Wall clock time and date at job start Sat Apr 11 2020 05:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.47092 * 2 1 4 4 C 1.42896 * 113.99932 * 179.97438 * 3 2 1 5 5 H 1.09001 * 110.88808 * 26.11805 * 4 3 2 6 6 C 1.55157 * 111.00512 * 149.99897 * 4 3 2 7 7 C 1.54327 * 102.94533 * 153.57679 * 6 4 3 8 8 N 1.47020 * 107.26787 * 337.80582 * 7 6 4 9 9 C 1.34779 * 125.64703 * 178.89473 * 8 7 6 10 10 O 1.21355 * 119.99674 * 180.02562 * 9 8 7 11 11 C 1.49449 * 119.99866 * 0.02562 * 9 8 7 12 12 O 1.21343 * 120.00129 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99866 * 180.02562 * 11 9 8 14 14 C 1.46494 * 120.00182 * 179.97438 * 13 11 9 15 15 C 1.53037 * 109.46428 * 275.07404 * 14 13 11 16 16 C 1.53191 * 109.31426 * 178.61368 * 15 14 13 17 17 N 1.46929 * 108.77822 * 54.63257 * 16 15 14 18 18 C 1.36932 * 120.63016 * 126.41063 * 17 16 15 19 19 H 1.07996 * 119.99923 * 207.66330 * 18 17 16 20 20 C 1.38818 * 119.99979 * 27.66955 * 18 17 16 21 21 N 1.31614 * 120.00173 * 17.35662 * 20 18 17 22 22 Si 1.86802 * 119.99793 * 197.36441 * 20 18 17 23 23 H 1.48500 * 109.47355 * 59.99385 * 22 20 18 24 24 H 1.48498 * 109.47010 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46884 * 299.99801 * 22 20 18 26 26 C 1.46927 * 118.73614 * 306.39113 * 17 16 15 27 27 C 1.53037 * 109.46351 * 154.99936 * 14 13 11 28 28 C 1.47433 * 108.70497 * 358.94317 * 8 7 6 29 29 H 1.09001 * 109.47037 * 300.00210 * 1 2 3 30 30 H 1.08999 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46738 * 59.99878 * 1 2 3 32 32 H 1.09001 * 109.47124 * 119.99777 * 2 1 3 33 33 H 1.09000 * 109.47385 * 240.00207 * 2 1 3 34 34 H 1.09001 * 110.71988 * 271.94363 * 6 4 3 35 35 H 1.09008 * 110.72031 * 35.21292 * 6 4 3 36 36 H 1.08989 * 109.87992 * 97.22458 * 7 6 4 37 37 H 1.09000 * 109.88104 * 218.24275 * 7 6 4 38 38 H 0.97000 * 119.99946 * 0.02562 * 13 11 9 39 39 H 1.09008 * 109.45956 * 35.03270 * 14 13 11 40 40 H 1.09008 * 109.49397 * 298.56123 * 15 14 13 41 41 H 1.08998 * 109.49751 * 58.65607 * 15 14 13 42 42 H 1.09000 * 109.58505 * 294.84031 * 16 15 14 43 43 H 1.09010 * 109.58341 * 174.41891 * 16 15 14 44 44 H 0.96998 * 120.00268 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.58783 * 293.82411 * 26 17 16 46 46 H 1.08996 * 109.70539 * 173.46268 * 26 17 16 47 47 H 1.09007 * 109.49757 * 301.33972 * 27 14 13 48 48 H 1.09003 * 109.49610 * 61.43407 * 27 14 13 49 49 H 1.09000 * 110.36152 * 265.28392 * 28 8 7 50 50 H 1.09007 * 110.36382 * 142.96529 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8907 0.5792 -0.4474 6 6 3.8866 2.7544 -0.7237 7 6 5.2478 3.0590 -0.0635 8 7 5.2603 2.3839 1.2425 9 6 6.2838 2.3886 2.1194 10 8 6.1833 1.7938 3.1724 11 6 7.5424 3.1263 1.7949 12 8 7.6426 3.7214 0.7422 13 7 8.5661 3.1306 2.6716 14 6 9.8000 3.8532 2.3534 15 6 10.7133 2.9575 1.5134 16 6 11.9873 3.7283 1.1535 17 7 12.6034 4.2276 2.3904 18 6 13.9148 3.9557 2.6756 19 1 14.2458 3.9102 3.7026 20 6 14.8188 3.7387 1.6447 21 7 14.5240 4.1195 0.4199 22 14 16.4536 2.9059 1.9960 23 1 16.2095 1.5501 2.5506 24 1 17.2319 2.7922 0.7364 25 1 17.2188 3.7128 2.9802 26 6 11.7857 5.0245 3.3151 27 6 10.5140 4.2390 3.6508 28 6 3.9683 1.7000 1.4335 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 4.0074 2.5763 -1.7922 35 1 3.1808 3.5656 -0.5443 36 1 6.0559 2.6760 -0.6866 37 1 5.3619 4.1346 0.0716 38 1 8.4860 2.6545 3.5130 39 1 9.5580 4.7546 1.7903 40 1 10.9760 2.0674 2.0854 41 1 10.1954 2.6640 0.6004 42 1 11.7355 4.5681 0.5058 43 1 12.6834 3.0645 0.6406 44 1 15.1558 3.9682 -0.3004 45 1 11.5175 5.9699 2.8438 46 1 12.3475 5.2181 4.2289 47 1 9.8542 4.8578 4.2591 48 1 10.7785 3.3370 4.2026 49 1 3.2825 2.3347 1.9947 50 1 4.1143 0.7501 1.9479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930033162.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:00 Heat of formation + Delta-G solvation = -109.013229 kcal Electronic energy + Delta-G solvation = -29847.680457 eV Core-core repulsion = 25681.876598 eV Total energy + Delta-G solvation = -4165.803859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99212 -40.48670 -39.44892 -38.82921 -37.70655 -36.09554 -33.94825 -32.89678 -31.83167 -31.36917 -31.28795 -29.81603 -27.40943 -26.03429 -24.24403 -23.93590 -23.64098 -22.81585 -22.22821 -21.38355 -20.65322 -19.11876 -18.57043 -18.40955 -18.03644 -17.11360 -17.02407 -16.67818 -16.64457 -15.95765 -15.79061 -15.54728 -15.36297 -15.29757 -15.03157 -14.78975 -14.46834 -14.29876 -14.10928 -14.00125 -13.95727 -13.40793 -13.22315 -13.16112 -13.04358 -12.90852 -12.65954 -12.56889 -12.56129 -12.26362 -12.14952 -12.10501 -12.08446 -11.85791 -11.67553 -11.57867 -11.40450 -10.76817 -10.58011 -10.54596 -10.21699 -9.93937 -8.71420 -7.87422 -5.32509 0.26095 1.08575 1.48199 1.50731 1.57223 2.04562 2.25816 2.52113 2.70844 3.16883 3.29102 3.46575 3.51039 3.66664 3.81712 3.92060 4.01418 4.16285 4.18171 4.22011 4.27926 4.31656 4.44967 4.50307 4.54449 4.63929 4.64549 4.71203 4.76436 4.81504 4.86670 4.89641 4.98633 5.01195 5.03161 5.06609 5.09366 5.11255 5.29826 5.30636 5.33588 5.45863 5.64314 5.70051 5.89700 6.14373 6.19653 6.38875 6.57376 6.88596 7.14096 7.84875 8.36786 9.19524 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.001948 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.472119 B =14368.470181 C =14633.583466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.046 3.954 3 O -0.383 6.383 4 C 0.083 3.917 5 H 0.094 0.906 6 C -0.122 4.122 7 C 0.106 3.894 8 N -0.588 5.588 9 C 0.524 3.476 10 O -0.543 6.543 11 C 0.506 3.494 12 O -0.534 6.534 13 N -0.683 5.683 14 C 0.161 3.839 15 C -0.132 4.132 16 C 0.182 3.818 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.072 0.928 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.279 1.279 24 H -0.296 1.296 25 H -0.274 1.274 26 C 0.143 3.857 27 C -0.125 4.125 28 C 0.083 3.917 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.417 0.583 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.053 0.947 42 H -0.003 1.003 43 H 0.057 0.943 44 H 0.250 0.750 45 H 0.018 0.982 46 H 0.067 0.933 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.662 -7.063 -0.246 28.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.301 6.301 4 C 0.024 3.976 5 H 0.112 0.888 6 C -0.159 4.159 7 C -0.016 4.016 8 N -0.322 5.322 9 C 0.307 3.693 10 O -0.421 6.421 11 C 0.287 3.713 12 O -0.411 6.411 13 N -0.335 5.335 14 C 0.057 3.943 15 C -0.172 4.172 16 C 0.056 3.944 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.089 0.911 20 C -0.247 4.247 21 N -0.582 5.582 22 Si 0.795 3.205 23 H -0.205 1.205 24 H -0.223 1.223 25 H -0.199 1.199 26 C 0.017 3.983 27 C -0.165 4.165 28 C -0.039 4.039 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.254 0.746 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.015 0.985 43 H 0.075 0.925 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.101 0.899 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -27.614 -6.786 -0.515 28.441 hybrid contribution 1.340 -0.631 0.221 1.498 sum -26.274 -7.417 -0.295 27.302 Atomic orbital electron populations 1.21765 0.92804 1.03361 1.02822 1.22797 0.96433 0.82662 1.01141 1.87928 1.19357 1.28183 1.94667 1.23156 0.81850 0.99624 0.92998 0.88807 1.22824 0.94493 0.97391 1.01221 1.22308 0.98802 0.98369 0.82102 1.48152 1.14257 1.50540 1.19283 1.19809 0.84077 0.81775 0.83661 1.90747 1.81921 1.44902 1.24520 1.20081 0.84801 0.81832 0.84635 1.90754 1.82122 1.43928 1.24325 1.45942 1.13864 1.52078 1.21570 1.20898 0.81811 0.94275 0.97268 1.22343 0.96759 0.98998 0.99136 1.20494 0.91340 0.94903 0.87676 1.44339 1.08129 1.59285 1.21534 1.19516 0.85414 1.42056 0.92373 0.91063 1.25812 1.01093 1.01751 0.96017 1.70180 1.37441 1.49585 1.00968 0.85347 0.79675 0.78939 0.76516 1.20488 1.22261 1.19934 1.21019 0.91208 0.92289 0.93769 1.22186 0.97199 1.01725 0.95375 1.22884 0.83214 0.98199 0.99575 0.92340 0.89389 0.91984 0.92706 0.91952 0.87162 0.88873 0.90340 0.90317 0.74569 0.90802 0.92311 0.92819 0.98517 0.92464 0.94115 0.96441 0.91422 0.89007 0.90912 0.89857 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 71.98 0.74 -0.47 16 2 C 0.05 0.45 6.49 71.98 0.47 0.92 16 3 O -0.38 -5.40 10.15 -148.98 -1.51 -6.91 16 4 C 0.08 1.10 3.54 31.99 0.11 1.21 16 5 H 0.09 1.04 7.83 -2.39 -0.02 1.02 16 6 C -0.12 -1.51 6.69 31.78 0.21 -1.30 16 7 C 0.11 1.95 5.49 86.73 0.48 2.43 16 8 N -0.59 -12.87 3.33 -813.35 -2.71 -15.57 16 9 C 0.52 14.18 7.91 87.27 0.69 14.87 16 10 O -0.54 -16.41 16.73 -3.26 -0.05 -16.47 16 11 C 0.51 14.93 7.82 87.27 0.68 15.61 16 12 O -0.53 -17.71 13.79 -3.23 -0.04 -17.76 16 13 N -0.68 -19.39 5.07 -443.76 -2.25 -21.64 16 14 C 0.16 5.34 2.41 45.02 0.11 5.45 16 15 C -0.13 -5.16 5.65 30.67 0.17 -4.99 16 16 C 0.18 8.95 5.31 86.36 0.46 9.40 16 17 N -0.61 -30.17 2.99 -699.08 -2.09 -32.26 16 18 C -0.26 -14.30 9.59 84.04 0.81 -13.49 16 19 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 20 C -0.05 -2.86 4.91 84.86 0.42 -2.44 16 21 N -0.94 -55.64 11.19 21.65 0.24 -55.39 16 22 Si 0.97 44.69 29.59 68.60 2.03 46.72 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 26 C 0.14 5.65 6.51 86.36 0.56 6.21 16 27 C -0.13 -3.87 5.55 30.67 0.17 -3.70 16 28 C 0.08 1.45 6.64 86.85 0.58 2.02 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 0.49 8.12 -2.39 -0.02 0.47 16 34 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 1.58 7.58 -2.39 -0.02 1.56 16 37 H 0.08 1.58 7.69 -2.39 -0.02 1.56 16 38 H 0.42 10.44 8.07 -92.71 -0.75 9.69 16 39 H 0.07 2.69 7.58 -2.38 -0.02 2.67 16 40 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.06 3.18 6.04 -2.38 -0.01 3.17 16 44 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 2.55 7.94 -2.39 -0.02 2.53 16 47 H 0.09 2.28 8.14 -2.38 -0.02 2.27 16 48 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.08 1.45 8.04 -2.38 -0.02 1.43 16 Total: -1.00 -68.25 399.89 0.45 -67.81 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.18 Total: 19.74 kcal Atomic # 6 Polarization: 25.07 SS G_CDS: 6.65 Total: 31.73 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -6.81 Total: -124.87 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.61 Total: -41.13 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -68.25 0.45 -67.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930033162.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.206 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds