Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99976 * 2 1 4 4 N 1.34779 * 119.99938 * 179.97438 * 2 1 3 5 5 C 1.46925 * 120.62791 * 179.97438 * 4 2 1 6 6 C 1.53197 * 108.77522 * 233.58953 * 5 4 2 7 7 C 1.53042 * 109.31491 * 305.36799 * 6 5 4 8 8 C 1.50701 * 109.46128 * 181.38628 * 7 6 5 9 9 O 1.21280 * 119.99781 * 359.96876 * 8 7 6 10 10 N 1.34771 * 119.99622 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09005 * 110.64344 * 308.14216 * 12 11 10 14 14 C 1.54320 * 110.71982 * 71.47399 * 12 11 10 15 15 N 1.47029 * 107.27360 * 140.55789 * 14 12 11 16 16 C 1.36931 * 125.65395 * 181.02752 * 15 14 12 17 17 H 1.08010 * 119.99621 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00252 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99945 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46899 * 59.99886 * 20 18 16 22 22 H 1.48496 * 109.47036 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47167 * 300.00033 * 20 18 16 24 24 C 1.47427 * 108.69989 * 1.05987 * 15 14 12 25 25 C 1.54911 * 104.83293 * 335.87269 * 24 15 14 26 26 H 1.08991 * 111.03613 * 278.92034 * 25 24 15 27 27 O 1.42906 * 111.00453 * 155.08259 * 25 24 15 28 28 C 1.53039 * 109.52415 * 61.36934 * 7 6 5 29 29 C 1.46928 * 120.63283 * 359.97438 * 4 2 1 30 30 H 1.09007 * 109.47264 * 240.00090 * 1 2 3 31 31 H 1.08996 * 109.47529 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46914 * 119.99999 * 1 2 3 33 33 H 1.08996 * 109.58659 * 113.80878 * 5 4 2 34 34 H 1.08999 * 109.59263 * 353.37446 * 5 4 2 35 35 H 1.09001 * 109.49555 * 185.41639 * 6 5 4 36 36 H 1.08998 * 109.52340 * 65.33408 * 6 5 4 37 37 H 1.09002 * 109.45623 * 301.36144 * 7 6 5 38 38 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 40 40 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 41 41 H 1.08998 * 109.88589 * 259.97424 * 14 12 11 42 42 H 1.09000 * 109.88188 * 21.14206 * 14 12 11 43 43 H 0.96996 * 119.99807 * 180.02562 * 19 18 16 44 44 H 1.08994 * 110.36930 * 217.03622 * 24 15 14 45 45 H 1.09001 * 110.45957 * 94.75573 * 24 15 14 46 46 H 0.96695 * 113.99958 * 67.80442 * 27 25 24 47 47 H 1.09004 * 109.49763 * 58.58208 * 28 7 6 48 48 H 1.09002 * 109.49633 * 178.67765 * 28 7 6 49 49 H 1.09002 * 109.58486 * 246.19700 * 29 4 2 50 50 H 1.09003 * 109.58263 * 6.47921 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6500 -1.1833 0.0000 6 6 4.1332 -2.0504 -1.1669 7 6 3.4894 -3.4354 -1.0689 8 6 3.9888 -4.3021 -2.1961 9 8 4.7808 -3.8560 -2.9989 10 7 3.5550 -5.5728 -2.3120 11 6 4.0400 -6.4152 -3.4082 12 6 3.3977 -7.8003 -3.3096 13 1 3.5295 -8.2148 -2.3101 14 6 1.9023 -7.7366 -3.6856 15 7 1.5978 -8.9420 -4.4704 16 6 0.3799 -9.2550 -5.0124 17 1 -0.4587 -8.5877 -4.8776 18 6 0.2229 -10.4297 -5.7351 19 7 1.2449 -11.2425 -5.8998 20 14 -1.4388 -10.8569 -6.4738 21 1 -1.8454 -9.7926 -7.4264 22 1 -1.3427 -12.1530 -7.1921 23 1 -2.4491 -10.9642 -5.3909 24 6 2.8207 -9.7585 -4.5766 25 6 3.9852 -8.7555 -4.3819 26 1 4.1992 -8.2202 -5.3068 27 8 5.1543 -9.4165 -3.8936 28 6 1.9680 -3.3002 -1.1651 29 6 1.4603 -2.4477 0.0017 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 4.0112 -1.6012 0.9396 34 1 4.0266 -0.1675 -0.1193 35 1 5.2177 -2.1494 -1.1219 36 1 3.8492 -1.5832 -2.1099 37 1 3.7538 -3.8920 -0.1151 38 1 2.9218 -5.9297 -1.6698 39 1 3.7753 -5.9586 -4.3619 40 1 5.1236 -6.5120 -3.3400 41 1 1.2932 -7.7191 -2.7818 42 1 1.7080 -6.8462 -4.2834 43 1 1.1353 -12.0632 -6.4051 44 1 2.8818 -10.2242 -5.5601 45 1 2.8403 -10.5187 -3.7957 46 1 5.5569 -10.0241 -4.5290 47 1 1.7042 -2.8208 -2.1079 48 1 1.5113 -4.2888 -1.1189 49 1 1.6427 -2.9687 0.9415 50 1 0.3918 -2.2657 -0.1139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958657888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -102.573142 kcal Electronic energy + Delta-G solvation = -30049.101081 eV Core-core repulsion = 25883.576484 eV Total energy + Delta-G solvation = -4165.524596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.76938 -39.71342 -38.33978 -37.26764 -35.22633 -34.72035 -33.49509 -32.37423 -31.79629 -29.87390 -29.67667 -27.68648 -26.42834 -25.29068 -23.66687 -23.43419 -21.88748 -20.71604 -20.18140 -19.78328 -19.28176 -17.74606 -17.12154 -17.03730 -16.62840 -16.23395 -15.86061 -15.78928 -15.36251 -15.09682 -14.54739 -14.43503 -14.11324 -13.98511 -13.71585 -13.62583 -13.51779 -13.04866 -13.02533 -12.74789 -12.58977 -12.48644 -12.45384 -12.08200 -12.00373 -11.67048 -11.59632 -11.30935 -11.14206 -11.08501 -10.96631 -10.84919 -10.70372 -10.14637 -10.13824 -10.03732 -9.85760 -9.68723 -9.21730 -9.05549 -8.99192 -8.76362 -6.97559 -5.77111 -3.20050 2.28699 2.56646 2.64510 3.14296 3.33347 3.37706 3.39134 4.13684 4.26397 4.33923 4.38384 4.46602 4.63916 4.68096 4.81624 4.86578 4.92195 4.97160 5.00477 5.04470 5.13153 5.16572 5.27951 5.34516 5.38477 5.43942 5.45545 5.50114 5.60909 5.65082 5.71422 5.88604 5.97225 5.98380 6.01472 6.14336 6.14779 6.31186 6.40614 6.53824 6.74502 7.01461 7.29440 7.47684 7.48798 7.68584 7.82034 8.10316 8.19759 8.23183 9.08678 9.69676 10.32613 11.26804 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.002362 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.937969 B =11849.784585 C =13507.938985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.615 5.615 5 C 0.110 3.890 6 C -0.113 4.113 7 C -0.107 4.107 8 C 0.515 3.485 9 O -0.542 6.542 10 N -0.723 5.723 11 C 0.132 3.868 12 C -0.104 4.104 13 H 0.086 0.914 14 C 0.143 3.857 15 N -0.601 5.601 16 C -0.226 4.226 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.917 3.083 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.285 1.285 24 C 0.128 3.872 25 C 0.080 3.920 26 H 0.060 0.940 27 O -0.569 6.569 28 C -0.129 4.129 29 C 0.108 3.892 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.400 0.600 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.028 0.972 43 H 0.254 0.746 44 H 0.109 0.891 45 H 0.022 0.978 46 H 0.377 0.623 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 14.802 13.106 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.302 3.698 3 O -0.426 6.426 4 N -0.349 5.349 5 C -0.012 4.012 6 C -0.152 4.152 7 C -0.128 4.128 8 C 0.300 3.700 9 O -0.419 6.419 10 N -0.374 5.374 11 C 0.009 3.991 12 C -0.124 4.124 13 H 0.104 0.896 14 C 0.016 3.984 15 N -0.328 5.328 16 C -0.354 4.354 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.571 5.571 20 Si 0.747 3.253 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.003 3.997 25 C 0.020 3.980 26 H 0.078 0.922 27 O -0.374 6.374 28 C -0.168 4.168 29 C -0.015 4.015 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.235 0.765 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.040 0.960 46 H 0.224 0.776 47 H 0.095 0.905 48 H 0.104 0.896 49 H 0.093 0.907 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.659 15.862 12.918 20.629 hybrid contribution -1.112 -1.076 -0.546 1.641 sum 1.547 14.786 12.371 19.341 Atomic orbital electron populations 1.21959 0.91722 1.05529 1.04262 1.20844 0.90704 0.82972 0.75273 1.90715 1.70814 1.31075 1.50024 1.48206 1.07095 1.06081 1.73564 1.21656 0.79229 1.02121 0.98209 1.21731 1.01183 0.93034 0.99222 1.21332 0.96553 0.96471 0.98473 1.20517 0.81178 0.82019 0.86240 1.90708 1.34456 1.73218 1.43475 1.46072 1.47449 1.12616 1.31290 1.21435 0.98770 0.89232 0.89663 1.22402 0.96271 0.93185 1.00502 0.89617 1.21364 0.91031 0.91424 0.94534 1.44309 1.07798 1.19976 1.60738 1.19031 0.86407 1.03761 1.26240 0.90334 1.24810 0.98049 0.96922 1.00764 1.69749 1.28762 1.13129 1.45471 0.86117 0.82761 0.77498 0.78902 1.21057 1.21498 1.21121 1.22537 0.82385 0.91046 1.03740 1.23315 0.86179 0.94165 0.94339 0.92164 1.86364 1.43348 1.62194 1.45515 1.21951 0.93741 1.01310 0.99795 1.21787 0.97122 0.83800 0.98752 0.89312 0.89006 0.89183 0.91312 0.88626 0.89741 0.90634 0.88247 0.76538 0.91317 0.91255 0.95826 0.95376 0.93522 0.87339 0.95998 0.77591 0.90491 0.89571 0.90686 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 8.67 36.00 0.31 -0.66 16 2 C 0.51 4.88 7.81 -10.99 -0.09 4.79 16 3 O -0.55 -7.62 16.50 5.56 0.09 -7.52 16 4 N -0.61 -4.83 2.97 -172.78 -0.51 -5.34 16 5 C 0.11 0.90 6.43 -3.71 -0.02 0.88 16 6 C -0.11 -1.03 4.65 -26.61 -0.12 -1.15 16 7 C -0.11 -0.88 2.49 -91.73 -0.23 -1.11 16 8 C 0.51 6.27 7.15 -10.99 -0.08 6.20 16 9 O -0.54 -8.90 15.98 5.56 0.09 -8.81 16 10 N -0.72 -8.43 5.36 -60.29 -0.32 -8.76 16 11 C 0.13 1.92 5.02 -4.04 -0.02 1.90 16 12 C -0.10 -1.71 2.70 -88.79 -0.24 -1.95 16 13 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 14 C 0.14 2.70 6.75 -3.06 -0.02 2.68 16 15 N -0.60 -14.60 3.39 -170.07 -0.58 -15.17 16 16 C -0.23 -6.03 10.27 -15.06 -0.15 -6.19 16 17 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 19 N -0.92 -25.90 10.09 55.49 0.56 -25.34 16 20 Si 0.92 21.28 29.55 -169.99 -5.02 16.25 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.13 2.97 5.62 -2.53 -0.01 2.95 16 25 C 0.08 1.47 3.88 -24.58 -0.10 1.38 16 26 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 27 O -0.57 -9.51 13.47 -35.23 -0.47 -9.98 16 28 C -0.13 -0.85 5.27 -26.63 -0.14 -0.99 16 29 C 0.11 0.55 6.34 -3.72 -0.02 0.53 16 30 H 0.09 0.31 7.94 -51.93 -0.41 -0.10 16 31 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.09 0.38 7.70 -51.93 -0.40 -0.02 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.94 7.01 -51.93 -0.36 0.57 16 35 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.40 3.73 7.87 -40.82 -0.32 3.41 16 39 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.03 0.54 7.68 -51.93 -0.40 0.14 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.11 2.80 5.87 -51.93 -0.31 2.50 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.38 4.88 9.12 45.56 0.42 5.30 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.46 7.53 -51.93 -0.39 0.07 16 49 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.32 5.93 -51.93 -0.31 0.01 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -35.26 395.38 -8.75 -44.01 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -7.50 Total: 5.79 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -1.03 Total: 8.92 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.85 Total: -54.61 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.29 Total: -26.32 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.26 -8.75 -44.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958657888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.560 kcal (2) G-P(sol) polarization free energy of solvation -35.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds