Wall clock time and date at job start Sat Apr 11 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.46848 * 2 1 4 4 C 1.34232 * 116.99758 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00060 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99699 * 180.02562 * 4 3 2 7 7 C 1.52999 * 115.54883 * 294.98730 * 6 4 3 8 8 N 1.46505 * 109.47254 * 300.61886 * 7 6 4 9 9 C 1.34771 * 119.99985 * 175.23470 * 8 7 6 10 10 O 1.21586 * 120.00288 * 0.28512 * 9 8 7 11 11 N 1.34784 * 119.99922 * 180.27618 * 9 8 7 12 12 C 1.46499 * 119.99915 * 180.02562 * 11 9 8 13 13 C 1.53041 * 109.46070 * 275.03043 * 12 11 9 14 14 C 1.53186 * 109.31260 * 178.60308 * 13 12 11 15 15 N 1.46932 * 108.76762 * 54.65486 * 14 13 12 16 16 C 1.36940 * 120.63045 * 126.35864 * 15 14 13 17 17 H 1.07993 * 120.00139 * 323.80257 * 16 15 14 18 18 C 1.38811 * 119.99290 * 143.80759 * 16 15 14 19 19 N 1.31614 * 120.00588 * 344.49861 * 18 16 15 20 20 Si 1.86806 * 119.99723 * 164.50110 * 18 16 15 21 21 H 1.48503 * 109.46877 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47124 * 119.99507 * 20 18 16 23 23 H 1.48501 * 109.46998 * 240.00031 * 20 18 16 24 24 C 1.46923 * 118.73780 * 306.38692 * 15 14 13 25 25 C 1.53038 * 109.45658 * 154.97594 * 12 11 9 26 26 C 1.52995 * 117.50247 * 80.65790 * 6 4 3 27 27 C 1.53002 * 117.49766 * 149.31813 * 6 4 3 28 28 H 1.08997 * 109.47533 * 299.99594 * 1 2 3 29 29 H 1.08998 * 109.47233 * 60.00285 * 1 2 3 30 30 H 1.09006 * 109.47068 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47533 * 240.00406 * 2 1 3 32 32 H 1.08998 * 109.47233 * 119.99715 * 2 1 3 33 33 H 1.09008 * 109.47333 * 180.62589 * 7 6 4 34 34 H 1.09002 * 109.47530 * 60.62338 * 7 6 4 35 35 H 0.97001 * 119.99586 * 355.51670 * 8 7 6 36 36 H 0.97001 * 119.99710 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.45783 * 35.00121 * 12 11 9 38 38 H 1.09011 * 109.49632 * 298.56654 * 13 12 11 39 39 H 1.09000 * 109.49924 * 58.66160 * 13 12 11 40 40 H 1.08994 * 109.59886 * 294.86867 * 14 13 12 41 41 H 1.09003 * 109.70403 * 174.50335 * 14 13 12 42 42 H 0.96999 * 120.00480 * 180.02562 * 19 18 16 43 43 H 1.09003 * 109.58836 * 293.82122 * 24 15 14 44 44 H 1.08997 * 109.70733 * 173.46099 * 24 15 14 45 45 H 1.09004 * 109.49864 * 301.33618 * 25 12 11 46 46 H 1.09006 * 109.50171 * 61.43621 * 25 12 11 47 47 H 1.09008 * 117.50228 * 215.00423 * 26 6 4 48 48 H 1.09001 * 117.49744 * 0.02562 * 26 6 4 49 49 H 1.08992 * 117.50194 * 359.97294 * 27 6 4 50 50 H 1.08999 * 117.49752 * 144.97674 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.6333 3.7708 -1.2505 8 7 4.1759 3.0880 -2.4277 9 6 3.9573 3.5909 -3.6588 10 8 3.3142 4.6142 -3.7922 11 7 4.4517 2.9597 -4.7422 12 6 4.2146 3.5067 -6.0804 13 6 2.8585 3.0206 -6.5970 14 6 2.5984 3.6225 -7.9814 15 7 3.7306 3.2957 -8.8592 16 6 3.5234 2.6836 -10.0665 17 1 2.7438 1.9435 -10.1700 18 6 4.3156 3.0145 -11.1573 19 7 5.0474 4.1081 -11.1316 20 14 4.3429 1.9076 -12.6618 21 1 3.4389 0.7502 -12.4412 22 1 3.8847 2.6738 -13.8485 23 1 5.7263 1.4190 -12.8917 24 6 5.0892 3.6376 -8.4166 25 6 5.3212 3.0359 -7.0270 26 6 3.9877 3.6738 1.3395 27 6 5.2695 3.1438 0.6920 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.1020 4.7499 -1.1504 34 1 2.5564 3.8937 -1.3659 35 1 4.6889 2.2717 -2.3213 36 1 4.9646 2.1432 -4.6358 37 1 4.2161 4.5956 -6.0330 38 1 2.8649 1.9329 -6.6682 39 1 2.0732 3.3361 -5.9100 40 1 2.5019 4.7049 -7.8973 41 1 1.6814 3.2050 -8.3973 42 1 5.6007 4.3395 -11.8940 43 1 5.1958 4.7213 -8.3679 44 1 5.8176 3.2299 -9.1175 45 1 6.2890 3.3623 -6.6461 46 1 5.3042 1.9481 -7.0942 47 1 3.8271 4.7519 1.3298 48 1 3.6156 3.1507 2.2205 49 1 5.7401 2.2725 1.1472 50 1 5.9524 3.8731 0.2562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613730171.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:33 Heat of formation + Delta-G solvation = -97.434688 kcal Electronic energy + Delta-G solvation = -29920.806684 eV Core-core repulsion = 25755.504908 eV Total energy + Delta-G solvation = -4165.301776 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93631 -41.12800 -39.26943 -38.64718 -37.47625 -35.97868 -35.20848 -33.83704 -32.65549 -31.78765 -31.21041 -28.42879 -26.74978 -25.76389 -23.99166 -23.67062 -23.61654 -23.34274 -21.81791 -21.09291 -21.05359 -19.53032 -18.82114 -18.41243 -17.85631 -17.64048 -17.21063 -16.77977 -16.48743 -15.90318 -15.88781 -15.40649 -15.35470 -15.23130 -15.02623 -14.75672 -14.65654 -14.51289 -14.06275 -13.90323 -13.69294 -13.49175 -13.18092 -13.04242 -12.98264 -12.67544 -12.56292 -12.52179 -12.50169 -12.23871 -12.00861 -11.94578 -11.89926 -11.60419 -11.59244 -11.51915 -11.46547 -11.32560 -11.13953 -10.58418 -10.35580 -9.78596 -8.60537 -7.88987 -5.43594 0.96366 1.46271 1.47779 1.48475 1.59561 1.63547 2.14361 2.50486 2.58456 3.20671 3.28276 3.41175 3.52248 3.63438 3.67297 3.85595 3.89951 3.95486 4.01288 4.06646 4.28270 4.34370 4.45837 4.52106 4.59747 4.65346 4.65849 4.70335 4.80688 4.83808 4.86450 4.87350 4.92760 5.01969 5.06888 5.10304 5.13719 5.16396 5.29610 5.37057 5.38003 5.41110 5.58299 5.63730 5.66929 5.95083 6.42475 6.59409 7.04376 7.15053 7.56336 7.81185 8.39809 9.17206 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002193 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.752814 B =12765.754377 C =13551.736407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.501 3.499 5 O -0.528 6.528 6 C -0.173 4.173 7 C 0.187 3.813 8 N -0.739 5.739 9 C 0.703 3.297 10 O -0.630 6.630 11 N -0.728 5.728 12 C 0.182 3.818 13 C -0.124 4.124 14 C 0.146 3.854 15 N -0.607 5.607 16 C -0.270 4.270 17 H 0.062 0.938 18 C -0.041 4.041 19 N -0.931 5.931 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.184 3.816 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.131 4.131 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.405 0.595 36 H 0.408 0.592 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.006 0.994 41 H 0.056 0.944 42 H 0.252 0.748 43 H -0.002 1.002 44 H 0.050 0.950 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.135 0.865 48 H 0.114 0.886 49 H 0.105 0.895 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 -6.193 29.705 30.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.274 6.274 4 C 0.345 3.655 5 O -0.417 6.417 6 C -0.175 4.175 7 C 0.063 3.937 8 N -0.395 5.395 9 C 0.403 3.597 10 O -0.511 6.511 11 N -0.382 5.382 12 C 0.077 3.923 13 C -0.164 4.164 14 C 0.020 3.980 15 N -0.331 5.331 16 C -0.401 4.401 17 H 0.079 0.921 18 C -0.238 4.238 19 N -0.576 5.576 20 Si 0.795 3.205 21 H -0.190 1.190 22 H -0.219 1.219 23 H -0.213 1.213 24 C 0.058 3.942 25 C -0.167 4.167 26 C -0.156 4.156 27 C -0.167 4.167 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.240 0.760 36 H 0.243 0.757 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.024 0.976 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.069 0.931 45 H 0.097 0.903 46 H 0.088 0.912 47 H 0.153 0.847 48 H 0.132 0.868 49 H 0.123 0.877 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.394 -5.515 29.471 30.078 hybrid contribution 0.464 -1.195 -1.218 1.768 sum -1.931 -6.711 28.253 29.103 Atomic orbital electron populations 1.21829 0.90748 1.04359 1.03602 1.23295 0.96961 0.79085 1.02603 1.86536 1.23992 1.33714 1.83153 1.22747 0.80650 0.91030 0.71099 1.90664 1.61089 1.43468 1.46465 1.21164 1.06450 0.91619 0.98263 1.20594 0.99473 0.94178 0.79477 1.45027 1.59614 1.30737 1.04119 1.16047 0.79673 0.82929 0.81042 1.90906 1.46969 1.27103 1.86111 1.45170 1.58522 1.29874 1.04637 1.20493 0.94842 0.97377 0.79637 1.22187 0.96980 1.00642 0.96583 1.20955 0.91114 0.95861 0.90071 1.44247 1.01126 1.69908 1.17778 1.19428 1.18211 1.15288 0.87136 0.92070 1.26029 1.00542 0.97123 1.00074 1.70178 1.31669 1.24203 1.31522 0.85220 0.77480 0.78661 0.79107 1.19005 1.21872 1.21295 1.20450 0.86765 0.95057 0.91946 1.22256 0.97503 1.01404 0.95551 1.23333 0.99076 1.02187 0.91027 1.23315 0.89395 1.03902 1.00132 0.90805 0.92069 0.88179 0.91794 0.90565 0.89166 0.91375 0.76006 0.75674 0.92307 0.91803 0.92453 0.97568 0.92586 0.93905 0.98389 0.93141 0.90349 0.91158 0.84727 0.86815 0.87666 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.82 6.19 71.98 0.45 1.26 16 3 O -0.36 -6.81 10.22 -51.44 -0.53 -7.34 16 4 C 0.50 9.61 6.83 71.24 0.49 10.09 16 5 O -0.53 -12.36 16.43 21.97 0.36 -12.00 16 6 C -0.17 -2.45 2.11 -52.93 -0.11 -2.56 16 7 C 0.19 3.38 5.53 86.38 0.48 3.86 16 8 N -0.74 -15.76 5.40 -478.52 -2.58 -18.34 16 9 C 0.70 20.72 8.53 179.05 1.53 22.25 16 10 O -0.63 -24.07 16.00 -3.99 -0.06 -24.14 16 11 N -0.73 -20.14 5.08 -457.69 -2.33 -22.47 16 12 C 0.18 6.36 2.42 45.02 0.11 6.47 16 13 C -0.12 -4.60 5.65 30.67 0.17 -4.42 16 14 C 0.15 6.54 6.52 86.36 0.56 7.11 16 15 N -0.61 -31.15 2.94 -699.10 -2.06 -33.21 16 16 C -0.27 -15.04 9.49 84.03 0.80 -14.24 16 17 H 0.06 3.35 7.88 -2.91 -0.02 3.32 16 18 C -0.04 -2.30 4.90 84.86 0.42 -1.88 16 19 N -0.93 -55.50 11.74 21.65 0.25 -55.24 16 20 Si 0.97 44.72 29.58 68.60 2.03 46.75 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 24 C 0.18 8.84 5.26 86.36 0.45 9.29 16 25 C -0.13 -4.56 5.55 30.67 0.17 -4.39 16 26 C -0.12 -0.94 9.95 30.62 0.30 -0.63 16 27 C -0.13 -1.27 9.76 30.62 0.30 -0.97 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 33 H 0.09 1.49 8.11 -2.38 -0.02 1.47 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.40 7.33 8.29 -92.71 -0.77 6.56 16 36 H 0.41 8.79 8.62 -92.71 -0.80 7.99 16 37 H 0.06 2.38 7.58 -2.39 -0.02 2.36 16 38 H 0.06 2.29 8.14 -2.38 -0.02 2.28 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.06 2.45 7.93 -2.39 -0.02 2.44 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.05 2.67 6.66 -2.39 -0.02 2.65 16 45 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.07 2.40 8.14 -2.38 -0.02 2.39 16 47 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 48 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.10 1.14 7.99 -2.39 -0.02 1.12 16 50 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.35 411.15 1.32 -73.04 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.62 Total: 22.59 kcal Atomic # 6 Polarization: 23.51 SS G_CDS: 6.85 Total: 30.37 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -6.71 Total: -129.26 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.23 Total: -43.48 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -74.35 1.32 -73.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613730171.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.399 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds