379 1.86203 1.47151 1.35131 1.70078 1.21473 0.94834 1.50252 0.90682 0.91811 1.24973 0.94734 0.93626 0.99579 1.69727 1.01030 1.49524 1.33207 0.86438 0.78356 0.78526 0.83779 1.20413 1.21105 1.19725 1.22399 0.96524 0.99294 0.82066 1.22395 1.01798 0.98282 0.92753 1.22400 1.00193 0.94374 0.99184 1.22502 1.00665 0.98340 0.94259 1.22592 1.03279 0.91880 0.97956 0.90852 0.92333 0.91812 0.91258 0.91961 0.77414 0.77040 0.92462 0.93675 0.89837 0.91605 0.77347 0.92354 0.91266 0.91293 0.91066 0.88868 0.91191 0.91512 0.91041 0.91263 0.89601 0.90268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 10.03 37.16 0.37 -0.94 16 2 C 0.13 1.58 6.39 -4.04 -0.03 1.56 16 3 N -0.75 -9.01 5.56 -65.22 -0.36 -9.37 16 4 C 0.70 11.18 6.12 -86.91 -0.53 10.65 16 5 O -0.57 -12.03 14.52 5.29 0.08 -11.95 16 6 N -0.74 -9.69 2.84 -52.45 -0.15 -9.84 16 7 C 0.18 2.75 0.60 -131.85 -0.08 2.67 16 8 C 0.53 10.89 5.46 -10.99 -0.06 10.83 16 9 O -0.55 -13.10 15.64 5.56 0.09 -13.01 16 10 N -0.60 -12.48 3.32 -170.37 -0.57 -13.05 16 11 C 0.11 1.93 5.52 -3.06 -0.02 1.91 16 12 C -0.14 -2.96 5.38 -24.90 -0.13 -3.10 16 13 C 0.25 6.22 0.87 -89.51 -0.08 6.14 16 14 O -0.58 -15.50 13.17 -35.23 -0.46 -15.96 16 15 C -0.53 -14.16 8.27 -34.44 -0.28 -14.44 16 16 H 0.06 1.69 7.79 -52.49 -0.41 1.28 16 17 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 18 N -0.90 -23.07 10.76 55.43 0.60 -22.48 16 19 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C 0.12 2.82 6.12 -2.41 -0.01 2.81 16 24 C -0.11 -1.69 5.15 -25.61 -0.13 -1.82 16 25 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 26 C -0.12 -1.09 6.91 -24.74 -0.17 -1.26 16 27 C -0.12 -1.34 6.01 -25.08 -0.15 -1.49 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.39 3.41 8.49 -40.82 -0.35 3.07 16 34 H 0.39 3.80 8.12 -40.82 -0.33 3.47 16 35 H 0.06 1.03 5.44 -51.92 -0.28 0.74 16 36 H 0.04 0.68 8.03 -51.93 -0.42 0.26 16 37 H 0.08 1.89 7.55 -51.93 -0.39 1.50 16 38 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 39 H 0.38 9.98 7.56 45.56 0.34 10.33 16 40 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 41 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 42 H 0.07 1.80 7.99 -51.93 -0.42 1.38 16 43 H 0.07 1.07 7.08 -51.93 -0.37 0.71 16 44 H 0.09 1.72 6.58 -51.93 -0.34 1.37 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.09 1.06 7.85 -51.93 -0.41 0.65 16 50 H 0.08 0.73 7.59 -51.93 -0.39 0.34 16 LS Contribution 389.35 15.07 5.87 5.87 Total: -1.00 -33.84 389.35 -9.04 -42.89 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: -7.53 Total: 17.83 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -1.57 Total: 13.77 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.48 Total: -54.74 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.30 Total: -40.92 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.84 -9.04 -42.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.384 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds