Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.47293 * 2 1 4 4 C 1.42893 * 114.00011 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47101 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.50687 * 54.99977 * 5 4 3 7 7 C 1.53093 * 109.50755 * 175.08662 * 5 4 3 8 8 N 1.47017 * 109.25513 * 176.73730 * 7 5 4 9 9 C 1.46905 * 110.99755 * 177.64885 * 8 7 5 10 10 C 1.50703 * 109.47192 * 190.03939 * 9 8 7 11 11 O 1.21277 * 119.99622 * 6.26818 * 10 9 8 12 12 N 1.34767 * 120.00047 * 186.25963 * 10 9 8 13 13 C 1.46499 * 119.99923 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47362 * 90.00209 * 13 12 10 15 15 H 1.08004 * 119.99634 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00000 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46890 * 120.00585 * 18 16 14 21 21 H 1.48496 * 109.47337 * 240.00128 * 18 16 14 22 22 C 1.46504 * 120.00007 * 0.02562 * 12 10 9 23 23 C 1.52997 * 109.47091 * 89.99993 * 22 12 10 24 24 C 1.47202 * 109.46981 * 179.97438 * 23 22 12 25 25 N 9.09978 * 167.44712 * 43.00273 * 4 1 2 26 26 C 1.47018 * 110.78816 * 301.44993 * 8 7 5 27 27 C 1.53096 * 109.25744 * 58.59702 * 26 8 7 28 28 O 1.43011 * 109.50427 * 294.91436 * 5 4 3 29 29 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47279 * 300.00407 * 1 2 3 31 31 H 1.09002 * 109.46791 * 59.99940 * 1 2 3 32 32 H 1.09004 * 109.46612 * 119.99547 * 2 1 3 33 33 H 1.08994 * 109.47279 * 239.99593 * 2 1 3 34 34 H 1.08994 * 109.47381 * 299.99871 * 4 3 2 35 35 H 1.08995 * 109.47299 * 60.00344 * 4 3 2 36 36 H 1.08997 * 109.50773 * 296.71933 * 7 5 4 37 37 H 1.09006 * 109.50860 * 56.84901 * 7 5 4 38 38 H 1.08997 * 109.47124 * 310.04751 * 9 8 7 39 39 H 1.09001 * 109.47103 * 70.04518 * 9 8 7 40 40 H 1.09006 * 109.47349 * 210.00363 * 13 12 10 41 41 H 1.09007 * 109.47356 * 330.00114 * 13 12 10 42 42 H 0.97000 * 119.99952 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.46963 * 209.99740 * 22 12 10 44 44 H 1.08994 * 109.46879 * 329.99656 * 22 12 10 45 45 H 1.09003 * 109.47010 * 299.99717 * 23 22 12 46 46 H 1.09005 * 109.47178 * 59.99711 * 23 22 12 47 47 H 1.08996 * 109.50709 * 298.65373 * 26 8 7 48 48 H 1.08997 * 109.50264 * 178.52916 * 26 8 7 49 49 H 1.09003 * 109.50508 * 183.21872 * 27 26 8 50 50 H 1.08994 * 109.54670 * 63.10311 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9384 0.0012 6 1 3.3496 3.4417 0.8427 7 6 5.3464 3.0615 0.1254 8 7 5.7260 4.4797 0.0468 9 6 7.1754 4.6469 0.2179 10 6 7.4968 6.1105 0.3784 11 8 6.5999 6.9220 0.4669 12 7 8.7808 6.5174 0.4237 13 6 9.0931 7.9401 0.5804 14 6 9.1997 8.2727 2.0464 15 1 9.0493 7.5014 2.7873 16 6 9.4891 9.5614 2.4416 17 7 9.6718 10.5006 1.5394 18 14 9.6204 9.9737 4.2588 19 1 9.3733 8.7502 5.0631 20 1 10.9810 10.4918 4.5517 21 1 8.6121 11.0070 4.6061 22 6 9.8641 5.5370 0.3164 23 6 10.2419 5.3535 -1.1548 24 6 11.3309 4.3689 -1.2625 25 7 12.1702 3.6078 -1.3474 26 6 5.2733 5.0715 -1.2206 27 6 3.7530 4.9283 -1.3302 28 8 3.4004 3.5465 -1.2214 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.8333 0.9767 0.8908 35 1 3.8340 0.9764 -0.8891 36 1 5.6679 2.6505 1.0823 37 1 5.8236 2.5121 -0.6862 38 1 7.5016 4.1037 1.1048 39 1 7.6923 4.2554 -0.6584 40 1 10.0404 8.1605 0.0880 41 1 8.3013 8.5379 0.1288 42 1 9.8750 11.4074 1.8175 43 1 10.7317 5.8919 0.8728 44 1 9.5335 4.5837 0.7284 45 1 9.3743 4.9985 -1.7111 46 1 10.5726 6.3070 -1.5667 47 1 5.7487 4.5545 -2.0541 48 1 5.5422 6.1275 -1.2456 49 1 3.4196 5.3143 -2.2935 50 1 3.2750 5.4901 -0.5278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599618166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -87.834281 kcal Electronic energy + Delta-G solvation = -29923.045729 eV Core-core repulsion = 25758.160258 eV Total energy + Delta-G solvation = -4164.885471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12449 -39.06134 -37.96301 -36.91251 -35.63891 -35.05968 -32.91121 -32.76310 -30.98120 -30.86552 -29.57231 -27.60368 -26.38982 -24.51546 -24.04162 -23.06228 -23.03191 -22.06453 -20.46798 -18.57991 -17.67118 -17.15563 -16.88842 -16.65503 -16.46764 -16.26072 -15.79048 -15.52567 -15.36036 -15.16453 -14.74947 -14.44660 -14.30555 -14.10696 -13.75069 -13.57680 -13.48306 -13.42750 -12.91012 -12.81288 -12.52857 -12.45563 -12.29292 -12.06110 -11.92692 -11.77115 -11.73337 -11.58254 -11.30854 -11.26535 -11.12365 -11.02160 -10.86533 -10.67026 -10.54674 -10.20452 -9.88074 -9.75701 -9.68284 -9.01227 -8.49161 -8.35385 -7.86109 -6.10568 -4.14930 2.67386 2.75641 3.14616 3.25683 3.27347 3.35931 3.39529 3.52060 3.63009 3.87254 4.20109 4.40950 4.69674 4.72746 4.76589 4.86194 4.88487 4.93218 4.96854 5.03745 5.06783 5.07008 5.14418 5.18336 5.20734 5.25865 5.28399 5.37245 5.40770 5.45140 5.48989 5.54324 5.60594 5.74464 5.77498 5.82177 5.93887 5.97767 6.02541 6.70998 6.87392 6.92596 6.98058 7.15099 7.32730 7.40975 7.52086 7.85869 8.15309 8.22866 8.82909 8.97651 9.50855 10.97567 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.002582 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.640389 B =10841.713565 C =12371.421172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.073 3.927 5 C 0.097 3.903 6 H 0.077 0.923 7 C 0.028 3.972 8 N -0.515 5.515 9 C 0.034 3.966 10 C 0.508 3.492 11 O -0.513 6.513 12 N -0.599 5.599 13 C 0.246 3.754 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C 0.118 3.882 23 C -0.050 4.050 24 C 0.217 3.783 25 N -0.445 5.445 26 C 0.015 3.985 27 C 0.066 3.934 28 O -0.377 6.377 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.043 0.957 38 H 0.101 0.899 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.104 0.896 46 H 0.118 0.882 47 H 0.036 0.964 48 H 0.106 0.894 49 H 0.098 0.902 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.401 -18.927 -6.090 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.298 6.298 4 C -0.004 4.004 5 C 0.039 3.961 6 H 0.095 0.905 7 C -0.101 4.101 8 N -0.240 5.240 9 C -0.097 4.097 10 C 0.294 3.706 11 O -0.387 6.387 12 N -0.332 5.332 13 C 0.127 3.873 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.009 4.009 23 C -0.092 4.092 24 C -0.102 4.102 25 N -0.122 5.122 26 C -0.113 4.113 27 C -0.010 4.010 28 O -0.295 6.295 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.092 0.908 45 H 0.122 0.878 46 H 0.136 0.864 47 H 0.055 0.945 48 H 0.125 0.875 49 H 0.116 0.884 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.058 -19.086 -5.945 22.378 hybrid contribution 0.755 0.086 0.605 0.971 sum -9.303 -19.000 -5.340 21.819 Atomic orbital electron populations 1.21734 0.93717 1.02093 1.03309 1.22459 0.95728 0.83914 0.99902 1.87959 1.20410 1.26096 1.95372 1.22425 0.82108 0.95095 1.00804 1.22034 0.92686 0.92508 0.88883 0.90482 1.22676 0.95791 0.89479 1.02143 1.61748 1.13164 1.13818 1.35309 1.22149 0.88557 0.96586 1.02400 1.20117 0.83081 0.89560 0.77859 1.90680 1.45221 1.54818 1.47994 1.48236 1.03735 1.10023 1.71174 1.19343 0.97061 0.73634 0.97237 1.21446 1.48244 0.94847 0.92039 0.92323 1.24918 0.95143 0.96127 0.97846 1.69924 1.48203 1.02050 1.33083 0.86462 0.77539 0.78495 0.85046 1.19792 1.21032 1.20874 1.21290 0.93323 0.93606 0.92639 1.19910 0.92324 0.95748 1.01216 1.29114 0.94161 0.93773 0.93106 1.81221 1.11099 1.11201 1.08685 1.22947 0.96566 1.02688 0.89061 1.22658 0.93513 0.82278 1.02585 1.88004 1.79249 1.24347 1.37946 0.91219 0.91806 0.91746 0.93519 0.93478 0.91756 0.92581 0.89402 0.93862 0.88052 0.92490 0.94766 0.93573 0.92730 0.88652 0.90837 0.87823 0.86410 0.94537 0.87543 0.88399 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.45 6.66 37.16 0.25 0.69 16 3 O -0.38 -4.21 10.31 -39.87 -0.41 -4.62 16 4 C 0.07 0.69 5.60 37.16 0.21 0.89 16 5 C 0.10 1.10 3.09 -26.68 -0.08 1.02 16 6 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 7 C 0.03 0.29 4.93 -3.71 -0.02 0.27 16 8 N -0.52 -6.87 4.42 -235.75 -1.04 -7.91 16 9 C 0.03 0.43 3.91 -4.97 -0.02 0.41 16 10 C 0.51 8.99 7.24 -10.99 -0.08 8.91 16 11 O -0.51 -11.44 14.26 5.56 0.08 -11.36 16 12 N -0.60 -10.50 2.46 -175.06 -0.43 -10.93 16 13 C 0.25 5.67 5.16 -5.19 -0.03 5.64 16 14 C -0.53 -13.86 9.39 -34.44 -0.32 -14.18 16 15 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.26 13.29 55.43 0.74 -24.53 16 18 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.12 1.49 5.08 -4.04 -0.02 1.47 16 23 C -0.05 -0.50 5.97 -29.52 -0.18 -0.68 16 24 C 0.22 2.51 15.43 -20.75 -0.32 2.19 16 25 N -0.44 -6.35 18.54 42.16 0.78 -5.57 16 26 C 0.02 0.20 5.30 -3.71 -0.02 0.18 16 27 C 0.07 0.82 7.01 37.21 0.26 1.08 16 28 O -0.38 -4.94 10.44 -39.87 -0.42 -5.36 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 1.14 7.61 -51.93 -0.40 0.74 16 39 H 0.06 0.58 6.83 -51.93 -0.35 0.22 16 40 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 41 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 44 H 0.07 0.76 6.61 -51.93 -0.34 0.42 16 45 H 0.10 0.84 7.12 -51.93 -0.37 0.47 16 46 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.11 1.63 6.10 -51.93 -0.32 1.31 16 49 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 412.98 15.07 6.22 6.22 Total: -1.00 -33.83 412.98 -8.05 -41.88 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -8.46 Total: -2.77 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -0.09 Total: 8.84 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.05 Total: -48.95 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.75 Total: -21.34 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.83 -8.05 -41.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599618166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.952 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds