Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 119.99976 * 2 1 4 4 N 1.34779 * 119.99938 * 179.97438 * 2 1 3 5 5 C 1.46925 * 120.62791 * 179.97438 * 4 2 1 6 6 C 1.53197 * 108.77522 * 233.58953 * 5 4 2 7 7 C 1.53042 * 109.31491 * 305.36799 * 6 5 4 8 8 C 1.50701 * 109.46128 * 181.38628 * 7 6 5 9 9 O 1.21280 * 119.99781 * 359.96876 * 8 7 6 10 10 N 1.34771 * 119.99622 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99622 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47212 * 179.97438 * 11 10 8 13 13 H 1.09005 * 110.64344 * 308.14216 * 12 11 10 14 14 C 1.54320 * 110.71982 * 71.47399 * 12 11 10 15 15 N 1.47029 * 107.27360 * 140.55789 * 14 12 11 16 16 C 1.36931 * 125.65395 * 181.02752 * 15 14 12 17 17 H 1.08010 * 119.99621 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00252 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99945 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99959 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46899 * 59.99886 * 20 18 16 22 22 H 1.48496 * 109.47036 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47167 * 300.00033 * 20 18 16 24 24 C 1.47427 * 108.69989 * 1.05987 * 15 14 12 25 25 C 1.54911 * 104.83293 * 335.87269 * 24 15 14 26 26 H 1.08991 * 111.03613 * 278.92034 * 25 24 15 27 27 O 1.42906 * 111.00453 * 155.08259 * 25 24 15 28 28 C 1.53039 * 109.52415 * 61.36934 * 7 6 5 29 29 C 1.46928 * 120.63283 * 359.97438 * 4 2 1 30 30 H 1.09007 * 109.47264 * 240.00090 * 1 2 3 31 31 H 1.08996 * 109.47529 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.46914 * 119.99999 * 1 2 3 33 33 H 1.08996 * 109.58659 * 113.80878 * 5 4 2 34 34 H 1.08999 * 109.59263 * 353.37446 * 5 4 2 35 35 H 1.09001 * 109.49555 * 185.41639 * 6 5 4 36 36 H 1.08998 * 109.52340 * 65.33408 * 6 5 4 37 37 H 1.09002 * 109.45623 * 301.36144 * 7 6 5 38 38 H 0.96996 * 120.00772 * 359.97438 * 10 8 7 39 39 H 1.09002 * 109.47068 * 299.99729 * 11 10 8 40 40 H 1.09001 * 109.47372 * 59.99816 * 11 10 8 41 41 H 1.08998 * 109.88589 * 259.97424 * 14 12 11 42 42 H 1.09000 * 109.88188 * 21.14206 * 14 12 11 43 43 H 0.96996 * 119.99807 * 180.02562 * 19 18 16 44 44 H 1.08994 * 110.36930 * 217.03622 * 24 15 14 45 45 H 1.09001 * 110.45957 * 94.75573 * 24 15 14 46 46 H 0.96695 * 113.99958 * 67.80442 * 27 25 24 47 47 H 1.09004 * 109.49763 * 58.58208 * 28 7 6 48 48 H 1.09002 * 109.49633 * 178.67765 * 28 7 6 49 49 H 1.09002 * 109.58486 * 246.19700 * 29 4 2 50 50 H 1.09003 * 109.58263 * 6.47921 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6500 -1.1833 0.0000 6 6 4.1332 -2.0504 -1.1669 7 6 3.4894 -3.4354 -1.0689 8 6 3.9888 -4.3021 -2.1961 9 8 4.7808 -3.8560 -2.9989 10 7 3.5550 -5.5728 -2.3120 11 6 4.0400 -6.4152 -3.4082 12 6 3.3977 -7.8003 -3.3096 13 1 3.5295 -8.2148 -2.3101 14 6 1.9023 -7.7366 -3.6856 15 7 1.5978 -8.9420 -4.4704 16 6 0.3799 -9.2550 -5.0124 17 1 -0.4587 -8.5877 -4.8776 18 6 0.2229 -10.4297 -5.7351 19 7 1.2449 -11.2425 -5.8998 20 14 -1.4388 -10.8569 -6.4738 21 1 -1.8454 -9.7926 -7.4264 22 1 -1.3427 -12.1530 -7.1921 23 1 -2.4491 -10.9642 -5.3909 24 6 2.8207 -9.7585 -4.5766 25 6 3.9852 -8.7555 -4.3819 26 1 4.1992 -8.2202 -5.3068 27 8 5.1543 -9.4165 -3.8936 28 6 1.9680 -3.3002 -1.1651 29 6 1.4603 -2.4477 0.0017 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 4.0112 -1.6012 0.9396 34 1 4.0266 -0.1675 -0.1193 35 1 5.2177 -2.1494 -1.1219 36 1 3.8492 -1.5832 -2.1099 37 1 3.7538 -3.8920 -0.1151 38 1 2.9218 -5.9297 -1.6698 39 1 3.7753 -5.9586 -4.3619 40 1 5.1236 -6.5120 -3.3400 41 1 1.2932 -7.7191 -2.7818 42 1 1.7080 -6.8462 -4.2834 43 1 1.1353 -12.0632 -6.4051 44 1 2.8818 -10.2242 -5.5601 45 1 2.8403 -10.5187 -3.7957 46 1 5.5569 -10.0241 -4.5290 47 1 1.7042 -2.8208 -2.1079 48 1 1.5113 -4.2888 -1.1189 49 1 1.6427 -2.9687 0.9415 50 1 0.3918 -2.2657 -0.1139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958657888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -130.235306 kcal Electronic energy + Delta-G solvation = -30050.300602 eV Core-core repulsion = 25883.576484 eV Total energy + Delta-G solvation = -4166.724118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54319 -40.65284 -39.78188 -38.06911 -36.64985 -36.10835 -34.32429 -33.91605 -32.51495 -31.30988 -30.30675 -29.31130 -27.56607 -26.62671 -24.93000 -24.16944 -22.78559 -22.19255 -21.47191 -20.92608 -19.96741 -18.97674 -18.57853 -18.19520 -17.71606 -17.12538 -16.85075 -16.71829 -16.54500 -16.28915 -15.76014 -15.67784 -15.06760 -14.94002 -14.86413 -14.72658 -14.42741 -14.27086 -14.04738 -13.82451 -13.65613 -13.51809 -13.22276 -13.11601 -13.08255 -13.02238 -12.83667 -12.71329 -12.38062 -12.34717 -12.22689 -11.88638 -11.86566 -11.79600 -11.65762 -11.38257 -10.97053 -10.85036 -10.73057 -10.68254 -10.09576 -9.68870 -8.91378 -7.78808 -5.23910 1.48686 1.51117 1.57398 1.60235 1.64673 2.04352 2.18388 2.48762 3.20428 3.32236 3.51631 3.61597 3.68718 3.72718 3.78549 3.84965 3.93321 4.06689 4.11805 4.27359 4.31322 4.42189 4.42860 4.47650 4.51107 4.60947 4.63159 4.67220 4.73252 4.78980 4.82197 4.83942 4.90991 4.95075 4.99284 5.12257 5.14905 5.26926 5.29691 5.42453 5.44145 5.49540 5.54663 5.74789 6.25621 6.41933 6.56931 6.87238 7.08168 7.16117 7.26079 7.75246 8.37697 9.22950 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.002362 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.937969 B =11849.784585 C =13507.938985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.502 3.498 3 O -0.605 6.605 4 N -0.614 5.614 5 C 0.113 3.887 6 C -0.107 4.107 7 C -0.097 4.097 8 C 0.513 3.487 9 O -0.589 6.589 10 N -0.712 5.712 11 C 0.146 3.854 12 C -0.086 4.086 13 H 0.096 0.904 14 C 0.141 3.859 15 N -0.624 5.624 16 C -0.238 4.238 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.277 1.277 22 H -0.296 1.296 23 H -0.276 1.276 24 C 0.134 3.866 25 C 0.094 3.906 26 H 0.063 0.937 27 O -0.569 6.569 28 C -0.127 4.127 29 C 0.107 3.893 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.132 0.868 38 H 0.416 0.584 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.032 0.968 43 H 0.247 0.753 44 H 0.076 0.924 45 H -0.007 1.007 46 H 0.393 0.607 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 14.907 15.145 21.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.293 3.707 3 O -0.487 6.487 4 N -0.346 5.346 5 C -0.009 4.009 6 C -0.146 4.146 7 C -0.118 4.118 8 C 0.301 3.699 9 O -0.469 6.469 10 N -0.364 5.364 11 C 0.022 3.978 12 C -0.105 4.105 13 H 0.114 0.886 14 C 0.017 3.983 15 N -0.351 5.351 16 C -0.367 4.367 17 H 0.105 0.895 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.203 1.203 22 H -0.223 1.223 23 H -0.202 1.202 24 C 0.008 3.992 25 C 0.033 3.967 26 H 0.081 0.919 27 O -0.376 6.376 28 C -0.165 4.165 29 C -0.014 4.014 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.150 0.850 38 H 0.253 0.747 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.011 0.989 46 H 0.243 0.757 47 H 0.076 0.924 48 H 0.126 0.874 49 H 0.120 0.880 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.122 15.944 14.994 21.915 hybrid contribution -0.588 -1.134 -1.192 1.747 sum 0.534 14.810 13.802 20.251 Atomic orbital electron populations 1.21979 0.88481 1.05931 1.06351 1.21630 0.92358 0.82515 0.74218 1.90688 1.72160 1.33111 1.52779 1.48356 1.06961 1.06935 1.72390 1.21573 0.79945 1.00695 0.98716 1.21620 1.00902 0.93812 0.98221 1.21353 0.97667 0.94805 0.97994 1.21218 0.80166 0.82027 0.86466 1.90697 1.36674 1.74076 1.45490 1.45918 1.47494 1.12273 1.30744 1.21088 0.98253 0.88365 0.90122 1.22228 0.94382 0.93769 1.00109 0.88625 1.21528 0.92912 0.89401 0.94502 1.44597 1.07480 1.21591 1.61464 1.19443 0.87655 1.03790 1.25789 0.89548 1.25641 1.01318 0.97249 1.01789 1.70003 1.30442 1.13235 1.46310 0.85123 0.79085 0.76778 0.78175 1.20312 1.22272 1.20206 1.22294 0.84357 0.91706 1.00867 1.23011 0.85076 0.93153 0.95470 0.91897 1.86338 1.42376 1.62589 1.46285 1.21976 0.92207 1.02641 0.99685 1.22062 0.98063 0.82121 0.99191 0.86477 0.89645 0.87462 0.88911 0.91028 0.90496 0.93573 0.85007 0.74717 0.92714 0.91756 0.93971 0.95038 0.94304 0.90562 0.98892 0.75712 0.92406 0.87436 0.87994 0.86566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 8.67 71.24 0.62 -0.82 16 2 C 0.50 9.00 7.81 87.66 0.68 9.68 16 3 O -0.61 -17.26 16.50 -3.03 -0.05 -17.31 16 4 N -0.61 -8.35 2.97 -818.95 -2.43 -10.79 16 5 C 0.11 1.74 6.43 86.36 0.56 2.30 16 6 C -0.11 -1.88 4.65 30.67 0.14 -1.73 16 7 C -0.10 -1.34 2.49 -11.51 -0.03 -1.37 16 8 C 0.51 11.62 7.15 87.66 0.63 12.24 16 9 O -0.59 -19.24 15.98 -3.03 -0.05 -19.29 16 10 N -0.71 -14.72 5.36 -463.06 -2.48 -17.20 16 11 C 0.15 3.97 5.02 86.38 0.43 4.41 16 12 C -0.09 -2.63 2.70 -9.61 -0.03 -2.66 16 13 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 14 C 0.14 5.10 6.75 86.73 0.59 5.68 16 15 N -0.62 -30.10 3.39 -691.97 -2.35 -32.45 16 16 C -0.24 -12.61 10.27 84.03 0.86 -11.74 16 17 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -3.67 5.49 84.86 0.47 -3.20 16 19 N -0.95 -54.59 10.09 21.65 0.22 -54.37 16 20 Si 0.98 43.73 29.55 68.60 2.03 45.75 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 C 0.13 6.26 5.62 86.86 0.49 6.75 16 25 C 0.09 3.36 3.88 31.99 0.12 3.48 16 26 H 0.06 2.24 8.05 -2.39 -0.02 2.22 16 27 O -0.57 -18.24 13.47 -148.98 -2.01 -20.25 16 28 C -0.13 -1.22 5.27 30.66 0.16 -1.06 16 29 C 0.11 0.64 6.34 86.35 0.55 1.19 16 30 H 0.12 0.34 7.94 -2.38 -0.02 0.32 16 31 H 0.08 0.87 8.12 -2.39 -0.02 0.85 16 32 H 0.11 0.56 7.70 -2.38 -0.02 0.54 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.47 7.01 -2.39 -0.02 1.45 16 35 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 36 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 37 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.42 6.09 7.87 -92.71 -0.73 5.36 16 39 H 0.05 1.67 7.93 -2.39 -0.02 1.65 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.85 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.03 1.13 7.68 -2.39 -0.02 1.11 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.08 4.08 5.87 -2.39 -0.01 4.06 16 45 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 46 H 0.39 9.78 9.12 -74.06 -0.68 9.11 16 47 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.11 0.63 7.53 -2.39 -0.02 0.61 16 49 H 0.10 0.18 8.14 -2.39 -0.02 0.17 16 50 H 0.12 0.21 5.93 -2.39 -0.01 0.19 16 Total: -1.00 -80.51 395.38 -1.33 -81.84 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.45 Total: 20.91 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 6.24 Total: 23.15 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -7.04 Total: -114.81 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -2.11 Total: -56.85 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -80.51 -1.33 -81.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958657888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.394 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds