Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47081 * 2 1 4 4 C 1.34230 * 117.00036 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99808 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00089 * 180.02562 * 4 3 2 7 7 H 1.08997 * 110.88443 * 59.30351 * 6 4 3 8 8 C 1.55159 * 111.03525 * 183.20535 * 6 4 3 9 9 C 1.54328 * 102.93755 * 153.59212 * 8 6 4 10 10 N 1.47018 * 107.27033 * 337.80645 * 9 8 6 11 11 C 1.34778 * 125.64382 * 178.97812 * 10 9 8 12 12 O 1.21588 * 119.99725 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00211 * 359.96143 * 11 10 9 14 14 C 1.46502 * 119.99960 * 179.97438 * 13 11 10 15 15 C 1.53032 * 109.46159 * 275.02384 * 14 13 11 16 16 C 1.53194 * 109.31496 * 178.60049 * 15 14 13 17 17 N 1.46926 * 108.76336 * 54.65597 * 16 15 14 18 18 C 1.36936 * 120.62944 * 126.40364 * 17 16 15 19 19 H 1.07999 * 120.00449 * 331.80922 * 18 17 16 20 20 C 1.38817 * 119.99865 * 151.81135 * 18 17 16 21 21 N 1.31620 * 119.99810 * 343.08048 * 20 18 17 22 22 Si 1.86798 * 120.00086 * 163.08034 * 20 18 17 23 23 H 1.48495 * 109.47058 * 90.00003 * 22 20 18 24 24 H 1.48497 * 109.47135 * 210.00152 * 22 20 18 25 25 H 1.48503 * 109.47033 * 330.00080 * 22 20 18 26 26 C 1.46927 * 118.73962 * 306.38546 * 17 16 15 27 27 C 1.53044 * 109.45912 * 154.96895 * 14 13 11 28 28 C 1.47422 * 108.70971 * 358.94048 * 10 9 8 29 29 H 1.08997 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46945 * 299.99842 * 1 2 3 31 31 H 1.09004 * 109.46828 * 59.99980 * 1 2 3 32 32 H 1.08999 * 109.46945 * 240.00158 * 2 1 3 33 33 H 1.09004 * 109.46828 * 120.00020 * 2 1 3 34 34 H 1.08996 * 110.72008 * 271.95497 * 8 6 4 35 35 H 1.08999 * 110.71858 * 35.23232 * 8 6 4 36 36 H 1.09005 * 109.87826 * 218.39231 * 9 8 6 37 37 H 1.08993 * 110.00963 * 97.30047 * 9 8 6 38 38 H 0.96993 * 119.99830 * 359.97438 * 13 11 10 39 39 H 1.09005 * 109.45949 * 34.99929 * 14 13 11 40 40 H 1.09004 * 109.49867 * 298.57045 * 15 14 13 41 41 H 1.09007 * 109.49965 * 58.66272 * 15 14 13 42 42 H 1.08998 * 109.59903 * 294.86937 * 16 15 14 43 43 H 1.09004 * 109.70363 * 174.50212 * 16 15 14 44 44 H 0.97003 * 119.99585 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58586 * 293.81837 * 26 17 16 46 46 H 1.08999 * 109.58814 * 173.39140 * 26 17 16 47 47 H 1.09001 * 109.49885 * 301.34108 * 27 14 13 48 48 H 1.08996 * 109.49586 * 61.40168 * 27 14 13 49 49 H 1.09003 * 110.36863 * 265.29368 * 28 10 9 50 50 H 1.08996 * 110.45947 * 143.00809 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.5886 3.4949 0.8769 8 6 5.4698 2.8995 -0.0793 9 6 5.8149 4.2519 -0.7377 10 7 4.6173 4.7033 -1.4612 11 6 4.5052 5.8543 -2.1534 12 8 3.4620 6.1262 -2.7158 13 7 5.5491 6.7040 -2.2219 14 6 5.4273 7.9548 -2.9748 15 6 5.7315 7.6928 -4.4515 16 6 5.5692 8.9954 -5.2412 17 7 6.4124 10.0293 -4.6259 18 6 7.3182 10.7292 -5.3775 19 1 7.7567 10.2766 -6.2546 20 6 7.6729 12.0205 -5.0120 21 7 6.9219 12.6952 -4.1676 22 14 9.2161 12.8007 -5.7187 23 1 8.8784 13.5153 -6.9758 24 1 9.7778 13.7635 -4.7375 25 1 10.2190 11.7434 -6.0044 26 6 6.2651 10.2983 -3.1890 27 6 6.4193 8.9810 -2.4224 28 6 3.5598 3.6882 -1.3049 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 5.9062 2.8332 0.9173 35 1 5.8033 2.0705 -0.7035 36 1 6.6430 4.1242 -1.4349 37 1 6.0831 4.9811 0.0267 38 1 6.3810 6.4873 -1.7727 39 1 4.4127 8.3409 -2.8759 40 1 6.7545 7.3303 -4.5535 41 1 5.0397 6.9444 -4.8383 42 1 4.5263 9.3112 -5.2151 43 1 5.8780 8.8394 -6.2749 44 1 7.1696 13.5978 -3.9125 45 1 5.2789 10.7204 -2.9956 46 1 7.0347 11.0002 -2.8679 47 1 6.2171 9.1498 -1.3647 48 1 7.4356 8.6061 -2.5432 49 1 3.5652 3.0013 -2.1512 50 1 2.5844 4.1655 -1.2108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917313756.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -114.154709 kcal Electronic energy + Delta-G solvation = -29768.756710 eV Core-core repulsion = 25602.729899 eV Total energy + Delta-G solvation = -4166.026811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.94495 -41.19939 -39.44472 -38.41442 -37.57412 -35.98690 -34.10260 -33.11340 -32.43375 -31.68495 -30.94130 -30.26220 -27.08311 -25.69067 -24.47744 -23.88425 -23.37026 -23.19895 -21.38163 -21.15038 -20.79737 -19.30917 -18.96624 -18.54576 -17.94998 -17.48845 -17.25667 -16.78296 -16.50747 -15.96069 -15.75341 -15.38865 -15.31008 -15.04661 -14.76398 -14.61843 -14.45653 -14.32709 -14.11910 -13.88792 -13.72283 -13.67949 -13.19087 -12.99550 -12.94747 -12.74648 -12.59030 -12.58008 -12.48916 -12.37733 -12.21071 -12.00823 -11.93403 -11.85998 -11.62137 -11.55341 -11.53847 -11.38588 -11.20817 -10.54377 -10.15879 -9.56782 -8.69101 -7.86501 -5.31905 0.97734 1.39394 1.49597 1.50625 1.60696 1.72861 2.11234 2.53361 2.95144 3.22840 3.30461 3.39867 3.67866 3.72113 3.91246 4.00077 4.04587 4.06436 4.07669 4.13238 4.21574 4.34847 4.35654 4.47609 4.57061 4.66394 4.68060 4.73183 4.81694 4.85036 4.86136 4.90522 4.92149 5.02411 5.07104 5.08487 5.14831 5.17415 5.22466 5.31239 5.42323 5.48532 5.59470 5.66194 5.72268 6.00285 6.40537 6.61318 6.96111 7.16036 7.53921 7.85408 8.38596 9.20700 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.032591 B = 0.001872 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.934295 B =14950.580327 C =15300.683767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.481 3.519 5 O -0.526 6.526 6 C -0.090 4.090 7 H 0.145 0.855 8 C -0.103 4.103 9 C 0.094 3.906 10 N -0.638 5.638 11 C 0.719 3.281 12 O -0.633 6.633 13 N -0.722 5.722 14 C 0.181 3.819 15 C -0.124 4.124 16 C 0.145 3.855 17 N -0.608 5.608 18 C -0.264 4.264 19 H 0.067 0.933 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.269 1.269 26 C 0.179 3.821 27 C -0.126 4.126 28 C 0.140 3.860 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.409 0.591 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.007 0.993 43 H 0.057 0.943 44 H 0.251 0.749 45 H -0.005 1.005 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -26.076 14.125 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.278 6.278 4 C 0.324 3.676 5 O -0.415 6.415 6 C -0.110 4.110 7 H 0.163 0.837 8 C -0.141 4.141 9 C -0.028 4.028 10 N -0.376 5.376 11 C 0.421 3.579 12 O -0.514 6.514 13 N -0.376 5.376 14 C 0.076 3.924 15 C -0.164 4.164 16 C 0.019 3.981 17 N -0.332 5.332 18 C -0.394 4.394 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.194 1.194 26 C 0.052 3.948 27 C -0.166 4.166 28 C 0.016 3.984 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.245 0.755 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.025 0.975 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.013 0.987 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.081 0.919 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.212 -25.963 13.717 30.013 hybrid contribution 0.751 0.559 -0.414 1.023 sum -5.462 -25.404 13.303 29.192 Atomic orbital electron populations 1.21841 0.90860 1.04332 1.03634 1.23306 0.96850 0.79004 1.02798 1.86543 1.24003 1.33937 1.83300 1.23421 0.80719 0.92085 0.71390 1.90674 1.60965 1.43654 1.46253 1.22258 0.97879 0.89549 1.01312 0.83692 1.22609 0.90989 0.96490 1.04012 1.22326 0.87418 0.96583 0.96479 1.47471 1.16398 1.18959 1.54795 1.15580 0.83676 0.79567 0.79118 1.90909 1.30524 1.77060 1.52889 1.45120 1.15115 1.20895 1.56482 1.20522 0.99092 0.82406 0.90395 1.22184 1.01184 0.97554 0.95464 1.20958 0.92738 0.88426 0.96015 1.44346 1.42570 1.41563 1.04714 1.19505 1.15951 0.94579 1.09336 0.91560 1.25814 1.01837 0.96182 1.00642 1.70185 1.38292 1.10805 1.38808 0.85263 0.79889 0.77956 0.77220 1.21437 1.21722 1.19405 1.20577 0.98103 0.93395 0.82700 1.22252 0.98833 0.95833 0.99692 1.21815 0.91945 0.89184 0.95430 0.88208 0.91194 0.91688 0.91304 0.90707 0.86474 0.89763 0.89914 0.88910 0.75473 0.92529 0.91565 0.92559 0.97530 0.92460 0.94008 0.98698 0.91722 0.90368 0.91057 0.91863 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 71.98 0.74 -0.42 16 2 C 0.05 0.65 6.19 71.98 0.45 1.09 16 3 O -0.36 -5.75 10.22 -51.41 -0.53 -6.28 16 4 C 0.48 7.86 7.27 71.24 0.52 8.38 16 5 O -0.53 -10.98 15.50 21.96 0.34 -10.64 16 6 C -0.09 -1.13 3.54 -10.15 -0.04 -1.17 16 7 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 8 C -0.10 -1.04 6.06 31.78 0.19 -0.85 16 9 C 0.09 1.12 6.15 86.73 0.53 1.66 16 10 N -0.64 -13.23 3.33 -829.76 -2.76 -15.99 16 11 C 0.72 21.24 8.45 179.05 1.51 22.75 16 12 O -0.63 -24.83 16.26 -3.99 -0.06 -24.89 16 13 N -0.72 -19.38 5.04 -457.68 -2.31 -21.69 16 14 C 0.18 6.22 2.42 45.02 0.11 6.33 16 15 C -0.12 -4.51 5.65 30.67 0.17 -4.33 16 16 C 0.14 6.37 6.52 86.36 0.56 6.93 16 17 N -0.61 -30.79 2.99 -699.09 -2.09 -32.88 16 18 C -0.26 -14.48 9.58 84.04 0.81 -13.67 16 19 H 0.07 3.55 7.88 -2.91 -0.02 3.53 16 20 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 21 N -0.93 -54.95 11.20 21.65 0.24 -54.71 16 22 Si 0.97 44.37 29.59 68.60 2.03 46.40 16 23 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 26 C 0.18 8.49 5.30 86.36 0.46 8.95 16 27 C -0.13 -4.44 5.55 30.67 0.17 -4.27 16 28 C 0.14 2.59 6.36 86.86 0.55 3.14 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.07 0.83 8.13 -2.38 -0.02 0.81 16 34 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 1.05 7.44 -2.39 -0.02 1.03 16 36 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.41 8.21 7.59 -92.71 -0.70 7.50 16 39 H 0.06 2.28 7.58 -2.38 -0.02 2.26 16 40 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 44 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 45 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 46 H 0.06 3.42 6.06 -2.39 -0.01 3.41 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 49 H 0.06 1.24 8.03 -2.39 -0.02 1.22 16 50 H 0.08 1.71 8.04 -2.39 -0.02 1.69 16 Total: -1.00 -74.51 400.66 2.24 -72.27 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.22 Total: 16.22 kcal Atomic # 6 Polarization: 25.03 SS G_CDS: 7.16 Total: 32.19 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -6.91 Total: -125.27 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.25 Total: -41.81 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -74.51 2.24 -72.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917313756.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.886 kcal (2) G-P(sol) polarization free energy of solvation -74.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds