Wall clock time and date at job start Sat Apr 11 2020 05:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.46848 * 2 1 4 4 C 1.34232 * 116.99758 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00060 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99699 * 180.02562 * 4 3 2 7 7 C 1.52999 * 115.54883 * 294.98730 * 6 4 3 8 8 N 1.46505 * 109.47254 * 300.61886 * 7 6 4 9 9 C 1.34771 * 119.99985 * 175.23470 * 8 7 6 10 10 O 1.21586 * 120.00288 * 0.28512 * 9 8 7 11 11 N 1.34784 * 119.99922 * 180.27618 * 9 8 7 12 12 C 1.46499 * 119.99915 * 180.02562 * 11 9 8 13 13 C 1.53041 * 109.46070 * 275.03043 * 12 11 9 14 14 C 1.53186 * 109.31260 * 178.60308 * 13 12 11 15 15 N 1.46932 * 108.76762 * 54.65486 * 14 13 12 16 16 C 1.36940 * 120.63045 * 126.35864 * 15 14 13 17 17 H 1.07993 * 120.00139 * 323.80257 * 16 15 14 18 18 C 1.38811 * 119.99290 * 143.80759 * 16 15 14 19 19 N 1.31614 * 120.00588 * 344.49861 * 18 16 15 20 20 Si 1.86806 * 119.99723 * 164.50110 * 18 16 15 21 21 H 1.48503 * 109.46877 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47124 * 119.99507 * 20 18 16 23 23 H 1.48501 * 109.46998 * 240.00031 * 20 18 16 24 24 C 1.46923 * 118.73780 * 306.38692 * 15 14 13 25 25 C 1.53038 * 109.45658 * 154.97594 * 12 11 9 26 26 C 1.52995 * 117.50247 * 80.65790 * 6 4 3 27 27 C 1.53002 * 117.49766 * 149.31813 * 6 4 3 28 28 H 1.08997 * 109.47533 * 299.99594 * 1 2 3 29 29 H 1.08998 * 109.47233 * 60.00285 * 1 2 3 30 30 H 1.09006 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47533 * 240.00406 * 2 1 3 32 32 H 1.08998 * 109.47233 * 119.99715 * 2 1 3 33 33 H 1.09008 * 109.47333 * 180.62589 * 7 6 4 34 34 H 1.09002 * 109.47530 * 60.62338 * 7 6 4 35 35 H 0.97001 * 119.99586 * 355.51670 * 8 7 6 36 36 H 0.97001 * 119.99710 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.45783 * 35.00121 * 12 11 9 38 38 H 1.09011 * 109.49632 * 298.56654 * 13 12 11 39 39 H 1.09000 * 109.49924 * 58.66160 * 13 12 11 40 40 H 1.08994 * 109.59886 * 294.86867 * 14 13 12 41 41 H 1.09003 * 109.70403 * 174.50335 * 14 13 12 42 42 H 0.96999 * 120.00480 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58836 * 293.82122 * 24 15 14 44 44 H 1.08997 * 109.70733 * 173.46099 * 24 15 14 45 45 H 1.09004 * 109.49864 * 301.33618 * 25 12 11 46 46 H 1.09006 * 109.50171 * 61.43621 * 25 12 11 47 47 H 1.09008 * 117.50228 * 215.00423 * 26 6 4 48 48 H 1.09001 * 117.49744 * 0.02562 * 26 6 4 49 49 H 1.08992 * 117.50194 * 359.97294 * 27 6 4 50 50 H 1.08999 * 117.49752 * 144.97674 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.6333 3.7708 -1.2505 8 7 4.1759 3.0880 -2.4277 9 6 3.9573 3.5909 -3.6588 10 8 3.3142 4.6142 -3.7922 11 7 4.4517 2.9597 -4.7422 12 6 4.2146 3.5067 -6.0804 13 6 2.8585 3.0206 -6.5970 14 6 2.5984 3.6225 -7.9814 15 7 3.7306 3.2957 -8.8592 16 6 3.5234 2.6836 -10.0665 17 1 2.7438 1.9435 -10.1700 18 6 4.3156 3.0145 -11.1573 19 7 5.0474 4.1081 -11.1316 20 14 4.3429 1.9076 -12.6618 21 1 3.4389 0.7502 -12.4412 22 1 3.8847 2.6738 -13.8485 23 1 5.7263 1.4190 -12.8917 24 6 5.0892 3.6376 -8.4166 25 6 5.3212 3.0359 -7.0270 26 6 3.9877 3.6738 1.3395 27 6 5.2695 3.1438 0.6920 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.1020 4.7499 -1.1504 34 1 2.5564 3.8937 -1.3659 35 1 4.6889 2.2717 -2.3213 36 1 4.9646 2.1432 -4.6358 37 1 4.2161 4.5956 -6.0330 38 1 2.8649 1.9329 -6.6682 39 1 2.0732 3.3361 -5.9100 40 1 2.5019 4.7049 -7.8973 41 1 1.6814 3.2050 -8.3973 42 1 5.6007 4.3395 -11.8940 43 1 5.1958 4.7213 -8.3679 44 1 5.8176 3.2299 -9.1175 45 1 6.2890 3.3623 -6.6461 46 1 5.3042 1.9481 -7.0942 47 1 3.8271 4.7519 1.3298 48 1 3.6156 3.1507 2.2205 49 1 5.7401 2.2725 1.1472 50 1 5.9524 3.8731 0.2562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613730171.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:34 Heat of formation + Delta-G solvation = -75.613326 kcal Electronic energy + Delta-G solvation = -29919.860439 eV Core-core repulsion = 25755.504908 eV Total energy + Delta-G solvation = -4164.355531 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17819 -39.90525 -38.26775 -37.35196 -36.68198 -34.36796 -34.12693 -32.09697 -32.01098 -30.09686 -29.46724 -27.47590 -25.28348 -24.63058 -23.11610 -22.87774 -22.25982 -21.91188 -20.58910 -20.33222 -19.40860 -18.37435 -17.74784 -17.15274 -16.93006 -16.62138 -16.02909 -15.36517 -15.25147 -14.85140 -14.53071 -14.36586 -14.19512 -13.95468 -13.66202 -13.54853 -13.33917 -13.20588 -12.93402 -12.80671 -12.50775 -12.34817 -12.31347 -12.10228 -11.97906 -11.39213 -11.30665 -11.14513 -10.93618 -10.92636 -10.83887 -10.73588 -10.70538 -10.45175 -10.23165 -10.06079 -9.99176 -9.77374 -9.48157 -9.20355 -8.56493 -8.44203 -6.54561 -5.78756 -3.28888 1.71176 2.13030 2.64289 3.18688 3.36805 3.38143 3.44918 3.47451 3.96986 4.11779 4.21455 4.26658 4.48486 4.50051 4.53655 4.57637 4.85984 5.04707 5.08005 5.23435 5.34064 5.36531 5.37885 5.38799 5.41429 5.49779 5.54514 5.55555 5.60983 5.65674 5.93115 6.04239 6.12028 6.33494 6.34198 6.38570 6.51788 6.60709 6.64766 6.86000 6.92893 7.03474 7.12910 7.28476 7.33901 7.55744 7.83782 8.14301 8.51614 8.75734 9.23057 9.83989 10.46868 11.29428 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002193 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.752814 B =12765.754377 C =13551.736407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.348 6.348 4 C 0.502 3.498 5 O -0.502 6.502 6 C -0.158 4.158 7 C 0.186 3.814 8 N -0.755 5.755 9 C 0.704 3.296 10 O -0.589 6.589 11 N -0.739 5.739 12 C 0.169 3.831 13 C -0.139 4.139 14 C 0.148 3.852 15 N -0.590 5.590 16 C -0.259 4.259 17 H 0.062 0.938 18 C 0.010 3.990 19 N -0.897 5.897 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.289 1.289 24 C 0.180 3.820 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.138 4.138 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.395 0.605 36 H 0.391 0.609 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.254 0.746 43 H 0.024 0.976 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.116 0.884 48 H 0.105 0.895 49 H 0.108 0.892 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.249 -4.982 27.820 28.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.265 6.265 4 C 0.345 3.655 5 O -0.390 6.390 6 C -0.159 4.159 7 C 0.061 3.939 8 N -0.412 5.412 9 C 0.404 3.596 10 O -0.467 6.467 11 N -0.392 5.392 12 C 0.066 3.934 13 C -0.180 4.180 14 C 0.021 3.979 15 N -0.313 5.313 16 C -0.388 4.388 17 H 0.079 0.921 18 C -0.190 4.190 19 N -0.540 5.540 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.216 1.216 23 H -0.215 1.215 24 C 0.053 3.947 25 C -0.186 4.186 26 C -0.176 4.176 27 C -0.175 4.175 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.229 0.771 36 H 0.224 0.776 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.134 0.866 48 H 0.124 0.876 49 H 0.127 0.873 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.574 -4.260 27.523 27.969 hybrid contribution 0.578 -1.598 -0.700 1.838 sum -1.997 -5.858 26.823 27.527 Atomic orbital electron populations 1.21816 0.92283 1.03154 1.03795 1.23098 0.95700 0.79780 1.02656 1.86524 1.23899 1.32647 1.83392 1.22332 0.80793 0.90450 0.71962 1.90683 1.60657 1.42468 1.45165 1.21232 1.04481 0.92512 0.97723 1.20532 1.00324 0.93488 0.79559 1.45131 1.60403 1.30722 1.04913 1.15946 0.80093 0.83420 0.80153 1.90926 1.45138 1.25215 1.85416 1.45553 1.58316 1.29375 1.05929 1.20902 0.95671 0.98680 0.78183 1.22398 0.96210 1.00618 0.98762 1.20893 0.91854 0.96453 0.88681 1.43992 0.99833 1.69813 1.17697 1.19125 1.18308 1.15334 0.86081 0.92070 1.25262 1.00610 0.95873 0.97232 1.70035 1.30740 1.22526 1.30729 0.86275 0.77465 0.80341 0.82971 1.20152 1.21617 1.21522 1.20616 0.87984 0.96459 0.89662 1.22540 0.96150 1.01275 0.98661 1.23146 1.00512 1.01304 0.92608 1.23233 0.89658 1.03774 1.00841 0.91424 0.91143 0.90062 0.91002 0.91221 0.90169 0.89927 0.77129 0.77623 0.89985 0.92554 0.92725 0.96165 0.92597 0.93630 0.95831 0.90471 0.92768 0.92221 0.86584 0.87645 0.87344 0.86695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.29 37.16 0.38 -0.53 16 2 C 0.06 0.49 6.19 37.16 0.23 0.72 16 3 O -0.35 -3.46 10.22 -39.26 -0.40 -3.87 16 4 C 0.50 5.10 6.83 36.01 0.25 5.35 16 5 O -0.50 -6.12 16.43 -18.75 -0.31 -6.42 16 6 C -0.16 -1.26 2.11 -155.66 -0.33 -1.59 16 7 C 0.19 1.82 5.53 -4.04 -0.02 1.80 16 8 N -0.75 -8.66 5.40 -65.22 -0.35 -9.01 16 9 C 0.70 10.83 8.53 -86.92 -0.74 10.09 16 10 O -0.59 -11.40 16.00 5.29 0.08 -11.32 16 11 N -0.74 -10.88 5.08 -58.64 -0.30 -11.18 16 12 C 0.17 3.04 2.42 -67.89 -0.16 2.87 16 13 C -0.14 -2.65 5.65 -26.61 -0.15 -2.80 16 14 C 0.15 3.28 6.52 -3.71 -0.02 3.25 16 15 N -0.59 -14.95 2.94 -172.32 -0.51 -15.46 16 16 C -0.26 -7.14 9.49 -15.06 -0.14 -7.28 16 17 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 18 C 0.01 0.28 4.90 -17.43 -0.09 0.20 16 19 N -0.90 -26.18 11.74 55.49 0.65 -25.53 16 20 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 C 0.18 4.23 5.26 -3.71 -0.02 4.21 16 25 C -0.15 -2.70 5.55 -26.61 -0.15 -2.85 16 26 C -0.14 -0.73 9.95 -26.70 -0.27 -1.00 16 27 C -0.14 -0.84 9.76 -26.69 -0.26 -1.10 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.18 16 32 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.08 0.74 8.11 -51.92 -0.42 0.32 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.40 3.97 8.29 -40.82 -0.34 3.63 16 36 H 0.39 4.74 8.62 -40.82 -0.35 4.39 16 37 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 38 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 42 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 2.00 6.66 -51.93 -0.35 1.65 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.12 0.45 8.14 -51.92 -0.42 0.03 16 48 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.11 0.70 7.99 -51.93 -0.41 0.28 16 50 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 411.15 15.07 6.20 6.20 Total: -1.00 -33.93 411.15 -10.02 -43.95 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -8.57 Total: 4.70 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -1.49 Total: 11.34 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.51 Total: -61.18 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.62 Total: -21.61 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.93 -10.02 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613730171.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.663 kcal (2) G-P(sol) polarization free energy of solvation -33.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds