Wall clock time and date at job start Sat Apr 11 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42897 * 109.47267 * 2 1 4 4 C 1.42902 * 113.99990 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47303 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46908 * 64.99815 * 5 4 3 7 7 C 1.42898 * 114.00208 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47480 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.47160 * 64.99927 * 8 7 6 10 10 C 1.46502 * 120.00188 * 270.00107 * 9 8 7 11 11 C 1.34774 * 120.00156 * 90.00304 * 9 8 7 12 12 O 1.21608 * 119.99518 * 3.71248 * 11 9 8 13 13 C 1.47423 * 120.00434 * 183.71770 * 11 9 8 14 14 C 1.41292 * 126.41160 * 327.78529 * 13 11 9 15 15 N 1.30456 * 108.02287 * 179.70719 * 14 13 11 16 16 N 1.39938 * 108.89346 * 0.40725 * 15 14 13 17 17 C 1.46501 * 125.75016 * 179.84429 * 16 15 14 18 18 C 1.50694 * 109.47120 * 269.69343 * 17 16 15 19 19 H 1.07998 * 120.00569 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99847 * 179.72471 * 18 17 16 21 21 N 1.31519 * 119.99811 * 0.27976 * 20 18 17 22 22 Si 1.86797 * 120.00383 * 180.27578 * 20 18 17 23 23 H 1.48504 * 109.46930 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47357 * 119.99867 * 22 20 18 25 25 H 1.48504 * 109.47114 * 240.00380 * 22 20 18 26 26 C 1.34254 * 108.49337 * 359.58609 * 16 15 14 27 27 C 1.50702 * 126.29177 * 180.22297 * 26 16 15 28 28 H 1.09004 * 109.47316 * 59.99873 * 1 2 3 29 29 H 1.08996 * 109.47422 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46911 * 300.00231 * 1 2 3 31 31 H 1.08999 * 109.46911 * 239.99769 * 2 1 3 32 32 H 1.09004 * 109.47316 * 120.00127 * 2 1 3 33 33 H 1.09002 * 109.47324 * 60.00162 * 4 3 2 34 34 H 1.09004 * 109.47210 * 300.00109 * 4 3 2 35 35 H 1.08998 * 109.46889 * 305.00446 * 5 4 3 36 36 H 1.08992 * 109.47206 * 184.99886 * 5 4 3 37 37 H 1.08998 * 109.46786 * 60.00119 * 7 6 5 38 38 H 1.08999 * 109.47027 * 300.00428 * 7 6 5 39 39 H 1.09004 * 109.46753 * 305.00033 * 8 7 6 40 40 H 1.08999 * 109.47065 * 185.00330 * 8 7 6 41 41 H 1.08998 * 109.47416 * 275.58254 * 10 9 8 42 42 H 1.08998 * 109.47070 * 35.58443 * 10 9 8 43 43 H 1.09004 * 109.47001 * 155.58033 * 10 9 8 44 44 H 1.08001 * 125.99353 * 359.92928 * 14 13 11 45 45 H 1.09001 * 109.46310 * 149.69375 * 17 16 15 46 46 H 1.09005 * 109.46894 * 29.69854 * 17 16 15 47 47 H 0.97000 * 120.00134 * 179.97438 * 21 20 18 48 48 H 1.08993 * 109.47212 * 89.99602 * 27 26 16 49 49 H 1.09004 * 109.46927 * 209.99769 * 27 26 16 50 50 H 1.08998 * 109.46736 * 329.99552 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8255 2.9383 -0.0012 6 8 3.3986 3.5457 1.2199 7 6 3.7204 4.9343 1.3219 8 6 3.2196 5.4768 2.6619 9 7 3.9490 4.8286 3.7546 10 6 3.4364 3.5890 4.3436 11 6 5.0917 5.3726 4.2180 12 8 5.4817 6.4362 3.7759 13 6 5.8689 4.6783 5.2607 14 6 5.3488 3.8661 6.2933 15 7 6.3502 3.4289 7.0061 16 7 7.5404 3.9406 6.4771 17 6 8.8867 3.6863 6.9959 18 6 9.2394 4.7388 8.0150 19 1 8.5315 5.5190 8.2529 20 6 10.4635 4.7023 8.6484 21 7 11.3255 3.7520 8.3591 22 14 10.8979 6.0025 9.9173 23 1 9.7653 6.9523 10.0605 24 1 11.1638 5.3495 11.2243 25 1 12.1096 6.7392 9.4764 26 6 7.2410 4.6992 5.4107 27 6 8.2225 5.4382 4.5379 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.8333 0.9766 -0.8908 34 1 3.8340 0.9763 0.8892 35 1 3.3493 3.4411 -0.8429 36 1 4.9082 3.0253 -0.0912 37 1 3.2425 5.4787 0.5076 38 1 4.8011 5.0623 1.2596 39 1 2.1543 5.2690 2.7627 40 1 3.3852 6.5533 2.7028 41 1 2.6963 3.8284 5.1072 42 1 2.9728 2.9819 3.5661 43 1 4.2587 3.0344 4.7957 44 1 4.3055 3.6430 6.4608 45 1 9.6041 3.7194 6.1760 46 1 8.9156 2.7025 7.4646 47 1 12.1869 3.7265 8.8044 48 1 8.5385 4.7922 3.7189 49 1 7.7475 6.3319 4.1331 50 1 9.0912 5.7251 5.1304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890143631.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:48 Heat of formation + Delta-G solvation = -75.832165 kcal Electronic energy + Delta-G solvation = -29763.540387 eV Core-core repulsion = 25599.175367 eV Total energy + Delta-G solvation = -4164.365021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38711 -40.41432 -39.36311 -38.27373 -36.46503 -35.77846 -33.88653 -33.01979 -32.66925 -31.36027 -29.74813 -28.89001 -28.30416 -27.25883 -25.48828 -24.18731 -23.63885 -23.48708 -22.50145 -21.17004 -19.81086 -18.86137 -18.33048 -17.95668 -17.68856 -17.27154 -16.99908 -16.68154 -16.52506 -16.32610 -16.04048 -15.92557 -15.52343 -15.10165 -14.69993 -14.46030 -14.32512 -14.27837 -13.99804 -13.73776 -13.67210 -13.53615 -13.45002 -13.23912 -13.11713 -12.96181 -12.86616 -12.74594 -12.65268 -12.52269 -12.33743 -12.25520 -12.09021 -11.83143 -11.77201 -11.74527 -10.81911 -10.76999 -10.55591 -10.50909 -10.21603 -9.65754 -9.36281 -8.38769 -6.54902 0.72883 1.33504 1.35214 1.38297 1.49273 1.68477 2.10952 2.32037 2.40358 2.72367 2.77656 2.93024 3.70280 3.74441 4.02702 4.04481 4.16667 4.17007 4.19559 4.23207 4.28136 4.36798 4.39430 4.48405 4.49339 4.52224 4.52942 4.56588 4.60664 4.71167 4.76398 4.78054 4.81629 4.90938 4.93354 4.94609 5.03638 5.06711 5.08482 5.16259 5.29778 5.48805 5.60624 5.72136 5.74704 6.06399 6.19516 6.32570 6.46852 6.54844 6.84108 7.16244 7.28958 8.69102 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.002198 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.711869 B =12736.738936 C =13222.829255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.064 3.936 5 C 0.060 3.940 6 O -0.391 6.391 7 C 0.051 3.949 8 C 0.120 3.880 9 N -0.601 5.601 10 C 0.071 3.929 11 C 0.603 3.397 12 O -0.583 6.583 13 C -0.327 4.327 14 C 0.074 3.926 15 N -0.336 5.336 16 N -0.337 5.337 17 C 0.268 3.732 18 C -0.555 4.555 19 H 0.049 0.951 20 C 0.024 3.976 21 N -0.915 5.915 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.272 1.272 25 H -0.267 1.267 26 C 0.140 3.860 27 C -0.093 4.093 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.222 0.778 45 H 0.051 0.949 46 H 0.032 0.968 47 H 0.274 0.726 48 H 0.093 0.907 49 H 0.097 0.903 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.275 -4.802 -18.987 27.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.325 6.325 4 C -0.012 4.012 5 C -0.016 4.016 6 O -0.310 6.310 7 C -0.027 4.027 8 C -0.002 4.002 9 N -0.333 5.333 10 C -0.071 4.071 11 C 0.393 3.607 12 O -0.464 6.464 13 C -0.343 4.343 14 C -0.112 4.112 15 N -0.156 5.156 16 N -0.115 5.115 17 C 0.150 3.850 18 C -0.594 4.594 19 H 0.067 0.933 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.198 1.198 25 H -0.192 1.192 26 C 0.004 3.996 27 C -0.151 4.151 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.054 0.946 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.239 0.761 45 H 0.069 0.931 46 H 0.050 0.950 47 H 0.084 0.916 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.639 -5.064 -17.947 26.366 hybrid contribution 0.741 0.706 0.021 1.024 sum -17.897 -4.358 -17.926 25.703 Atomic orbital electron populations 1.21746 0.93070 1.03197 1.02604 1.22630 0.96307 0.83072 1.00673 1.87919 1.21307 1.27671 1.95560 1.22583 0.81644 0.95454 1.01555 1.22619 0.98834 0.92779 0.87384 1.87905 1.81007 1.23300 1.38812 1.22936 0.99028 0.82420 0.98316 1.21603 0.97174 0.97822 0.83632 1.47547 1.23460 1.26365 1.35883 1.22278 0.99998 0.85243 0.99608 1.17274 0.80133 0.83217 0.80062 1.90664 1.70499 1.23247 1.62032 1.19914 0.92163 1.15770 1.06417 1.24640 0.99810 0.94777 0.91970 1.77100 0.90682 1.24278 1.23573 1.49081 1.07724 1.34544 1.20109 1.19354 0.73135 0.97482 0.95051 1.21424 1.01736 1.12134 1.24059 0.93274 1.25714 0.95363 0.98118 0.98520 1.69997 1.08495 1.33565 1.43281 0.85311 0.78295 0.78488 0.78426 1.19941 1.19762 1.19234 1.21877 0.95628 0.92621 0.89444 1.20588 0.96643 1.00290 0.97604 0.92197 0.89374 0.92580 0.92347 0.93189 0.89965 0.92972 0.91899 0.91304 0.90437 0.94643 0.87544 0.88780 0.90571 0.89805 0.90783 0.76149 0.93113 0.94974 0.91632 0.88849 0.88460 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.28 71.98 0.74 -0.93 16 2 C 0.05 0.66 6.66 71.98 0.48 1.14 16 3 O -0.40 -7.57 10.31 -144.35 -1.49 -9.06 16 4 C 0.06 1.00 6.32 71.98 0.45 1.45 16 5 C 0.06 1.00 6.32 71.98 0.45 1.45 16 6 O -0.39 -8.15 9.05 -144.35 -1.31 -9.46 16 7 C 0.05 0.99 6.28 71.98 0.45 1.44 16 8 C 0.12 2.44 5.87 86.38 0.51 2.95 16 9 N -0.60 -15.23 2.84 -850.68 -2.41 -17.64 16 10 C 0.07 1.44 8.94 127.77 1.14 2.58 16 11 C 0.60 20.30 7.52 86.66 0.65 20.95 16 12 O -0.58 -22.45 14.91 -4.06 -0.06 -22.52 16 13 C -0.33 -12.22 5.53 -20.15 -0.11 -12.33 16 14 C 0.07 2.60 9.57 85.65 0.82 3.42 16 15 N -0.34 -14.84 12.50 -56.27 -0.70 -15.54 16 16 N -0.34 -15.85 3.56 -336.70 -1.20 -17.05 16 17 C 0.27 13.99 5.78 85.63 0.50 14.49 16 18 C -0.56 -31.09 9.39 25.60 0.24 -30.85 16 19 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 20 C 0.02 1.32 5.46 84.65 0.46 1.79 16 21 N -0.92 -51.36 13.29 21.45 0.28 -51.08 16 22 Si 0.97 43.27 29.54 68.60 2.03 45.30 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 26 C 0.14 5.86 7.00 42.14 0.29 6.16 16 27 C -0.09 -3.44 9.66 71.24 0.69 -2.75 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 1.68 8.07 -2.38 -0.02 1.66 16 40 H 0.09 2.04 7.37 -2.39 -0.02 2.02 16 41 H 0.08 1.19 7.85 -2.39 -0.02 1.18 16 42 H 0.08 1.60 7.03 -2.39 -0.02 1.59 16 43 H 0.07 1.71 4.75 -2.38 -0.01 1.70 16 44 H 0.22 5.58 6.14 -2.91 -0.02 5.57 16 45 H 0.05 2.63 7.62 -2.39 -0.02 2.61 16 46 H 0.03 1.80 8.14 -2.38 -0.02 1.78 16 47 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 49 H 0.10 3.53 6.51 -2.39 -0.02 3.52 16 50 H 0.07 2.84 7.70 -2.39 -0.02 2.82 16 Total: -1.00 -70.60 412.89 3.83 -66.77 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.92 Total: 19.31 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 7.77 Total: 10.96 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -4.03 Total: -101.31 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -2.86 Total: -41.03 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.60 3.83 -66.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890143631.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.063 kcal (2) G-P(sol) polarization free energy of solvation -70.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds