Wall clock time and date at job start Sat Apr 11 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46642 * 2 1 4 4 C 1.34779 * 119.99643 * 179.97438 * 3 2 1 5 5 O 1.21588 * 120.00160 * 359.97438 * 4 3 2 6 6 N 1.34781 * 119.99983 * 180.02562 * 4 3 2 7 7 C 1.46494 * 119.99860 * 174.91911 * 6 4 3 8 8 C 1.50706 * 110.01973 * 63.88978 * 7 6 4 9 9 O 1.21281 * 119.99779 * 220.15621 * 8 7 6 10 10 N 1.34770 * 119.99949 * 40.14711 * 8 7 6 11 11 C 1.47026 * 125.65126 * 355.35831 * 10 8 7 12 12 C 1.54322 * 107.27510 * 181.02134 * 11 10 8 13 13 C 1.55157 * 102.94171 * 22.19083 * 12 11 10 14 14 O 1.42904 * 111.00469 * 82.57280 * 13 12 11 15 15 C 1.50693 * 111.00556 * 206.38695 * 13 12 11 16 16 H 1.07999 * 120.00333 * 118.54741 * 15 13 12 17 17 C 1.37885 * 119.99802 * 298.54932 * 15 13 12 18 18 N 1.31510 * 119.99934 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99858 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47110 * 89.99691 * 19 17 15 21 21 H 1.48500 * 109.46999 * 209.99759 * 19 17 15 22 22 H 1.48499 * 109.47177 * 329.99744 * 19 17 15 23 23 C 1.47427 * 125.64987 * 175.04578 * 10 8 7 24 24 C 1.53879 * 110.03538 * 302.44717 * 7 6 4 25 25 C 1.54266 * 106.59913 * 240.71616 * 24 7 6 26 26 C 1.54893 * 104.19367 * 23.60846 * 25 24 7 27 27 C 1.54259 * 110.03335 * 185.27917 * 7 6 4 28 28 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47643 * 299.99969 * 1 2 3 30 30 H 1.09000 * 109.47342 * 60.00235 * 1 2 3 31 31 H 1.08996 * 109.47184 * 239.99760 * 2 1 3 32 32 H 1.09003 * 109.46640 * 119.99583 * 2 1 3 33 33 H 0.97000 * 120.00576 * 359.97438 * 3 2 1 34 34 H 0.96997 * 119.99688 * 354.91312 * 6 4 3 35 35 H 1.09010 * 109.87962 * 300.44095 * 11 10 8 36 36 H 1.08998 * 109.88240 * 61.44014 * 11 10 8 37 37 H 1.09000 * 110.71647 * 140.55484 * 12 11 10 38 38 H 1.08994 * 110.71675 * 263.82926 * 12 11 10 39 39 H 0.96702 * 113.99790 * 61.44949 * 14 13 12 40 40 H 0.97006 * 119.99831 * 180.02562 * 18 17 15 41 41 H 1.08997 * 110.36523 * 274.75227 * 23 10 8 42 42 H 1.09001 * 110.36494 * 37.07631 * 23 10 8 43 43 H 1.09002 * 110.02682 * 359.97438 * 24 7 6 44 44 H 1.08994 * 110.03375 * 121.42927 * 24 7 6 45 45 H 1.08991 * 110.48776 * 264.93047 * 25 24 7 46 46 H 1.09007 * 110.48366 * 142.28357 * 25 24 7 47 47 H 1.09001 * 110.75130 * 203.74248 * 26 25 24 48 48 H 1.08997 * 110.75661 * 80.37189 * 26 25 24 49 49 H 1.09003 * 110.49087 * 214.35528 * 27 7 6 50 50 H 1.09001 * 110.48845 * 336.99959 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1335 0.7034 0.0015 6 7 3.7926 2.8983 0.0010 7 6 5.2281 3.1676 0.1140 8 6 5.9530 2.6130 -1.0853 9 8 7.0262 2.0657 -0.9455 10 7 5.4085 2.7251 -2.3130 11 6 4.0784 3.2747 -2.6136 12 6 3.8769 3.1778 -4.1406 13 6 4.8723 2.0610 -4.5522 14 8 4.3054 0.7663 -4.3413 15 6 5.3104 2.2289 -5.9843 16 1 6.3526 2.3940 -6.2144 17 6 4.3806 2.1717 -7.0008 18 7 3.1116 1.9702 -6.7207 19 14 4.9238 2.3791 -8.7761 20 1 5.2638 1.0514 -9.3480 21 1 3.8221 2.9895 -9.5627 22 1 6.1173 3.2611 -8.8287 23 6 6.0506 2.3228 -3.5777 24 6 5.7827 2.5381 1.4039 25 6 6.3460 3.6966 2.2528 26 6 5.5806 4.9448 1.7474 27 6 5.4737 4.6865 0.2239 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.3879 2.1185 -0.0004 34 1 3.1653 3.6344 -0.0734 35 1 3.3123 2.6929 -2.1009 36 1 4.0272 4.3161 -2.2959 37 1 2.8530 2.8881 -4.3768 38 1 4.1335 4.1204 -4.6240 39 1 3.5068 0.5974 -4.8598 40 1 2.4575 1.9297 -7.4359 41 1 6.6852 3.1256 -3.9530 42 1 6.6333 1.4128 -3.4346 43 1 4.9836 2.0326 1.9461 44 1 6.5767 1.8314 1.1631 45 1 7.4163 3.8100 2.0811 46 1 6.1440 3.5276 3.3106 47 1 6.1492 5.8532 1.9464 48 1 4.5906 5.0004 2.2001 49 1 6.4033 4.9599 -0.2754 50 1 4.6354 5.2402 -0.1989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842442.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:19 Heat of formation + Delta-G solvation = -135.634752 kcal Electronic energy + Delta-G solvation = -32649.043947 eV Core-core repulsion = 28482.085691 eV Total energy + Delta-G solvation = -4166.958255 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23991 -40.43061 -39.40764 -38.08194 -36.24478 -36.15641 -34.69720 -34.24395 -31.80867 -31.12256 -30.09430 -29.74787 -28.85599 -26.96031 -24.28610 -23.98508 -22.42908 -22.16715 -21.77990 -21.41186 -20.07896 -19.43167 -19.10695 -18.48688 -17.18120 -16.97986 -16.88501 -16.80044 -16.33441 -16.26168 -16.02373 -15.54997 -15.30667 -15.18623 -14.90096 -14.79105 -14.22688 -13.96391 -13.93756 -13.58896 -13.31520 -13.25424 -13.12658 -13.02625 -12.69292 -12.65494 -12.62880 -12.47686 -12.39630 -12.34028 -12.25510 -12.02002 -11.99089 -11.87806 -11.47242 -11.32691 -11.27755 -11.20818 -10.67578 -10.24566 -10.17443 -9.74324 -9.55046 -8.25183 -6.40513 1.39363 1.40428 1.43784 1.52333 1.78524 2.02317 2.21717 2.39330 2.99138 3.27763 3.40796 3.46903 3.63523 3.79681 3.99110 4.14098 4.17562 4.25526 4.29311 4.34390 4.38592 4.43902 4.47430 4.54758 4.57934 4.62285 4.72893 4.80291 4.85005 4.94741 5.01228 5.07635 5.10108 5.13113 5.18628 5.24871 5.25729 5.29997 5.42112 5.44413 5.49729 5.50891 5.54581 5.74790 5.97456 6.07657 6.61100 6.66458 7.10346 7.15483 7.29317 7.37712 7.61419 8.80773 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.004290 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.712056 B = 6525.424124 C = 8073.215355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 N -0.728 5.728 4 C 0.696 3.304 5 O -0.627 6.627 6 N -0.718 5.718 7 C 0.189 3.811 8 C 0.520 3.480 9 O -0.595 6.595 10 N -0.601 5.601 11 C 0.112 3.888 12 C -0.123 4.123 13 C 0.236 3.764 14 O -0.595 6.595 15 C -0.565 4.565 16 H 0.051 0.949 17 C 0.040 3.960 18 N -0.904 5.904 19 Si 0.960 3.040 20 H -0.283 1.283 21 H -0.273 1.273 22 H -0.271 1.271 23 C 0.122 3.878 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.106 4.106 27 C -0.116 4.116 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.414 0.586 34 H 0.418 0.582 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.375 0.625 40 H 0.271 0.729 41 H 0.076 0.924 42 H 0.028 0.972 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.087 0.913 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.151 10.118 17.011 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.007 3.993 3 N -0.386 5.386 4 C 0.396 3.604 5 O -0.507 6.507 6 N -0.378 5.378 7 C 0.098 3.902 8 C 0.309 3.691 9 O -0.475 6.475 10 N -0.332 5.332 11 C -0.010 4.010 12 C -0.162 4.162 13 C 0.196 3.804 14 O -0.403 6.403 15 C -0.603 4.603 16 H 0.070 0.930 17 C -0.162 4.162 18 N -0.543 5.543 19 Si 0.785 3.215 20 H -0.209 1.209 21 H -0.198 1.198 22 H -0.196 1.196 23 C -0.002 4.002 24 C -0.151 4.151 25 C -0.157 4.157 26 C -0.143 4.143 27 C -0.154 4.154 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.257 0.743 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.224 0.776 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.047 0.953 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.092 0.908 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.555 8.907 17.507 21.045 hybrid contribution -0.305 -0.249 -2.000 2.038 sum -7.860 8.658 15.507 19.422 Atomic orbital electron populations 1.21921 0.91139 1.04164 1.03498 1.21160 0.96268 0.81391 1.00449 1.44986 1.04215 1.09907 1.79504 1.16201 0.83366 0.83434 0.77411 1.90996 1.56285 1.44964 1.58418 1.45140 1.06780 1.06346 1.79520 1.20939 0.79482 0.98447 0.91286 1.21283 0.85442 0.78277 0.84141 1.90591 1.25641 1.45678 1.85594 1.48496 1.18435 1.60930 1.05318 1.22337 0.83168 0.98588 0.96887 1.22950 1.01094 0.99819 0.92354 1.19807 0.88638 0.80752 0.91166 1.86202 1.47152 1.36872 1.70106 1.21649 0.94625 1.51883 0.92112 0.93034 1.25578 0.94814 0.93040 1.02725 1.69781 1.01429 1.48767 1.34278 0.85538 0.78259 0.78121 0.79551 1.20879 1.19827 1.19597 1.22200 0.96260 0.97847 0.83850 1.22331 1.00256 0.99016 0.93517 1.22402 0.99917 0.93809 0.99618 1.22505 1.01992 0.97801 0.91978 1.22695 1.04067 0.88465 1.00162 0.89927 0.90090 0.91508 0.94844 0.92665 0.74946 0.74313 0.91871 0.88818 0.90775 0.91494 0.77642 0.91921 0.90600 0.95290 0.91557 0.93637 0.92001 0.89478 0.88623 0.88788 0.90756 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.03 71.98 0.72 -1.37 16 2 C 0.13 3.08 6.39 86.38 0.55 3.64 16 3 N -0.73 -16.53 5.56 -478.53 -2.66 -19.19 16 4 C 0.70 21.78 6.12 179.05 1.10 22.88 16 5 O -0.63 -27.79 14.52 -3.99 -0.06 -27.84 16 6 N -0.72 -17.30 2.84 -438.11 -1.24 -18.55 16 7 C 0.19 5.47 0.60 3.58 0.00 5.47 16 8 C 0.52 21.84 5.46 87.66 0.48 22.32 16 9 O -0.59 -30.45 15.64 -3.03 -0.05 -30.50 16 10 N -0.60 -25.46 3.32 -811.32 -2.70 -28.16 16 11 C 0.11 3.92 5.52 86.73 0.48 4.39 16 12 C -0.12 -5.26 5.38 31.78 0.17 -5.09 16 13 C 0.24 12.07 0.87 -10.07 -0.01 12.07 16 14 O -0.60 -33.28 13.17 -148.98 -1.96 -35.24 16 15 C -0.56 -30.63 8.27 25.60 0.21 -30.41 16 16 H 0.05 2.84 7.79 -2.91 -0.02 2.81 16 17 C 0.04 2.08 5.29 84.66 0.45 2.52 16 18 N -0.90 -46.32 10.76 21.45 0.23 -46.09 16 19 Si 0.96 41.56 29.54 68.60 2.03 43.58 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 22 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 23 C 0.12 6.04 6.12 86.93 0.53 6.57 16 24 C -0.11 -3.37 5.15 31.32 0.16 -3.21 16 25 C -0.12 -2.39 6.83 31.67 0.22 -2.17 16 26 C -0.11 -1.43 6.91 31.89 0.22 -1.21 16 27 C -0.12 -2.19 6.01 31.67 0.19 -2.00 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.41 5.85 8.49 -92.71 -0.79 5.06 16 34 H 0.42 6.16 8.12 -92.71 -0.75 5.40 16 35 H 0.06 2.14 5.44 -2.38 -0.01 2.13 16 36 H 0.09 2.41 8.03 -2.39 -0.02 2.39 16 37 H 0.07 3.29 7.55 -2.39 -0.02 3.28 16 38 H 0.07 2.81 8.03 -2.39 -0.02 2.79 16 39 H 0.37 20.55 7.56 -74.06 -0.56 19.99 16 40 H 0.27 13.17 8.31 -92.70 -0.77 12.40 16 41 H 0.08 3.58 8.04 -2.39 -0.02 3.56 16 42 H 0.03 1.62 7.99 -2.39 -0.02 1.60 16 43 H 0.07 2.01 7.08 -2.39 -0.02 1.99 16 44 H 0.04 1.80 6.58 -2.39 -0.02 1.78 16 45 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.07 1.64 7.85 -2.39 -0.02 1.62 16 50 H 0.11 1.40 7.59 -2.39 -0.02 1.38 16 Total: -1.00 -80.94 389.35 -2.07 -83.00 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -1.12 Total: 44.60 kcal Atomic # 6 Polarization: 28.92 SS G_CDS: 5.47 Total: 34.39 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -6.37 Total: -111.99 kcal Atomic # 8 Polarization: -91.52 SS G_CDS: -2.07 Total: -93.58 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -80.94 -2.07 -83.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842442.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.631 kcal (2) G-P(sol) polarization free energy of solvation -80.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds