Wall clock time and date at job start Sat Apr 11 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42897 * 109.47267 * 2 1 4 4 C 1.42902 * 113.99990 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47303 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46908 * 64.99815 * 5 4 3 7 7 C 1.42898 * 114.00208 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47480 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47160 * 64.99927 * 8 7 6 10 10 C 1.46502 * 120.00188 * 270.00107 * 9 8 7 11 11 C 1.34774 * 120.00156 * 90.00304 * 9 8 7 12 12 O 1.21608 * 119.99518 * 3.71248 * 11 9 8 13 13 C 1.47423 * 120.00434 * 183.71770 * 11 9 8 14 14 C 1.41292 * 126.41160 * 327.78529 * 13 11 9 15 15 N 1.30456 * 108.02287 * 179.70719 * 14 13 11 16 16 N 1.39938 * 108.89346 * 0.40725 * 15 14 13 17 17 C 1.46501 * 125.75016 * 179.84429 * 16 15 14 18 18 C 1.50694 * 109.47120 * 269.69343 * 17 16 15 19 19 H 1.07998 * 120.00569 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99847 * 179.72471 * 18 17 16 21 21 N 1.31519 * 119.99811 * 0.27976 * 20 18 17 22 22 Si 1.86797 * 120.00383 * 180.27578 * 20 18 17 23 23 H 1.48504 * 109.46930 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47357 * 119.99867 * 22 20 18 25 25 H 1.48504 * 109.47114 * 240.00380 * 22 20 18 26 26 C 1.34254 * 108.49337 * 359.58609 * 16 15 14 27 27 C 1.50702 * 126.29177 * 180.22297 * 26 16 15 28 28 H 1.09004 * 109.47316 * 59.99873 * 1 2 3 29 29 H 1.08996 * 109.47422 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46911 * 300.00231 * 1 2 3 31 31 H 1.08999 * 109.46911 * 239.99769 * 2 1 3 32 32 H 1.09004 * 109.47316 * 120.00127 * 2 1 3 33 33 H 1.09002 * 109.47324 * 60.00162 * 4 3 2 34 34 H 1.09004 * 109.47210 * 300.00109 * 4 3 2 35 35 H 1.08998 * 109.46889 * 305.00446 * 5 4 3 36 36 H 1.08992 * 109.47206 * 184.99886 * 5 4 3 37 37 H 1.08998 * 109.46786 * 60.00119 * 7 6 5 38 38 H 1.08999 * 109.47027 * 300.00428 * 7 6 5 39 39 H 1.09004 * 109.46753 * 305.00033 * 8 7 6 40 40 H 1.08999 * 109.47065 * 185.00330 * 8 7 6 41 41 H 1.08998 * 109.47416 * 275.58254 * 10 9 8 42 42 H 1.08998 * 109.47070 * 35.58443 * 10 9 8 43 43 H 1.09004 * 109.47001 * 155.58033 * 10 9 8 44 44 H 1.08001 * 125.99353 * 359.92928 * 14 13 11 45 45 H 1.09001 * 109.46310 * 149.69375 * 17 16 15 46 46 H 1.09005 * 109.46894 * 29.69854 * 17 16 15 47 47 H 0.97000 * 120.00134 * 179.97438 * 21 20 18 48 48 H 1.08993 * 109.47212 * 89.99602 * 27 26 16 49 49 H 1.09004 * 109.46927 * 209.99769 * 27 26 16 50 50 H 1.08998 * 109.46736 * 329.99552 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 8 3.3986 3.5457 1.2199 7 6 3.7204 4.9343 1.3219 8 6 3.2196 5.4768 2.6619 9 7 3.9490 4.8286 3.7546 10 6 3.4364 3.5890 4.3436 11 6 5.0917 5.3726 4.2180 12 8 5.4817 6.4362 3.7759 13 6 5.8689 4.6783 5.2607 14 6 5.3488 3.8661 6.2933 15 7 6.3502 3.4289 7.0061 16 7 7.5404 3.9406 6.4771 17 6 8.8867 3.6863 6.9959 18 6 9.2394 4.7388 8.0150 19 1 8.5315 5.5190 8.2529 20 6 10.4635 4.7023 8.6484 21 7 11.3255 3.7520 8.3591 22 14 10.8979 6.0025 9.9173 23 1 9.7653 6.9523 10.0605 24 1 11.1638 5.3495 11.2243 25 1 12.1096 6.7392 9.4764 26 6 7.2410 4.6992 5.4107 27 6 8.2225 5.4382 4.5379 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8333 0.9766 -0.8908 34 1 3.8340 0.9763 0.8892 35 1 3.3493 3.4411 -0.8429 36 1 4.9082 3.0253 -0.0912 37 1 3.2425 5.4787 0.5076 38 1 4.8011 5.0623 1.2596 39 1 2.1543 5.2690 2.7627 40 1 3.3852 6.5533 2.7028 41 1 2.6963 3.8284 5.1072 42 1 2.9728 2.9819 3.5661 43 1 4.2587 3.0344 4.7957 44 1 4.3055 3.6430 6.4608 45 1 9.6041 3.7194 6.1760 46 1 8.9156 2.7025 7.4646 47 1 12.1869 3.7265 8.8044 48 1 8.5385 4.7922 3.7189 49 1 7.7475 6.3319 4.1331 50 1 9.0912 5.7251 5.1304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890143631.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:48 Heat of formation + Delta-G solvation = -55.172409 kcal Electronic energy + Delta-G solvation = -29762.644513 eV Core-core repulsion = 25599.175367 eV Total energy + Delta-G solvation = -4163.469146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84503 -39.20835 -38.56878 -37.45622 -35.27442 -33.87283 -32.33599 -32.02898 -31.32835 -30.35482 -28.88485 -27.21489 -26.85465 -26.09342 -23.75295 -23.10491 -22.91100 -22.80576 -21.11314 -19.69789 -18.38245 -17.38316 -17.18610 -16.79983 -16.55773 -16.27443 -15.88509 -15.74979 -15.23778 -15.01273 -14.82144 -14.56429 -14.25062 -13.82839 -13.57178 -13.39923 -13.27461 -12.87344 -12.83456 -12.53437 -12.44031 -12.30571 -12.12842 -12.04747 -11.94690 -11.82803 -11.67983 -11.58740 -11.46717 -11.38439 -11.11009 -10.99126 -10.89982 -10.34544 -10.16845 -9.91720 -9.87463 -9.78271 -9.33304 -8.70475 -8.55651 -8.45475 -7.83376 -6.32581 -4.40096 2.27258 2.84180 3.14242 3.18152 3.26176 3.31971 3.34313 3.46956 3.48301 3.81592 4.25916 4.67487 4.71303 4.86703 4.88994 4.91576 5.01490 5.02380 5.03050 5.13379 5.17173 5.19080 5.23221 5.27905 5.36431 5.44574 5.48160 5.50149 5.58026 5.63753 5.70273 5.77958 5.78291 5.81970 5.98914 6.01287 6.03335 6.47791 6.57216 6.70753 6.82364 6.86962 6.91757 7.04209 7.20732 7.58893 7.66954 7.78980 7.82657 8.42255 8.60166 8.67028 9.26977 10.75537 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.002198 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.711869 B =12736.738936 C =13222.829255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.382 6.382 4 C 0.065 3.935 5 C 0.065 3.935 6 O -0.375 6.375 7 C 0.046 3.954 8 C 0.123 3.877 9 N -0.610 5.610 10 C 0.072 3.928 11 C 0.604 3.396 12 O -0.556 6.556 13 C -0.327 4.327 14 C 0.053 3.947 15 N -0.298 5.298 16 N -0.314 5.314 17 C 0.251 3.749 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.158 3.842 27 C -0.101 4.101 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.181 0.819 45 H 0.055 0.945 46 H 0.057 0.943 47 H 0.268 0.732 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.585 -4.893 -18.183 25.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.301 6.301 4 C -0.012 4.012 5 C -0.012 4.012 6 O -0.294 6.294 7 C -0.032 4.032 8 C 0.000 4.000 9 N -0.343 5.343 10 C -0.071 4.071 11 C 0.395 3.605 12 O -0.435 6.435 13 C -0.343 4.343 14 C -0.133 4.133 15 N -0.118 5.118 16 N -0.091 5.091 17 C 0.134 3.866 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.021 3.979 27 C -0.159 4.159 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.198 0.802 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.091 0.909 49 H 0.113 0.887 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.914 -5.130 -17.115 24.604 hybrid contribution 0.358 0.797 -0.121 0.882 sum -16.556 -4.333 -17.236 24.289 Atomic orbital electron populations 1.21729 0.93735 1.02147 1.03180 1.22455 0.95687 0.83939 0.99976 1.87955 1.20605 1.26144 1.95398 1.22513 0.82046 0.95745 1.00866 1.22466 0.98341 0.92437 0.87941 1.87940 1.80809 1.23091 1.37567 1.23012 0.99997 0.82170 0.97987 1.21395 0.96229 0.98155 0.84214 1.47497 1.24726 1.26162 1.35957 1.22165 1.00015 0.86224 0.98686 1.17456 0.79213 0.83511 0.80272 1.90678 1.69487 1.22091 1.61249 1.19619 0.92599 1.16168 1.05884 1.23986 0.98809 0.96836 0.93701 1.77149 0.90266 1.22483 1.21897 1.49333 1.08172 1.32724 1.18841 1.19830 0.71596 0.99346 0.95804 1.21315 1.01577 1.11873 1.22947 0.91553 1.24931 0.95659 0.96233 0.96896 1.69926 1.08063 1.32353 1.42435 0.86272 0.78529 0.81055 0.80703 1.19476 1.20587 1.20561 1.21360 0.94128 0.92710 0.89711 1.20608 0.97662 1.00043 0.97606 0.92003 0.91197 0.91680 0.93675 0.93290 0.92073 0.92275 0.92705 0.91911 0.92654 0.92800 0.89967 0.88351 0.93195 0.90744 0.89546 0.80240 0.92688 0.92545 0.92202 0.90930 0.88667 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.15 0.38 -0.57 16 2 C 0.06 0.42 6.66 37.15 0.25 0.67 16 3 O -0.38 -3.86 10.31 -40.08 -0.41 -4.27 16 4 C 0.06 0.55 6.32 37.16 0.23 0.79 16 5 C 0.06 0.59 6.32 37.16 0.23 0.83 16 6 O -0.37 -4.26 9.05 -40.08 -0.36 -4.62 16 7 C 0.05 0.49 6.28 37.16 0.23 0.73 16 8 C 0.12 1.39 5.87 -4.05 -0.02 1.37 16 9 N -0.61 -8.37 2.84 -182.85 -0.52 -8.88 16 10 C 0.07 0.83 8.94 59.85 0.54 1.37 16 11 C 0.60 10.51 7.52 -12.52 -0.09 10.41 16 12 O -0.56 -10.87 14.91 5.27 0.08 -10.79 16 13 C -0.33 -6.20 5.53 -105.07 -0.58 -6.78 16 14 C 0.05 0.95 9.57 -16.98 -0.16 0.79 16 15 N -0.30 -6.52 12.50 30.86 0.39 -6.13 16 16 N -0.31 -7.18 3.56 -57.77 -0.21 -7.39 16 17 C 0.25 6.30 5.78 -5.20 -0.03 6.27 16 18 C -0.54 -14.67 9.39 -34.44 -0.32 -14.99 16 19 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 20 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 22 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.16 3.27 7.00 -81.60 -0.57 2.69 16 27 C -0.10 -1.83 9.66 36.01 0.35 -1.49 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 40 H 0.10 1.15 7.37 -51.93 -0.38 0.77 16 41 H 0.05 0.49 7.85 -51.93 -0.41 0.08 16 42 H 0.07 0.82 7.03 -51.93 -0.37 0.45 16 43 H 0.09 1.10 4.75 -51.93 -0.25 0.85 16 44 H 0.18 2.52 6.14 -52.49 -0.32 2.20 16 45 H 0.06 1.36 7.62 -51.93 -0.40 0.97 16 46 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 49 H 0.09 1.71 6.51 -51.93 -0.34 1.37 16 50 H 0.09 1.63 7.70 -51.93 -0.40 1.23 16 LS Contribution 412.89 15.07 6.22 6.22 Total: -1.00 -32.42 412.89 -7.08 -39.50 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.32 Total: 0.53 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 0.33 Total: 3.78 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.40 Total: -46.37 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.70 Total: -19.68 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.42 -7.08 -39.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890143631.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.670 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds