Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21276 * 119.99969 * 2 1 4 4 N 1.34776 * 120.00104 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.63175 * 179.97438 * 4 2 1 6 6 C 1.53191 * 108.77708 * 233.63327 * 5 4 2 7 7 C 1.53043 * 109.31012 * 305.36430 * 6 5 4 8 8 C 1.50694 * 109.45857 * 181.38554 * 7 6 5 9 9 O 1.21286 * 120.00179 * 359.97025 * 8 7 6 10 10 N 1.34775 * 120.00469 * 179.97438 * 8 7 6 11 11 C 1.46494 * 120.00624 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47236 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.64297 * 51.85989 * 12 11 10 14 14 C 1.54320 * 110.87447 * 288.61057 * 12 11 10 15 15 N 1.47021 * 107.27383 * 219.37534 * 14 12 11 16 16 C 1.36938 * 125.64914 * 178.98179 * 15 14 12 17 17 H 1.08001 * 120.00246 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99797 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00348 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00036 * 179.97438 * 18 16 15 21 21 H 1.48510 * 109.46969 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47312 * 119.99290 * 20 18 16 23 23 H 1.48494 * 109.47552 * 239.99733 * 20 18 16 24 24 C 1.47524 * 108.71517 * 358.94187 * 15 14 12 25 25 C 1.54909 * 104.78429 * 24.11927 * 24 15 14 26 26 H 1.08994 * 111.00706 * 204.89829 * 25 24 15 27 27 O 1.42905 * 111.00086 * 81.08726 * 25 24 15 28 28 C 1.53041 * 109.52516 * 61.37432 * 7 6 5 29 29 C 1.46924 * 120.63012 * 0.02562 * 4 2 1 30 30 H 1.08997 * 109.46761 * 240.00186 * 1 2 3 31 31 H 1.08996 * 109.46941 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.46777 * 120.00442 * 1 2 3 33 33 H 1.09006 * 109.58479 * 113.84162 * 5 4 2 34 34 H 1.08997 * 109.70064 * 353.49477 * 5 4 2 35 35 H 1.09002 * 109.49619 * 185.41684 * 6 5 4 36 36 H 1.09001 * 109.52381 * 65.33080 * 6 5 4 37 37 H 1.08995 * 109.46233 * 301.36181 * 7 6 5 38 38 H 0.97002 * 119.99722 * 359.97438 * 10 8 7 39 39 H 1.09008 * 109.47076 * 59.99893 * 11 10 8 40 40 H 1.09002 * 109.47357 * 300.00246 * 11 10 8 41 41 H 1.09008 * 109.88384 * 338.78996 * 14 12 11 42 42 H 1.09003 * 109.88291 * 99.80063 * 14 12 11 43 43 H 0.96997 * 120.00037 * 180.02562 * 19 18 16 44 44 H 1.09004 * 110.36953 * 265.31028 * 24 15 14 45 45 H 1.09001 * 110.41107 * 142.95306 * 24 15 14 46 46 H 0.96696 * 114.00036 * 64.58481 * 27 25 24 47 47 H 1.08994 * 109.50009 * 58.58045 * 28 7 6 48 48 H 1.09006 * 109.49540 * 178.67822 * 28 7 6 49 49 H 1.08999 * 109.59073 * 246.15791 * 29 4 2 50 50 H 1.09002 * 109.58559 * 6.44669 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6501 -1.1834 0.0000 6 6 4.1333 -2.0495 -1.1675 7 6 3.4895 -3.4346 -1.0705 8 6 3.9888 -4.3004 -2.1982 9 8 4.7809 -3.8538 -3.0008 10 7 3.5552 -5.5711 -2.3152 11 6 4.0401 -6.4127 -3.4119 12 6 3.3977 -7.7978 -3.3143 13 1 2.3138 -7.7141 -3.2356 14 6 3.9724 -8.5875 -2.1195 15 7 4.1303 -9.9832 -2.5540 16 6 4.6311 -11.0046 -1.7917 17 1 4.9507 -10.8151 -0.7776 18 6 4.7289 -12.2834 -2.3227 19 7 4.3398 -12.5143 -3.5587 20 14 5.4127 -13.6767 -1.2831 21 1 5.7764 -13.1592 0.0605 22 1 4.3856 -14.7400 -1.1431 23 1 6.6201 -14.2382 -1.9403 24 6 3.6590 -10.1015 -3.9469 25 6 3.7937 -8.6736 -4.5324 26 1 3.1025 -8.5247 -5.3619 27 8 5.1389 -8.4107 -4.9366 28 6 1.9681 -3.2993 -1.1666 29 6 1.4604 -2.4476 0.0005 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3633 1.0276 -0.0005 32 1 -0.3632 -0.5139 -0.8899 33 1 4.0113 -1.6018 0.9395 34 1 4.0287 -0.1680 -0.1171 35 1 5.2179 -2.1485 -1.1226 36 1 3.8493 -1.5816 -2.1102 37 1 3.7538 -3.8919 -0.1171 38 1 2.9219 -5.9285 -1.6732 39 1 5.1238 -6.5095 -3.3438 40 1 3.7754 -5.9554 -4.3653 41 1 4.9409 -8.1762 -1.8346 42 1 3.2848 -8.5352 -1.2753 43 1 4.4079 -13.4080 -3.9296 44 1 2.6179 -10.4239 -3.9691 45 1 4.2852 -10.7998 -4.5021 46 1 5.4474 -8.9689 -5.6634 47 1 1.7043 -2.8193 -2.1090 48 1 1.5114 -4.2880 -1.1210 49 1 1.6425 -2.9695 0.9400 50 1 0.3919 -2.2656 -0.1152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958657889.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -100.059117 kcal Electronic energy + Delta-G solvation = -30063.371826 eV Core-core repulsion = 25897.956246 eV Total energy + Delta-G solvation = -4165.415580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.76778 -39.69411 -38.36657 -37.26938 -34.93839 -34.55570 -33.49464 -32.30772 -31.78571 -29.87514 -29.65641 -27.83450 -26.41592 -25.24846 -23.68178 -23.45949 -21.87794 -20.66696 -20.10691 -19.67597 -19.28221 -17.71667 -17.34064 -16.93364 -16.39809 -16.23486 -15.86543 -15.67432 -15.29948 -14.90444 -14.55205 -14.40001 -14.11464 -14.00828 -13.83024 -13.65307 -13.62198 -13.06272 -12.96460 -12.71079 -12.61370 -12.53012 -12.36896 -12.08935 -11.95949 -11.67272 -11.42106 -11.29720 -11.13473 -11.04361 -10.85759 -10.69188 -10.40819 -10.23434 -10.14772 -10.03576 -9.88238 -9.68225 -9.15702 -9.05612 -8.93112 -8.73132 -6.89284 -5.73749 -3.13847 2.26644 2.58341 2.65530 3.19579 3.35121 3.41002 3.43193 4.11889 4.24349 4.36074 4.42227 4.46401 4.65014 4.70996 4.78879 4.86153 4.93063 4.93699 5.03352 5.08817 5.14201 5.26103 5.28018 5.32128 5.36422 5.41504 5.46824 5.49046 5.57712 5.64619 5.69830 5.86759 5.98185 6.03279 6.08284 6.13618 6.30716 6.38967 6.47006 6.61187 6.80617 7.00010 7.23164 7.53209 7.53564 7.70511 7.80117 8.19006 8.24820 8.33485 9.13814 9.75315 10.38992 11.31269 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020919 B = 0.002077 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.168644 B =13479.734127 C =13955.304594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.615 5.615 5 C 0.110 3.890 6 C -0.113 4.113 7 C -0.108 4.108 8 C 0.514 3.486 9 O -0.540 6.540 10 N -0.726 5.726 11 C 0.140 3.860 12 C -0.105 4.105 13 H 0.085 0.915 14 C 0.146 3.854 15 N -0.598 5.598 16 C -0.218 4.218 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.925 5.925 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.126 3.874 25 C 0.081 3.919 26 H 0.054 0.946 27 O -0.558 6.558 28 C -0.128 4.128 29 C 0.108 3.892 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.399 0.601 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.028 0.972 42 H 0.018 0.982 43 H 0.252 0.748 44 H 0.019 0.981 45 H 0.112 0.888 46 H 0.376 0.624 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.630 18.998 4.978 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.426 6.426 4 N -0.349 5.349 5 C -0.013 4.013 6 C -0.151 4.151 7 C -0.130 4.130 8 C 0.300 3.700 9 O -0.417 6.417 10 N -0.377 5.377 11 C 0.017 3.983 12 C -0.124 4.124 13 H 0.103 0.897 14 C 0.019 3.981 15 N -0.324 5.324 16 C -0.346 4.346 17 H 0.096 0.904 18 C -0.208 4.208 19 N -0.575 5.575 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.001 3.999 25 C 0.021 3.979 26 H 0.072 0.928 27 O -0.364 6.364 28 C -0.166 4.166 29 C -0.015 4.015 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.232 0.768 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.129 0.871 46 H 0.223 0.777 47 H 0.094 0.906 48 H 0.103 0.897 49 H 0.094 0.906 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.726 20.094 4.875 22.443 hybrid contribution -0.083 -1.693 0.382 1.738 sum -8.810 18.401 5.257 21.067 Atomic orbital electron populations 1.21952 0.91777 1.05501 1.04181 1.20836 0.90682 0.82998 0.75351 1.90717 1.70802 1.31072 1.49988 1.48200 1.07138 1.06036 1.73524 1.21663 0.79125 1.02154 0.98314 1.21726 1.01318 0.93002 0.99096 1.21341 0.96385 0.96541 0.98689 1.20489 0.81243 0.82102 0.86206 1.90715 1.34243 1.73282 1.43495 1.46155 1.47479 1.12608 1.31470 1.21227 1.00007 0.88393 0.88643 1.22492 0.99462 0.93289 0.97206 0.89723 1.21303 0.97077 0.86299 0.93372 1.44380 1.73870 1.03127 1.11017 1.19130 1.33549 0.86894 0.95075 0.90420 1.24771 1.01708 0.97479 0.96832 1.69750 1.53619 1.20319 1.13776 0.85977 0.78253 0.82041 0.79099 1.20530 1.21771 1.21713 1.22618 0.98621 0.92019 0.86683 1.23205 0.83210 0.97506 0.93999 0.92838 1.86385 1.29419 1.63454 1.57094 1.21932 0.93929 1.01108 0.99663 1.21781 0.97002 0.83870 0.98841 0.89323 0.89015 0.89282 0.91250 0.88617 0.89657 0.90700 0.88159 0.76750 0.90318 0.91838 0.95445 0.96380 0.93765 0.96295 0.87056 0.77730 0.90643 0.89736 0.90630 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 8.67 36.01 0.31 -0.55 16 2 C 0.51 4.69 7.81 -10.98 -0.09 4.61 16 3 O -0.55 -7.47 16.50 5.56 0.09 -7.38 16 4 N -0.61 -4.68 2.97 -172.79 -0.51 -5.20 16 5 C 0.11 0.91 6.43 -3.71 -0.02 0.88 16 6 C -0.11 -1.04 4.65 -26.61 -0.12 -1.17 16 7 C -0.11 -0.90 2.49 -91.73 -0.23 -1.13 16 8 C 0.51 6.42 7.15 -10.99 -0.08 6.34 16 9 O -0.54 -9.14 15.98 5.55 0.09 -9.06 16 10 N -0.73 -8.62 5.36 -60.30 -0.32 -8.95 16 11 C 0.14 2.11 4.51 -4.05 -0.02 2.09 16 12 C -0.11 -1.69 2.88 -88.78 -0.26 -1.94 16 13 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 14 C 0.15 2.87 6.76 -3.07 -0.02 2.85 16 15 N -0.60 -14.76 3.40 -169.99 -0.58 -15.34 16 16 C -0.22 -5.95 10.27 -15.06 -0.15 -6.10 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 19 N -0.93 -26.11 10.09 55.49 0.56 -25.55 16 20 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 C 0.13 2.87 5.63 -2.47 -0.01 2.86 16 25 C 0.08 1.45 4.16 -24.58 -0.10 1.35 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 O -0.56 -10.14 12.34 -35.23 -0.43 -10.58 16 28 C -0.13 -0.76 5.27 -26.63 -0.14 -0.90 16 29 C 0.11 0.51 6.34 -3.73 -0.02 0.48 16 30 H 0.09 0.26 7.94 -51.93 -0.41 -0.15 16 31 H 0.09 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.09 0.30 7.69 -51.93 -0.40 -0.10 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.95 7.01 -51.93 -0.36 0.58 16 35 H 0.08 0.85 8.07 -51.93 -0.42 0.43 16 36 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 3.72 7.87 -40.82 -0.32 3.39 16 39 H 0.08 1.42 7.53 -51.92 -0.39 1.03 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.58 7.69 -51.92 -0.40 0.18 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.11 2.86 5.88 -51.93 -0.31 2.56 16 46 H 0.38 5.64 9.12 45.56 0.42 6.05 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.38 7.53 -51.93 -0.39 -0.01 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.25 5.93 -51.93 -0.31 -0.06 16 LS Contribution 393.93 15.07 5.94 5.94 Total: -1.00 -36.04 393.93 -8.74 -44.77 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.49 Total: 5.46 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.05 Total: 9.22 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.85 Total: -55.04 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.25 Total: -27.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.04 -8.74 -44.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958657889.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.285 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds