Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46764 * 2 1 4 4 C 1.42897 * 113.99809 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47085 * 180.02562 * 4 3 2 6 6 N 1.40085 * 126.03892 * 270.15803 * 5 4 3 7 7 C 1.30833 * 108.20649 * 180.23417 * 6 5 4 8 8 C 1.50700 * 125.90289 * 179.81545 * 7 6 5 9 9 C 1.39873 * 108.20205 * 359.77852 * 7 6 5 10 10 C 1.50699 * 126.04137 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47131 * 270.02507 * 10 9 7 12 12 O 1.21293 * 120.00185 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99967 * 179.97438 * 11 10 9 14 14 C 1.37094 * 120.00104 * 0.02562 * 13 11 10 15 15 H 1.08008 * 120.00002 * 325.64851 * 14 13 11 16 16 C 1.38949 * 120.00417 * 145.64996 * 14 13 11 17 17 N 1.31417 * 119.99479 * 338.16300 * 16 14 13 18 18 Si 1.86796 * 120.00374 * 158.16107 * 16 14 13 19 19 H 1.48499 * 109.47387 * 90.00073 * 18 16 14 20 20 H 1.48505 * 109.47037 * 209.99988 * 18 16 14 21 21 H 1.48500 * 109.47164 * 330.00092 * 18 16 14 22 22 C 1.46503 * 119.99966 * 179.97438 * 13 11 10 23 23 C 1.52999 * 109.47063 * 84.55224 * 22 13 11 24 24 O 1.42904 * 109.47133 * 64.99721 * 23 22 13 25 25 C 1.42904 * 113.99870 * 179.97438 * 24 23 22 26 26 C 1.34952 * 126.03738 * 90.00118 * 5 4 3 27 27 C 1.50698 * 126.12598 * 0.03858 * 26 5 4 28 28 H 1.09003 * 109.47308 * 299.99449 * 1 2 3 29 29 H 1.08996 * 109.47433 * 59.99921 * 1 2 3 30 30 H 1.09004 * 109.46760 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47367 * 240.00042 * 2 1 3 32 32 H 1.09005 * 109.47246 * 120.00136 * 2 1 3 33 33 H 1.09003 * 109.47191 * 60.00224 * 4 3 2 34 34 H 1.09003 * 109.47548 * 300.00432 * 4 3 2 35 35 H 1.09000 * 109.47394 * 269.95821 * 8 7 6 36 36 H 1.09007 * 109.46773 * 29.95448 * 8 7 6 37 37 H 1.09002 * 109.47687 * 149.95522 * 8 7 6 38 38 H 1.09001 * 109.47238 * 30.02233 * 10 9 7 39 39 H 1.09004 * 109.47191 * 150.02073 * 10 9 7 40 40 H 0.97002 * 119.99494 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47005 * 204.55213 * 22 13 11 42 42 H 1.08996 * 109.47187 * 324.55238 * 22 13 11 43 43 H 1.08998 * 109.47418 * 185.00268 * 23 22 13 44 44 H 1.09005 * 109.47102 * 305.00224 * 23 22 13 45 45 H 1.09000 * 109.46579 * 60.00453 * 25 24 23 46 46 H 1.08998 * 109.46952 * 180.02562 * 25 24 23 47 47 H 1.08998 * 109.47011 * 300.00624 * 25 24 23 48 48 H 1.09002 * 109.47281 * 269.68680 * 27 26 5 49 49 H 1.09003 * 109.47346 * 149.68771 * 27 26 5 50 50 H 1.09001 * 109.46989 * 29.68644 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 7 3.8085 2.8757 0.0011 6 7 4.0184 3.6731 -1.1313 7 6 4.3453 4.8748 -0.7302 8 6 4.6621 6.0481 -1.6211 9 6 4.3491 4.8825 0.6685 10 6 4.6715 6.0632 1.5478 11 6 6.1500 6.0841 1.8387 12 8 6.8710 5.2244 1.3778 13 7 6.6712 7.0579 2.6110 14 6 5.8562 8.0293 3.1324 15 1 5.0053 8.3807 2.5676 16 6 6.1249 8.5617 4.3874 17 7 6.8535 7.8844 5.2461 18 14 5.4506 10.2401 4.8538 19 1 4.1146 10.0797 5.4820 20 1 6.3741 10.8949 5.8150 21 1 5.3271 11.0800 3.6354 22 6 8.1084 7.0779 2.8942 23 6 8.8439 7.7798 1.7509 24 8 8.4490 9.1523 1.7021 25 6 9.0820 9.9026 0.6635 26 6 4.0127 3.6424 1.0927 27 6 3.8940 3.1958 2.5271 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8339 0.9765 -0.8892 34 1 3.8333 0.9767 0.8908 35 1 5.7304 6.0623 -1.8372 36 1 4.1041 5.9577 -2.5532 37 1 4.3810 6.9731 -1.1176 38 1 4.3886 6.9841 1.0377 39 1 4.1182 5.9814 2.4834 40 1 7.0408 8.2560 6.1224 41 1 8.2878 7.6151 3.8256 42 1 8.4745 6.0555 2.9882 43 1 9.9192 7.7167 1.9175 44 1 8.5936 7.2960 0.8067 45 1 8.8370 9.4629 -0.3033 46 1 8.7298 10.9337 0.6939 47 1 10.1622 9.8835 0.8082 48 1 2.8737 3.3577 2.8748 49 1 4.5839 3.7706 3.1450 50 1 4.1385 2.1360 2.5990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601625042.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -65.644522 kcal Electronic energy + Delta-G solvation = -30783.042940 eV Core-core repulsion = 26619.119688 eV Total energy + Delta-G solvation = -4163.923251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37946 -40.31931 -39.09603 -38.47078 -36.48151 -34.87243 -33.87142 -33.40089 -32.23659 -31.24298 -29.82768 -29.53700 -27.30595 -27.09690 -26.34897 -25.28020 -23.77020 -23.50737 -21.12756 -20.58898 -20.40375 -18.61120 -18.20315 -17.83517 -17.62434 -17.06951 -17.03837 -16.85382 -16.17194 -15.99961 -15.94433 -15.61193 -15.24434 -14.99106 -14.73467 -14.42246 -14.22722 -14.13967 -13.93487 -13.72467 -13.56170 -13.45160 -13.28208 -13.15011 -13.05486 -12.95780 -12.84075 -12.68081 -12.48408 -12.42734 -12.38291 -12.29027 -12.20883 -12.05067 -11.72024 -11.42512 -10.91931 -10.78002 -10.50137 -10.25997 -10.08240 -9.36911 -9.19260 -8.17751 -5.85589 0.77543 1.37083 1.48160 1.55313 1.66130 1.76549 2.16978 2.44068 2.83410 3.03080 3.12931 3.33900 3.47137 3.73709 3.85663 4.02046 4.12219 4.17808 4.25680 4.29310 4.35174 4.37175 4.44249 4.45415 4.56639 4.57778 4.60567 4.64721 4.68619 4.72527 4.75279 4.79699 4.84322 4.91526 4.97165 4.98262 4.99277 5.03759 5.20466 5.23047 5.32658 5.43762 5.62027 5.75945 5.89504 6.10137 6.25361 6.44928 6.55339 6.75777 7.29115 7.76391 8.17335 8.85628 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.003035 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.659682 B = 9224.105023 C =10097.676600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.429 6.429 4 C 0.309 3.691 5 N -0.379 5.379 6 N -0.324 5.324 7 C 0.082 3.918 8 C -0.067 4.067 9 C -0.224 4.224 10 C -0.029 4.029 11 C 0.465 3.535 12 O -0.630 6.630 13 N -0.441 5.441 14 C -0.331 4.331 15 H 0.093 0.907 16 C 0.010 3.990 17 N -0.894 5.894 18 Si 0.972 3.028 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.113 3.887 23 C 0.066 3.934 24 O -0.395 6.395 25 C 0.025 3.975 26 C 0.097 3.903 27 C -0.084 4.084 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.268 0.732 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.030 0.970 45 H 0.039 0.961 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.096 0.904 49 H 0.069 0.931 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.719 -8.889 -7.186 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.348 6.348 4 C 0.149 3.851 5 N -0.165 5.165 6 N -0.146 5.146 7 C -0.085 4.085 8 C -0.126 4.126 9 C -0.235 4.235 10 C -0.070 4.070 11 C 0.255 3.745 12 O -0.518 6.518 13 N -0.159 5.159 14 C -0.458 4.458 15 H 0.111 0.889 16 C -0.192 4.192 17 N -0.532 5.532 18 Si 0.797 3.203 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.011 4.011 23 C -0.012 4.012 24 O -0.314 6.314 25 C -0.071 4.071 26 C -0.028 4.028 27 C -0.142 4.142 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.112 0.888 47 H 0.068 0.932 48 H 0.115 0.885 49 H 0.088 0.912 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.801 -9.967 -8.077 14.520 hybrid contribution 0.573 1.012 0.867 1.450 sum -6.228 -8.956 -7.210 13.076 Atomic orbital electron populations 1.21779 0.92769 1.03690 1.02441 1.22720 0.96373 0.80816 1.01999 1.87876 1.20975 1.30254 1.95718 1.22349 0.82376 0.76478 1.03859 1.48361 1.54906 1.10184 1.03084 1.77109 1.25952 1.02896 1.08668 1.22580 0.97461 0.94402 0.94057 1.20208 1.02089 0.92447 0.97853 1.19509 1.14555 0.95892 0.93549 1.19530 0.92715 0.95815 0.98891 1.20955 0.90756 0.80653 0.82104 1.90476 1.63080 1.40533 1.57752 1.43547 1.05727 1.23015 1.43633 1.19538 1.10989 1.15510 0.99791 0.88898 1.25904 0.97354 1.01330 0.94620 1.70005 1.39693 1.37379 1.06144 0.85262 0.77809 0.79249 0.77974 1.19785 1.21278 1.19058 1.21367 0.82256 0.98419 0.99086 1.22788 0.97631 0.82428 0.98351 1.88063 1.68158 1.21300 1.53844 1.22883 0.97295 0.96814 0.90144 1.21172 0.99037 0.90924 0.91682 1.20470 1.03947 1.02550 0.87278 0.92476 0.92916 0.88263 0.91669 0.90946 0.88995 0.87442 0.91098 0.89474 0.89683 0.88935 0.89145 0.92235 0.88393 0.93004 0.92052 0.95220 0.94231 0.88752 0.93192 0.88511 0.91217 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.06 0.87 6.66 71.98 0.48 1.35 16 3 O -0.43 -10.66 10.57 -148.98 -1.57 -12.23 16 4 C 0.31 7.65 7.05 127.77 0.90 8.55 16 5 N -0.38 -13.14 3.88 -450.21 -1.75 -14.89 16 6 N -0.32 -12.54 12.58 -47.38 -0.60 -13.14 16 7 C 0.08 3.15 7.22 43.10 0.31 3.46 16 8 C -0.07 -2.12 10.26 71.24 0.73 -1.39 16 9 C -0.22 -8.98 4.59 -20.14 -0.09 -9.07 16 10 C -0.03 -1.20 4.26 29.10 0.12 -1.07 16 11 C 0.46 22.79 7.59 87.66 0.67 23.45 16 12 O -0.63 -33.84 15.71 -3.07 -0.05 -33.88 16 13 N -0.44 -22.29 2.51 -635.53 -1.60 -23.89 16 14 C -0.33 -16.65 8.48 84.04 0.71 -15.94 16 15 H 0.09 4.47 6.98 -2.91 -0.02 4.45 16 16 C 0.01 0.51 4.93 84.93 0.42 0.92 16 17 N -0.89 -47.28 11.34 21.66 0.25 -47.03 16 18 Si 0.97 40.40 29.61 68.60 2.03 42.44 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 20 H -0.29 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 C 0.11 5.54 5.29 86.38 0.46 5.99 16 23 C 0.07 2.77 6.24 71.98 0.45 3.22 16 24 O -0.39 -16.63 10.44 -148.98 -1.56 -18.18 16 25 C 0.02 0.76 11.01 113.37 1.25 2.01 16 26 C 0.10 3.54 6.93 41.40 0.29 3.83 16 27 C -0.08 -2.48 9.73 71.24 0.69 -1.78 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.11 2.03 7.04 -2.39 -0.02 2.02 16 35 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.08 2.49 7.26 -2.39 -0.02 2.48 16 38 H 0.09 3.61 6.76 -2.39 -0.02 3.59 16 39 H 0.09 3.69 7.73 -2.38 -0.02 3.67 16 40 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 41 H 0.10 5.16 5.36 -2.38 -0.01 5.15 16 42 H 0.05 2.61 7.59 -2.39 -0.02 2.60 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 47 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.07 2.37 7.78 -2.39 -0.02 2.35 16 50 H 0.09 2.09 7.07 -2.39 -0.02 2.08 16 Total: -1.00 -71.89 414.34 4.21 -67.68 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.92 Total: 30.90 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 8.12 Total: 22.23 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -3.69 Total: -98.95 kcal Atomic # 8 Polarization: -61.12 SS G_CDS: -3.18 Total: -64.30 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.44 kcal Total: -71.89 4.21 -67.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601625042.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.037 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds