Wall clock time and date at job start Sat Apr 11 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47092 * 2 1 4 4 C 1.42896 * 113.99932 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.88808 * 26.11805 * 4 3 2 6 6 C 1.55157 * 111.00512 * 149.99897 * 4 3 2 7 7 C 1.54327 * 102.94533 * 153.57679 * 6 4 3 8 8 N 1.47020 * 107.26787 * 337.80582 * 7 6 4 9 9 C 1.34779 * 125.64703 * 178.89473 * 8 7 6 10 10 O 1.21355 * 119.99674 * 180.02562 * 9 8 7 11 11 C 1.49449 * 119.99866 * 0.02562 * 9 8 7 12 12 O 1.21343 * 120.00129 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99866 * 180.02562 * 11 9 8 14 14 C 1.46494 * 120.00182 * 179.97438 * 13 11 9 15 15 C 1.53037 * 109.46428 * 275.07404 * 14 13 11 16 16 C 1.53191 * 109.31426 * 178.61368 * 15 14 13 17 17 N 1.46929 * 108.77822 * 54.63257 * 16 15 14 18 18 C 1.36932 * 120.63016 * 126.41063 * 17 16 15 19 19 H 1.07996 * 119.99923 * 207.66330 * 18 17 16 20 20 C 1.38818 * 119.99979 * 27.66955 * 18 17 16 21 21 N 1.31614 * 120.00173 * 17.35662 * 20 18 17 22 22 Si 1.86802 * 119.99793 * 197.36441 * 20 18 17 23 23 H 1.48500 * 109.47355 * 59.99385 * 22 20 18 24 24 H 1.48498 * 109.47010 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46884 * 299.99801 * 22 20 18 26 26 C 1.46927 * 118.73614 * 306.39113 * 17 16 15 27 27 C 1.53037 * 109.46351 * 154.99936 * 14 13 11 28 28 C 1.47433 * 108.70497 * 358.94317 * 8 7 6 29 29 H 1.09001 * 109.47037 * 300.00210 * 1 2 3 30 30 H 1.08999 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46738 * 59.99878 * 1 2 3 32 32 H 1.09001 * 109.47124 * 119.99777 * 2 1 3 33 33 H 1.09000 * 109.47385 * 240.00207 * 2 1 3 34 34 H 1.09001 * 110.71988 * 271.94363 * 6 4 3 35 35 H 1.09008 * 110.72031 * 35.21292 * 6 4 3 36 36 H 1.08989 * 109.87992 * 97.22458 * 7 6 4 37 37 H 1.09000 * 109.88104 * 218.24275 * 7 6 4 38 38 H 0.97000 * 119.99946 * 0.02562 * 13 11 9 39 39 H 1.09008 * 109.45956 * 35.03270 * 14 13 11 40 40 H 1.09008 * 109.49397 * 298.56123 * 15 14 13 41 41 H 1.08998 * 109.49751 * 58.65607 * 15 14 13 42 42 H 1.09000 * 109.58505 * 294.84031 * 16 15 14 43 43 H 1.09010 * 109.58341 * 174.41891 * 16 15 14 44 44 H 0.96998 * 120.00268 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58783 * 293.82411 * 26 17 16 46 46 H 1.08996 * 109.70539 * 173.46268 * 26 17 16 47 47 H 1.09007 * 109.49757 * 301.33972 * 27 14 13 48 48 H 1.09003 * 109.49610 * 61.43407 * 27 14 13 49 49 H 1.09000 * 110.36152 * 265.28392 * 28 8 7 50 50 H 1.09007 * 110.36382 * 142.96529 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8907 0.5792 -0.4474 6 6 3.8866 2.7544 -0.7237 7 6 5.2478 3.0590 -0.0635 8 7 5.2603 2.3839 1.2425 9 6 6.2838 2.3886 2.1194 10 8 6.1833 1.7938 3.1724 11 6 7.5424 3.1263 1.7949 12 8 7.6426 3.7214 0.7422 13 7 8.5661 3.1306 2.6716 14 6 9.8000 3.8532 2.3534 15 6 10.7133 2.9575 1.5134 16 6 11.9873 3.7283 1.1535 17 7 12.6034 4.2276 2.3904 18 6 13.9148 3.9557 2.6756 19 1 14.2458 3.9102 3.7026 20 6 14.8188 3.7387 1.6447 21 7 14.5240 4.1195 0.4199 22 14 16.4536 2.9059 1.9960 23 1 16.2095 1.5501 2.5506 24 1 17.2319 2.7922 0.7364 25 1 17.2188 3.7128 2.9802 26 6 11.7857 5.0245 3.3151 27 6 10.5140 4.2390 3.6508 28 6 3.9683 1.7000 1.4335 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 4.0074 2.5763 -1.7922 35 1 3.1808 3.5656 -0.5443 36 1 6.0559 2.6760 -0.6866 37 1 5.3619 4.1346 0.0716 38 1 8.4860 2.6545 3.5130 39 1 9.5580 4.7546 1.7903 40 1 10.9760 2.0674 2.0854 41 1 10.1954 2.6640 0.6004 42 1 11.7355 4.5681 0.5058 43 1 12.6834 3.0645 0.6406 44 1 15.1558 3.9682 -0.3004 45 1 11.5175 5.9699 2.8438 46 1 12.3475 5.2181 4.2289 47 1 9.8542 4.8578 4.2591 48 1 10.7785 3.3370 4.2026 49 1 3.2825 2.3347 1.9947 50 1 4.1143 0.7501 1.9479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930033162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:01 Heat of formation + Delta-G solvation = -87.927840 kcal Electronic energy + Delta-G solvation = -29846.766126 eV Core-core repulsion = 25681.876598 eV Total energy + Delta-G solvation = -4164.889528 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90397 -39.48079 -38.44211 -37.33307 -36.89049 -34.53118 -32.31626 -32.10833 -30.73111 -30.14696 -29.58082 -29.03351 -25.89766 -24.64748 -23.35618 -22.80351 -22.28867 -21.70654 -21.27013 -20.04784 -19.24935 -17.92345 -17.70693 -16.94171 -16.76826 -16.15212 -15.99473 -15.71046 -15.07646 -14.88081 -14.77666 -14.38457 -14.11860 -13.78994 -13.64413 -13.54486 -13.33596 -13.17661 -13.02061 -12.90890 -12.62632 -12.53230 -12.45714 -12.12877 -11.87811 -11.61568 -11.53260 -11.46727 -11.13240 -11.07082 -10.96155 -10.72753 -10.43960 -10.29316 -10.11618 -10.09056 -9.79687 -9.76471 -9.40082 -9.06980 -8.82807 -8.45276 -6.71510 -5.80291 -3.22763 1.42097 2.12540 3.09681 3.21923 3.38053 3.44136 3.45201 3.50282 4.03588 4.18132 4.44482 4.48525 4.50177 4.60266 4.71168 4.83122 4.90431 4.94016 5.21853 5.23205 5.23448 5.37230 5.40209 5.41896 5.43160 5.48760 5.55745 5.56986 5.65922 5.71873 5.76501 5.83707 6.02056 6.17962 6.22898 6.36759 6.52586 6.61676 6.70166 6.71900 6.74996 6.89804 6.93175 7.29492 7.34253 7.64170 7.69021 7.78171 8.07916 8.43063 9.19126 9.82368 10.38625 11.28404 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.001948 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.472119 B =14368.470181 C =14633.583466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.371 6.371 4 C 0.076 3.924 5 H 0.082 0.918 6 C -0.132 4.132 7 C 0.109 3.891 8 N -0.593 5.593 9 C 0.523 3.477 10 O -0.523 6.523 11 C 0.506 3.494 12 O -0.516 6.516 13 N -0.691 5.691 14 C 0.149 3.851 15 C -0.148 4.148 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.149 3.851 27 C -0.140 4.140 28 C 0.086 3.914 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.407 0.593 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.091 0.909 44 H 0.255 0.745 45 H 0.021 0.979 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.004 -6.178 -1.115 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.289 6.289 4 C 0.017 3.983 5 H 0.100 0.900 6 C -0.170 4.170 7 C -0.014 4.014 8 N -0.329 5.329 9 C 0.306 3.694 10 O -0.399 6.399 11 C 0.285 3.715 12 O -0.392 6.392 13 N -0.342 5.342 14 C 0.047 3.953 15 C -0.188 4.188 16 C 0.048 3.952 17 N -0.315 5.315 18 C -0.385 4.385 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.022 3.978 27 C -0.180 4.180 28 C -0.036 4.036 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.242 0.758 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.109 0.891 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.902 -5.899 -1.405 26.603 hybrid contribution 0.912 -0.947 0.512 1.411 sum -24.990 -6.846 -0.894 25.926 Atomic orbital electron populations 1.21749 0.93472 1.02420 1.03248 1.22603 0.95822 0.83471 1.00412 1.87936 1.19464 1.26809 1.94713 1.23209 0.81712 0.99036 0.94373 0.89980 1.22858 0.96234 0.97415 1.00461 1.22217 0.97316 0.98968 0.82873 1.48055 1.14268 1.51239 1.19318 1.20145 0.84018 0.81774 0.83451 1.90756 1.81571 1.43844 1.23699 1.19815 0.84367 0.82195 0.85074 1.90756 1.81690 1.43218 1.23584 1.46188 1.14714 1.52190 1.21109 1.21235 0.81392 0.95293 0.97420 1.22599 0.98320 0.99267 0.98593 1.20771 0.90317 0.96108 0.88049 1.44095 1.08172 1.58254 1.20948 1.19139 0.84270 1.42992 0.92113 0.91620 1.25046 0.97692 1.00706 0.96116 1.70019 1.36406 1.47964 1.00181 0.86366 0.83538 0.79847 0.76984 1.21050 1.21635 1.20851 1.20836 0.90081 0.92356 0.94538 1.22371 0.98690 1.01441 0.95520 1.22722 0.84342 0.98517 0.98067 0.91740 0.90973 0.91759 0.93082 0.93039 0.89076 0.89255 0.89679 0.89632 0.75759 0.89550 0.92404 0.92769 0.96013 0.89087 0.93505 0.96096 0.92159 0.92372 0.91561 0.89929 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.05 0.32 6.49 37.16 0.24 0.56 16 3 O -0.37 -2.98 10.15 -35.23 -0.36 -3.34 16 4 C 0.08 0.58 3.54 -24.58 -0.09 0.49 16 5 H 0.08 0.56 7.83 -51.93 -0.41 0.15 16 6 C -0.13 -0.96 6.69 -24.89 -0.17 -1.12 16 7 C 0.11 1.06 5.49 -3.06 -0.02 1.05 16 8 N -0.59 -6.84 3.33 -171.02 -0.57 -7.41 16 9 C 0.52 7.35 7.91 -11.58 -0.09 7.26 16 10 O -0.52 -8.22 16.73 5.49 0.09 -8.13 16 11 C 0.51 7.71 7.82 -11.58 -0.09 7.62 16 12 O -0.52 -8.69 13.79 5.50 0.08 -8.62 16 13 N -0.69 -10.34 5.07 -54.20 -0.27 -10.61 16 14 C 0.15 2.55 2.41 -67.90 -0.16 2.39 16 15 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 16 C 0.17 4.14 5.31 -3.71 -0.02 4.12 16 17 N -0.59 -14.56 2.99 -172.32 -0.52 -15.07 16 18 C -0.26 -6.91 9.59 -15.06 -0.14 -7.06 16 19 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 21 N -0.90 -26.02 11.19 55.49 0.62 -25.40 16 22 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.15 3.01 6.51 -3.71 -0.02 2.99 16 27 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 28 C 0.09 0.81 6.64 -2.53 -0.02 0.80 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.08 0.89 7.58 -51.94 -0.39 0.50 16 37 H 0.09 0.89 7.69 -51.93 -0.40 0.49 16 38 H 0.41 5.53 8.07 -40.82 -0.33 5.20 16 39 H 0.09 1.60 7.58 -51.92 -0.39 1.21 16 40 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 2.43 6.04 -51.92 -0.31 2.12 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 47 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 48 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -31.44 399.89 -9.05 -40.48 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.53 Total: 2.33 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -0.58 Total: 13.25 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.74 Total: -58.50 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.19 Total: -20.09 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.44 -9.05 -40.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930033162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.446 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds