Wall clock time and date at job start Sat Apr 11 2020 05:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42900 * 109.47293 * 2 1 4 4 C 1.42893 * 114.00011 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47101 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.50687 * 54.99977 * 5 4 3 7 7 C 1.53093 * 109.50755 * 175.08662 * 5 4 3 8 8 N 1.47017 * 109.25513 * 176.73730 * 7 5 4 9 9 C 1.46905 * 110.99755 * 177.64885 * 8 7 5 10 10 C 1.50703 * 109.47192 * 190.03939 * 9 8 7 11 11 O 1.21277 * 119.99622 * 6.26818 * 10 9 8 12 12 N 1.34767 * 120.00047 * 186.25963 * 10 9 8 13 13 C 1.46499 * 119.99923 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.47362 * 90.00209 * 13 12 10 15 15 H 1.08004 * 119.99634 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00000 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00150 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99714 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47197 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46890 * 120.00585 * 18 16 14 21 21 H 1.48496 * 109.47337 * 240.00128 * 18 16 14 22 22 C 1.46504 * 120.00007 * 0.02562 * 12 10 9 23 23 C 1.52997 * 109.47091 * 89.99993 * 22 12 10 24 24 C 1.47202 * 109.46981 * 179.97438 * 23 22 12 25 25 N 9.09978 * 167.44712 * 43.00273 * 4 1 2 26 26 C 1.47018 * 110.78816 * 301.44993 * 8 7 5 27 27 C 1.53096 * 109.25744 * 58.59702 * 26 8 7 28 28 O 1.43011 * 109.50427 * 294.91436 * 5 4 3 29 29 H 1.08995 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47279 * 300.00407 * 1 2 3 31 31 H 1.09002 * 109.46791 * 59.99940 * 1 2 3 32 32 H 1.09004 * 109.46612 * 119.99547 * 2 1 3 33 33 H 1.08994 * 109.47279 * 239.99593 * 2 1 3 34 34 H 1.08994 * 109.47381 * 299.99871 * 4 3 2 35 35 H 1.08995 * 109.47299 * 60.00344 * 4 3 2 36 36 H 1.08997 * 109.50773 * 296.71933 * 7 5 4 37 37 H 1.09006 * 109.50860 * 56.84901 * 7 5 4 38 38 H 1.08997 * 109.47124 * 310.04751 * 9 8 7 39 39 H 1.09001 * 109.47103 * 70.04518 * 9 8 7 40 40 H 1.09006 * 109.47349 * 210.00363 * 13 12 10 41 41 H 1.09007 * 109.47356 * 330.00114 * 13 12 10 42 42 H 0.97000 * 119.99952 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.46963 * 209.99740 * 22 12 10 44 44 H 1.08994 * 109.46879 * 329.99656 * 22 12 10 45 45 H 1.09003 * 109.47010 * 299.99717 * 23 22 12 46 46 H 1.09005 * 109.47178 * 59.99711 * 23 22 12 47 47 H 1.08996 * 109.50709 * 298.65373 * 26 8 7 48 48 H 1.08997 * 109.50264 * 178.52916 * 26 8 7 49 49 H 1.09003 * 109.50508 * 183.21872 * 27 26 8 50 50 H 1.08994 * 109.54670 * 63.10311 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9384 0.0012 6 1 3.3496 3.4417 0.8427 7 6 5.3464 3.0615 0.1254 8 7 5.7260 4.4797 0.0468 9 6 7.1754 4.6469 0.2179 10 6 7.4968 6.1105 0.3784 11 8 6.5999 6.9220 0.4669 12 7 8.7808 6.5174 0.4237 13 6 9.0931 7.9401 0.5804 14 6 9.1997 8.2727 2.0464 15 1 9.0493 7.5014 2.7873 16 6 9.4891 9.5614 2.4416 17 7 9.6718 10.5006 1.5394 18 14 9.6204 9.9737 4.2588 19 1 9.3733 8.7502 5.0631 20 1 10.9810 10.4918 4.5517 21 1 8.6121 11.0070 4.6061 22 6 9.8641 5.5370 0.3164 23 6 10.2419 5.3535 -1.1548 24 6 11.3309 4.3689 -1.2625 25 7 12.1702 3.6078 -1.3474 26 6 5.2733 5.0715 -1.2206 27 6 3.7530 4.9283 -1.3302 28 8 3.4004 3.5465 -1.2214 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.8333 0.9767 0.8908 35 1 3.8340 0.9764 -0.8891 36 1 5.6679 2.6505 1.0823 37 1 5.8236 2.5121 -0.6862 38 1 7.5016 4.1037 1.1048 39 1 7.6923 4.2554 -0.6584 40 1 10.0404 8.1605 0.0880 41 1 8.3013 8.5379 0.1288 42 1 9.8750 11.4074 1.8175 43 1 10.7317 5.8919 0.8728 44 1 9.5335 4.5837 0.7284 45 1 9.3743 4.9985 -1.7111 46 1 10.5726 6.3070 -1.5667 47 1 5.7487 4.5545 -2.0541 48 1 5.5422 6.1275 -1.2456 49 1 3.4196 5.3143 -2.2935 50 1 3.2750 5.4901 -0.5278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599618166.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:26 Heat of formation + Delta-G solvation = -111.692127 kcal Electronic energy + Delta-G solvation = -29924.080283 eV Core-core repulsion = 25758.160258 eV Total energy + Delta-G solvation = -4165.920025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21289 -40.21291 -38.72180 -37.97573 -36.80729 -36.28216 -34.82759 -33.52950 -32.15049 -31.64186 -30.74376 -29.04575 -27.51063 -25.60908 -25.26999 -24.36300 -23.62802 -23.22221 -21.37766 -19.90371 -18.80307 -18.32422 -18.12651 -17.69151 -17.55652 -17.35036 -16.86911 -16.59407 -16.39415 -16.16113 -15.99419 -15.66391 -15.48239 -15.23898 -14.73793 -14.59479 -14.51381 -14.26851 -14.13447 -13.95728 -13.56602 -13.52027 -13.37386 -13.21547 -13.04135 -12.93518 -12.79849 -12.67451 -12.52219 -12.39892 -12.27639 -12.20314 -12.14217 -11.90968 -11.84866 -11.61596 -11.46038 -10.77652 -10.57738 -10.52582 -10.36579 -9.45652 -9.26090 -8.16576 -6.28147 1.39416 1.42537 1.52483 1.69171 1.83960 1.94231 2.17089 2.43250 2.61231 2.73856 2.99788 3.14073 3.18160 3.76321 3.94553 3.96551 4.01290 4.09384 4.12419 4.15381 4.20960 4.21267 4.32432 4.33953 4.45719 4.50866 4.53591 4.54128 4.59171 4.62023 4.66068 4.82845 4.84864 4.88798 4.96725 5.03244 5.06639 5.07671 5.13809 5.29468 5.36590 5.63922 5.83767 5.92563 5.99087 6.15585 6.18390 6.34387 6.60696 6.79347 6.85740 7.37550 7.59471 8.90048 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010945 B = 0.002582 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.640389 B =10841.713565 C =12371.421172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.411 6.411 4 C 0.075 3.925 5 C 0.092 3.908 6 H 0.055 0.945 7 C 0.034 3.966 8 N -0.543 5.543 9 C 0.046 3.954 10 C 0.502 3.498 11 O -0.570 6.570 12 N -0.600 5.600 13 C 0.262 3.738 14 C -0.535 4.535 15 H 0.053 0.947 16 C 0.009 3.991 17 N -0.926 5.926 18 Si 0.956 3.044 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.286 1.286 22 C 0.114 3.886 23 C -0.038 4.038 24 C 0.246 3.754 25 N -0.489 5.489 26 C 0.022 3.978 27 C 0.069 3.931 28 O -0.389 6.389 29 H 0.091 0.909 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.033 0.967 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.134 0.866 46 H 0.119 0.881 47 H 0.054 0.946 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 -21.912 -5.900 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.331 6.331 4 C -0.002 4.002 5 C 0.033 3.967 6 H 0.073 0.927 7 C -0.094 4.094 8 N -0.269 5.269 9 C -0.084 4.084 10 C 0.290 3.710 11 O -0.448 6.448 12 N -0.331 5.331 13 C 0.140 3.860 14 C -0.574 4.574 15 H 0.071 0.929 16 C -0.190 4.190 17 N -0.566 5.566 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.213 1.213 22 C -0.011 4.011 23 C -0.079 4.079 24 C -0.071 4.071 25 N -0.167 5.167 26 C -0.106 4.106 27 C -0.008 4.008 28 O -0.308 6.308 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.143 0.857 39 H 0.113 0.887 40 H 0.051 0.949 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.151 0.849 46 H 0.137 0.863 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.131 0.869 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.536 -22.129 -5.758 24.775 hybrid contribution 0.538 1.013 0.543 1.269 sum -8.999 -21.117 -5.215 23.539 Atomic orbital electron populations 1.21770 0.93397 1.03278 1.02414 1.22659 0.96107 0.82758 1.01054 1.87923 1.21419 1.28125 1.95629 1.22489 0.81637 0.93676 1.02386 1.22189 0.93476 0.93535 0.87461 0.92661 1.22701 0.94900 0.87806 1.03979 1.61651 1.13655 1.15899 1.35647 1.22109 0.88850 0.92395 1.05077 1.21084 0.82109 0.91577 0.76211 1.90662 1.46850 1.56899 1.50404 1.48097 1.05360 1.08671 1.71008 1.18768 0.95241 0.76820 0.95137 1.21783 1.47299 0.94777 0.93560 0.92866 1.25716 0.95159 0.96296 1.01780 1.70026 1.49369 1.02367 1.34872 0.85532 0.77700 0.78142 0.80423 1.19200 1.19949 1.21265 1.21515 0.91507 0.93514 0.94567 1.19833 0.92836 0.95598 0.99601 1.29144 0.93408 0.92848 0.91745 1.81268 1.12464 1.12852 1.10091 1.22791 0.96792 1.01195 0.89842 1.22629 0.93327 0.82168 1.02667 1.87993 1.79645 1.24288 1.38855 0.88999 0.92544 0.92787 0.92010 0.92547 0.89300 0.91653 0.87348 0.91940 0.85655 0.88744 0.94856 0.97872 0.92668 0.89812 0.87455 0.84850 0.86277 0.92751 0.90484 0.86880 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 71.98 0.74 -1.14 16 2 C 0.05 0.70 6.66 71.98 0.48 1.17 16 3 O -0.41 -8.61 10.31 -144.55 -1.49 -10.10 16 4 C 0.07 1.23 5.60 71.98 0.40 1.64 16 5 C 0.09 1.94 3.09 30.63 0.09 2.03 16 6 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 7 C 0.03 0.60 4.93 86.31 0.43 1.02 16 8 N -0.54 -13.41 4.42 -899.77 -3.98 -17.38 16 9 C 0.05 1.02 3.91 85.56 0.33 1.36 16 10 C 0.50 17.35 7.24 87.66 0.63 17.99 16 11 O -0.57 -26.25 14.26 -3.02 -0.04 -26.29 16 12 N -0.60 -20.54 2.46 -826.15 -2.03 -22.57 16 13 C 0.26 12.35 5.16 85.63 0.44 12.79 16 14 C -0.54 -28.57 9.39 25.60 0.24 -28.33 16 15 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 16 C 0.01 0.52 5.46 84.65 0.46 0.98 16 17 N -0.93 -53.50 13.29 21.45 0.28 -53.22 16 18 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 C 0.11 2.57 5.08 86.38 0.44 3.01 16 23 C -0.04 -0.63 5.97 28.79 0.17 -0.45 16 24 C 0.25 5.00 15.43 89.44 1.38 6.38 16 25 N -0.49 -12.93 18.54 20.01 0.37 -12.56 16 26 C 0.02 0.55 5.30 86.31 0.46 1.01 16 27 C 0.07 1.71 7.01 72.01 0.50 2.21 16 28 O -0.39 -9.86 10.44 -144.55 -1.51 -11.37 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 1.48 8.09 -2.39 -0.02 1.46 16 37 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 38 H 0.13 2.23 7.61 -2.39 -0.02 2.21 16 39 H 0.09 1.42 6.83 -2.39 -0.02 1.40 16 40 H 0.03 1.56 8.07 -2.38 -0.02 1.54 16 41 H 0.00 0.18 7.42 -2.38 -0.02 0.16 16 42 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 44 H 0.11 1.74 6.61 -2.39 -0.02 1.73 16 45 H 0.13 1.53 7.12 -2.39 -0.02 1.51 16 46 H 0.12 2.08 8.14 -2.38 -0.02 2.07 16 47 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 2.42 6.10 -2.39 -0.01 2.41 16 49 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 50 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.38 412.98 1.76 -75.62 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.92 Total: 10.53 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 7.21 Total: 21.67 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -5.35 Total: -105.72 kcal Atomic # 8 Polarization: -44.71 SS G_CDS: -3.04 Total: -47.75 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -77.38 1.76 -75.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599618166.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.071 kcal (2) G-P(sol) polarization free energy of solvation -77.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds