Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47081 * 2 1 4 4 C 1.34230 * 117.00036 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99808 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00089 * 180.02562 * 4 3 2 7 7 H 1.08997 * 110.88443 * 59.30351 * 6 4 3 8 8 C 1.55159 * 111.03525 * 183.20535 * 6 4 3 9 9 C 1.54328 * 102.93755 * 153.59212 * 8 6 4 10 10 N 1.47018 * 107.27033 * 337.80645 * 9 8 6 11 11 C 1.34778 * 125.64382 * 178.97812 * 10 9 8 12 12 O 1.21588 * 119.99725 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00211 * 359.96143 * 11 10 9 14 14 C 1.46502 * 119.99960 * 179.97438 * 13 11 10 15 15 C 1.53032 * 109.46159 * 275.02384 * 14 13 11 16 16 C 1.53194 * 109.31496 * 178.60049 * 15 14 13 17 17 N 1.46926 * 108.76336 * 54.65597 * 16 15 14 18 18 C 1.36936 * 120.62944 * 126.40364 * 17 16 15 19 19 H 1.07999 * 120.00449 * 331.80922 * 18 17 16 20 20 C 1.38817 * 119.99865 * 151.81135 * 18 17 16 21 21 N 1.31620 * 119.99810 * 343.08048 * 20 18 17 22 22 Si 1.86798 * 120.00086 * 163.08034 * 20 18 17 23 23 H 1.48495 * 109.47058 * 90.00003 * 22 20 18 24 24 H 1.48497 * 109.47135 * 210.00152 * 22 20 18 25 25 H 1.48503 * 109.47033 * 330.00080 * 22 20 18 26 26 C 1.46927 * 118.73962 * 306.38546 * 17 16 15 27 27 C 1.53044 * 109.45912 * 154.96895 * 14 13 11 28 28 C 1.47422 * 108.70971 * 358.94048 * 10 9 8 29 29 H 1.08997 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46945 * 299.99842 * 1 2 3 31 31 H 1.09004 * 109.46828 * 59.99980 * 1 2 3 32 32 H 1.08999 * 109.46945 * 240.00158 * 2 1 3 33 33 H 1.09004 * 109.46828 * 120.00020 * 2 1 3 34 34 H 1.08996 * 110.72008 * 271.95497 * 8 6 4 35 35 H 1.08999 * 110.71858 * 35.23232 * 8 6 4 36 36 H 1.09005 * 109.87826 * 218.39231 * 9 8 6 37 37 H 1.08993 * 110.00963 * 97.30047 * 9 8 6 38 38 H 0.96993 * 119.99830 * 359.97438 * 13 11 10 39 39 H 1.09005 * 109.45949 * 34.99929 * 14 13 11 40 40 H 1.09004 * 109.49867 * 298.57045 * 15 14 13 41 41 H 1.09007 * 109.49965 * 58.66272 * 15 14 13 42 42 H 1.08998 * 109.59903 * 294.86937 * 16 15 14 43 43 H 1.09004 * 109.70363 * 174.50212 * 16 15 14 44 44 H 0.97003 * 119.99585 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58586 * 293.81837 * 26 17 16 46 46 H 1.08999 * 109.58814 * 173.39140 * 26 17 16 47 47 H 1.09001 * 109.49885 * 301.34108 * 27 14 13 48 48 H 1.08996 * 109.49586 * 61.40168 * 27 14 13 49 49 H 1.09003 * 110.36863 * 265.29368 * 28 10 9 50 50 H 1.08996 * 110.45947 * 143.00809 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.5886 3.4949 0.8769 8 6 5.4698 2.8995 -0.0793 9 6 5.8149 4.2519 -0.7377 10 7 4.6173 4.7033 -1.4612 11 6 4.5052 5.8543 -2.1534 12 8 3.4620 6.1262 -2.7158 13 7 5.5491 6.7040 -2.2219 14 6 5.4273 7.9548 -2.9748 15 6 5.7315 7.6928 -4.4515 16 6 5.5692 8.9954 -5.2412 17 7 6.4124 10.0293 -4.6259 18 6 7.3182 10.7292 -5.3775 19 1 7.7567 10.2766 -6.2546 20 6 7.6729 12.0205 -5.0120 21 7 6.9219 12.6952 -4.1676 22 14 9.2161 12.8007 -5.7187 23 1 8.8784 13.5153 -6.9758 24 1 9.7778 13.7635 -4.7375 25 1 10.2190 11.7434 -6.0044 26 6 6.2651 10.2983 -3.1890 27 6 6.4193 8.9810 -2.4224 28 6 3.5598 3.6882 -1.3049 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.9062 2.8332 0.9173 35 1 5.8033 2.0705 -0.7035 36 1 6.6430 4.1242 -1.4349 37 1 6.0831 4.9811 0.0267 38 1 6.3810 6.4873 -1.7727 39 1 4.4127 8.3409 -2.8759 40 1 6.7545 7.3303 -4.5535 41 1 5.0397 6.9444 -4.8383 42 1 4.5263 9.3112 -5.2151 43 1 5.8780 8.8394 -6.2749 44 1 7.1696 13.5978 -3.9125 45 1 5.2789 10.7204 -2.9956 46 1 7.0347 11.0002 -2.8679 47 1 6.2171 9.1498 -1.3647 48 1 7.4356 8.6061 -2.5432 49 1 3.5652 3.0013 -2.1512 50 1 2.5844 4.1655 -1.2108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917313756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -93.340733 kcal Electronic energy + Delta-G solvation = -29767.854148 eV Core-core repulsion = 25602.729899 eV Total energy + Delta-G solvation = -4165.124249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20071 -40.14072 -38.24425 -37.22426 -36.70688 -34.39494 -32.74010 -32.13032 -31.50451 -30.07041 -29.66452 -29.17829 -25.53450 -24.53985 -23.69378 -22.62997 -22.20940 -21.76770 -20.71290 -19.86851 -19.34977 -18.31888 -18.10368 -17.27185 -16.84378 -16.69549 -15.97508 -15.59742 -15.04468 -14.86329 -14.45862 -14.31940 -13.91742 -13.80319 -13.70752 -13.53172 -13.31074 -13.19227 -13.10277 -12.91727 -12.51580 -12.40095 -12.31593 -12.10865 -12.08303 -11.75748 -11.43378 -11.37085 -11.10665 -10.98870 -10.89393 -10.83522 -10.69704 -10.48700 -10.25899 -10.05288 -10.01508 -9.74018 -9.52671 -8.94434 -8.55907 -8.41769 -6.66576 -5.78558 -3.20345 1.69028 2.09717 2.62865 3.29611 3.37894 3.44922 3.47183 3.76203 3.99052 4.16339 4.30431 4.46494 4.50549 4.50734 4.60215 4.75202 4.79638 4.80877 5.20055 5.23332 5.31669 5.34928 5.35559 5.39111 5.44555 5.47974 5.52900 5.53256 5.62960 5.64007 5.91206 5.95548 5.99676 6.10985 6.30817 6.37107 6.52923 6.60315 6.62562 6.82547 6.92817 7.00152 7.10195 7.27936 7.33603 7.62923 7.80436 8.04887 8.45927 8.70222 9.22053 9.85388 10.42647 11.30443 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032591 B = 0.001872 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.934295 B =14950.580327 C =15300.683767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.478 3.522 5 O -0.503 6.503 6 C -0.101 4.101 7 H 0.125 0.875 8 C -0.112 4.112 9 C 0.099 3.901 10 N -0.642 5.642 11 C 0.722 3.278 12 O -0.585 6.585 13 N -0.735 5.735 14 C 0.168 3.832 15 C -0.139 4.139 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.175 3.825 27 C -0.146 4.146 28 C 0.143 3.857 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.391 0.609 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.056 0.944 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.092 0.908 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 -24.273 12.830 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.270 6.270 4 C 0.320 3.680 5 O -0.390 6.390 6 C -0.121 4.121 7 H 0.143 0.857 8 C -0.150 4.150 9 C -0.025 4.025 10 N -0.383 5.383 11 C 0.424 3.576 12 O -0.462 6.462 13 N -0.388 5.388 14 C 0.065 3.935 15 C -0.180 4.180 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.381 4.381 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.048 3.952 27 C -0.186 4.186 28 C 0.019 3.981 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.224 0.776 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.040 0.960 46 H 0.110 0.890 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.548 -24.090 12.387 28.120 hybrid contribution 1.260 0.070 0.006 1.262 sum -6.289 -24.020 12.393 27.751 Atomic orbital electron populations 1.21823 0.92364 1.03100 1.03824 1.23084 0.95618 0.79847 1.02689 1.86535 1.24159 1.32719 1.83624 1.23203 0.80745 0.91874 0.72189 1.90683 1.60491 1.42815 1.45028 1.22274 0.97204 0.90556 1.02071 0.85729 1.22609 0.91860 0.97559 1.02934 1.22036 0.88813 0.95595 0.96027 1.47519 1.14670 1.20225 1.55850 1.15481 0.84391 0.78691 0.79043 1.90938 1.28723 1.75739 1.50797 1.45555 1.14370 1.22100 1.56759 1.20947 1.00765 0.81209 0.90624 1.22394 1.00725 0.99618 0.95245 1.20879 0.94023 0.87674 0.95370 1.44093 1.42285 1.41153 1.04009 1.19177 1.15641 0.94185 1.09090 0.91696 1.25052 0.99101 0.95657 0.99889 1.70027 1.36740 1.10690 1.37317 0.86307 0.83338 0.78914 0.78276 1.21400 1.21587 1.20537 1.20744 1.00609 0.91207 0.82624 1.22546 0.98099 0.98660 0.99271 1.21776 0.92637 0.89542 0.94108 0.90134 0.91358 0.91203 0.91052 0.91141 0.88938 0.88935 0.90897 0.90986 0.77553 0.89991 0.92462 0.92707 0.96140 0.92592 0.93623 0.96046 0.89030 0.92771 0.92243 0.91335 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.29 37.16 0.38 -0.31 16 2 C 0.06 0.40 6.19 37.16 0.23 0.63 16 3 O -0.35 -2.98 10.22 -39.26 -0.40 -3.38 16 4 C 0.48 4.24 7.27 36.01 0.26 4.50 16 5 O -0.50 -5.56 15.50 -18.75 -0.29 -5.86 16 6 C -0.10 -0.75 3.54 -89.62 -0.32 -1.06 16 7 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 8 C -0.11 -0.73 6.06 -24.89 -0.15 -0.89 16 9 C 0.10 0.76 6.15 -3.06 -0.02 0.74 16 10 N -0.64 -7.29 3.33 -176.24 -0.59 -7.87 16 11 C 0.72 11.13 8.45 -86.92 -0.73 10.39 16 12 O -0.58 -11.45 16.26 5.29 0.09 -11.36 16 13 N -0.73 -10.63 5.04 -58.63 -0.30 -10.93 16 14 C 0.17 2.97 2.42 -67.89 -0.16 2.81 16 15 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 16 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 17 N -0.59 -14.83 2.99 -172.32 -0.52 -15.34 16 18 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 19 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 20 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 21 N -0.90 -26.01 11.20 55.49 0.62 -25.39 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 27 C -0.15 -2.66 5.55 -26.61 -0.15 -2.80 16 28 C 0.14 1.41 6.36 -2.53 -0.02 1.39 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.69 7.44 -51.93 -0.39 0.30 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.39 4.59 7.59 -40.82 -0.31 4.29 16 39 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 50 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -33.73 400.66 -10.01 -43.74 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.54 Total: 1.03 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -1.10 Total: 12.84 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.78 Total: -59.53 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.61 Total: -20.60 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.73 -10.01 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917313756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.597 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds