Wall clock time and date at job start Sat Apr 11 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46764 * 2 1 4 4 C 1.42897 * 113.99809 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47085 * 180.02562 * 4 3 2 6 6 N 1.40085 * 126.03892 * 270.15803 * 5 4 3 7 7 C 1.30833 * 108.20649 * 180.23417 * 6 5 4 8 8 C 1.50700 * 125.90289 * 179.81545 * 7 6 5 9 9 C 1.39873 * 108.20205 * 359.77852 * 7 6 5 10 10 C 1.50699 * 126.04137 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47131 * 270.02507 * 10 9 7 12 12 O 1.21293 * 120.00185 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99967 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00104 * 0.02562 * 13 11 10 15 15 H 1.08008 * 120.00002 * 325.64851 * 14 13 11 16 16 C 1.38949 * 120.00417 * 145.64996 * 14 13 11 17 17 N 1.31417 * 119.99479 * 338.16300 * 16 14 13 18 18 Si 1.86796 * 120.00374 * 158.16107 * 16 14 13 19 19 H 1.48499 * 109.47387 * 90.00073 * 18 16 14 20 20 H 1.48505 * 109.47037 * 209.99988 * 18 16 14 21 21 H 1.48500 * 109.47164 * 330.00092 * 18 16 14 22 22 C 1.46503 * 119.99966 * 179.97438 * 13 11 10 23 23 C 1.52999 * 109.47063 * 84.55224 * 22 13 11 24 24 O 1.42904 * 109.47133 * 64.99721 * 23 22 13 25 25 C 1.42904 * 113.99870 * 179.97438 * 24 23 22 26 26 C 1.34952 * 126.03738 * 90.00118 * 5 4 3 27 27 C 1.50698 * 126.12598 * 0.03858 * 26 5 4 28 28 H 1.09003 * 109.47308 * 299.99449 * 1 2 3 29 29 H 1.08996 * 109.47433 * 59.99921 * 1 2 3 30 30 H 1.09004 * 109.46760 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47367 * 240.00042 * 2 1 3 32 32 H 1.09005 * 109.47246 * 120.00136 * 2 1 3 33 33 H 1.09003 * 109.47191 * 60.00224 * 4 3 2 34 34 H 1.09003 * 109.47548 * 300.00432 * 4 3 2 35 35 H 1.09000 * 109.47394 * 269.95821 * 8 7 6 36 36 H 1.09007 * 109.46773 * 29.95448 * 8 7 6 37 37 H 1.09002 * 109.47687 * 149.95522 * 8 7 6 38 38 H 1.09001 * 109.47238 * 30.02233 * 10 9 7 39 39 H 1.09004 * 109.47191 * 150.02073 * 10 9 7 40 40 H 0.97002 * 119.99494 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47005 * 204.55213 * 22 13 11 42 42 H 1.08996 * 109.47187 * 324.55238 * 22 13 11 43 43 H 1.08998 * 109.47418 * 185.00268 * 23 22 13 44 44 H 1.09005 * 109.47102 * 305.00224 * 23 22 13 45 45 H 1.09000 * 109.46579 * 60.00453 * 25 24 23 46 46 H 1.08998 * 109.46952 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47011 * 300.00624 * 25 24 23 48 48 H 1.09002 * 109.47281 * 269.68680 * 27 26 5 49 49 H 1.09003 * 109.47346 * 149.68771 * 27 26 5 50 50 H 1.09001 * 109.46989 * 29.68644 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 7 3.8085 2.8757 0.0011 6 7 4.0184 3.6731 -1.1313 7 6 4.3453 4.8748 -0.7302 8 6 4.6621 6.0481 -1.6211 9 6 4.3491 4.8825 0.6685 10 6 4.6715 6.0632 1.5478 11 6 6.1500 6.0841 1.8387 12 8 6.8710 5.2244 1.3778 13 7 6.6712 7.0579 2.6110 14 6 5.8562 8.0293 3.1324 15 1 5.0053 8.3807 2.5676 16 6 6.1249 8.5617 4.3874 17 7 6.8535 7.8844 5.2461 18 14 5.4506 10.2401 4.8538 19 1 4.1146 10.0797 5.4820 20 1 6.3741 10.8949 5.8150 21 1 5.3271 11.0800 3.6354 22 6 8.1084 7.0779 2.8942 23 6 8.8439 7.7798 1.7509 24 8 8.4490 9.1523 1.7021 25 6 9.0820 9.9026 0.6635 26 6 4.0127 3.6424 1.0927 27 6 3.8940 3.1958 2.5271 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8339 0.9765 -0.8892 34 1 3.8333 0.9767 0.8908 35 1 5.7304 6.0623 -1.8372 36 1 4.1041 5.9577 -2.5532 37 1 4.3810 6.9731 -1.1176 38 1 4.3886 6.9841 1.0377 39 1 4.1182 5.9814 2.4834 40 1 7.0408 8.2560 6.1224 41 1 8.2878 7.6151 3.8256 42 1 8.4745 6.0555 2.9882 43 1 9.9192 7.7167 1.9175 44 1 8.5936 7.2960 0.8067 45 1 8.8370 9.4629 -0.3033 46 1 8.7298 10.9337 0.6939 47 1 10.1622 9.8835 0.8082 48 1 2.8737 3.3577 2.8748 49 1 4.5839 3.7706 3.1450 50 1 4.1385 2.1360 2.5990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601625042.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:32 Heat of formation + Delta-G solvation = -43.879476 kcal Electronic energy + Delta-G solvation = -30782.099136 eV Core-core repulsion = 26619.119688 eV Total energy + Delta-G solvation = -4162.979448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.00409 -38.52205 -38.13123 -36.85523 -34.59878 -33.61860 -32.42861 -31.47284 -31.40008 -29.63391 -28.57892 -28.13969 -25.91605 -25.57875 -24.59780 -23.97705 -23.10374 -21.79434 -19.50828 -19.21817 -18.74609 -17.22308 -16.88246 -16.42560 -16.16134 -16.05247 -15.33459 -15.25067 -14.61818 -14.38961 -14.29040 -14.06090 -13.94955 -13.70542 -13.58431 -13.12508 -12.91290 -12.80070 -12.75697 -12.42834 -12.38023 -12.01640 -11.94769 -11.86759 -11.70289 -11.56574 -11.45510 -11.35136 -11.12279 -11.06687 -10.91898 -10.69066 -10.55999 -10.30548 -10.03828 -9.94499 -9.90446 -9.06002 -8.89810 -8.73255 -8.38411 -7.72686 -7.41226 -6.26206 -3.88845 2.09172 2.56181 3.20996 3.23076 3.31314 3.38108 3.75930 4.03207 4.25092 4.54681 4.57332 4.73648 4.78203 4.89759 4.95844 5.02628 5.04954 5.19847 5.25971 5.36055 5.38986 5.59922 5.68582 5.70944 5.77140 5.80183 5.82701 5.90069 5.98975 6.01873 6.02680 6.07206 6.16062 6.17705 6.24581 6.42661 6.51491 6.54045 6.63278 6.75566 6.82615 6.84018 7.18388 7.36390 7.44756 7.57653 7.88784 8.07926 8.15651 8.48570 9.22671 9.66355 10.07514 10.76627 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.003035 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.659682 B = 9224.105023 C =10097.676600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 O -0.404 6.404 4 C 0.317 3.683 5 N -0.377 5.377 6 N -0.302 5.302 7 C 0.096 3.904 8 C -0.070 4.070 9 C -0.190 4.190 10 C -0.044 4.044 11 C 0.471 3.529 12 O -0.604 6.604 13 N -0.433 5.433 14 C -0.320 4.320 15 H 0.087 0.913 16 C 0.047 3.953 17 N -0.865 5.865 18 Si 0.912 3.088 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.115 3.885 23 C 0.053 3.947 24 O -0.364 6.364 25 C 0.031 3.969 26 C 0.099 3.901 27 C -0.089 4.089 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.267 0.733 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.036 0.964 44 H 0.041 0.959 45 H 0.031 0.969 46 H 0.077 0.923 47 H 0.029 0.971 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 -8.717 -6.884 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.323 6.323 4 C 0.156 3.844 5 N -0.164 5.164 6 N -0.123 5.123 7 C -0.071 4.071 8 C -0.129 4.129 9 C -0.201 4.201 10 C -0.085 4.085 11 C 0.260 3.740 12 O -0.490 6.490 13 N -0.151 5.151 14 C -0.448 4.448 15 H 0.105 0.895 16 C -0.157 4.157 17 N -0.503 5.503 18 Si 0.739 3.261 19 H -0.207 1.207 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.009 4.009 23 C -0.025 4.025 24 O -0.282 6.282 25 C -0.066 4.066 26 C -0.025 4.025 27 C -0.147 4.147 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.095 0.905 47 H 0.047 0.953 48 H 0.096 0.904 49 H 0.110 0.890 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.940 -9.781 -7.757 13.825 hybrid contribution 0.311 1.068 0.787 1.363 sum -5.629 -8.713 -6.969 12.497 Atomic orbital electron populations 1.21743 0.93351 1.02279 1.03436 1.22403 0.95903 0.82501 1.00339 1.87910 1.21386 1.27538 1.95429 1.21975 0.81807 0.78662 1.01981 1.47991 1.55619 1.08942 1.03832 1.77191 1.25165 1.02546 1.07432 1.22135 0.97617 0.93614 0.93776 1.20147 1.02209 0.93182 0.97319 1.19400 1.12284 0.95296 0.93095 1.19704 0.95384 0.94770 0.98607 1.20378 0.89413 0.81381 0.82797 1.90513 1.62051 1.39606 1.56801 1.43352 1.05372 1.22762 1.43587 1.19286 1.10637 1.15349 0.99512 0.89508 1.25190 0.97052 0.98701 0.94791 1.69911 1.38477 1.36092 1.05796 0.86193 0.78252 0.83254 0.78438 1.20689 1.21015 1.19322 1.21436 0.81894 0.99091 0.98510 1.23041 0.96785 0.82333 1.00341 1.88134 1.66847 1.21403 1.51842 1.22637 0.96173 0.96651 0.91170 1.20717 1.00437 0.91060 0.90264 1.20428 1.03371 1.01366 0.89523 0.91680 0.91741 0.90884 0.93025 0.92984 0.90098 0.90099 0.90548 0.91457 0.90375 0.89732 0.89139 0.92301 0.86680 0.91577 0.94575 0.94113 0.94996 0.90487 0.95274 0.90431 0.89043 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 37.16 0.38 -0.78 16 2 C 0.07 0.58 6.66 37.16 0.25 0.82 16 3 O -0.40 -5.35 10.57 -35.23 -0.37 -5.72 16 4 C 0.32 4.20 7.05 59.85 0.42 4.62 16 5 N -0.38 -6.69 3.88 -61.90 -0.24 -6.93 16 6 N -0.30 -5.87 12.58 33.67 0.42 -5.45 16 7 C 0.10 1.85 7.22 -82.41 -0.59 1.25 16 8 C -0.07 -1.11 10.26 36.01 0.37 -0.74 16 9 C -0.19 -3.79 4.59 -105.05 -0.48 -4.27 16 10 C -0.04 -0.90 4.26 -29.04 -0.12 -1.02 16 11 C 0.47 11.32 7.59 -10.98 -0.08 11.24 16 12 O -0.60 -15.81 15.71 5.55 0.09 -15.72 16 13 N -0.43 -10.74 2.51 -114.81 -0.29 -11.03 16 14 C -0.32 -8.03 8.48 -14.93 -0.13 -8.15 16 15 H 0.09 2.10 6.98 -52.48 -0.37 1.73 16 16 C 0.05 1.19 4.93 -17.47 -0.09 1.11 16 17 N -0.87 -22.64 11.34 55.50 0.63 -22.01 16 18 Si 0.91 19.89 29.61 -169.99 -5.03 14.86 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 22 C 0.11 2.75 5.29 -4.04 -0.02 2.73 16 23 C 0.05 1.11 6.24 37.16 0.23 1.35 16 24 O -0.36 -7.80 10.44 -35.23 -0.37 -8.17 16 25 C 0.03 0.50 11.01 101.05 1.11 1.61 16 26 C 0.10 1.82 6.93 -82.26 -0.57 1.25 16 27 C -0.09 -1.35 9.73 36.00 0.35 -1.00 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.87 7.04 -51.93 -0.37 0.51 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.16 7.26 -51.93 -0.38 0.78 16 38 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 39 H 0.09 1.82 7.73 -51.93 -0.40 1.42 16 40 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 41 H 0.12 2.96 5.36 -51.93 -0.28 2.68 16 42 H 0.07 1.60 7.59 -51.93 -0.39 1.21 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.09 1.55 7.78 -51.93 -0.40 1.14 16 50 H 0.06 0.80 7.07 -51.93 -0.37 0.43 16 LS Contribution 414.34 15.07 6.24 6.24 Total: -1.00 -33.09 414.34 -6.25 -39.34 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.36 Total: 4.58 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 1.03 Total: 10.02 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.52 Total: -45.42 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.65 Total: -29.62 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.09 -6.25 -39.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601625042.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.540 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds