Wall clock time and date at job start Sat Apr 11 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99989 * 2 1 4 4 H 1.08997 * 110.91589 * 26.09420 * 3 2 1 5 5 C 1.55155 * 111.00226 * 150.00067 * 3 2 1 6 6 C 1.54330 * 102.94043 * 153.57461 * 5 3 2 7 7 H 1.08998 * 109.87842 * 218.23375 * 6 5 3 8 8 C 1.50700 * 109.87985 * 97.22400 * 6 5 3 9 9 O 1.21280 * 119.99634 * 260.31029 * 8 6 5 10 10 N 1.34776 * 120.00070 * 80.31883 * 8 6 5 11 11 C 1.47748 * 125.82163 * 359.90285 * 10 8 6 12 12 C 1.54905 * 104.83749 * 155.83375 * 11 10 8 13 13 C 1.55152 * 101.58690 * 37.09276 * 12 11 10 14 14 H 1.09004 * 110.86942 * 82.92978 * 13 12 11 15 15 N 1.46496 * 110.72122 * 206.13377 * 13 12 11 16 16 C 1.46499 * 120.00158 * 53.52675 * 15 13 12 17 17 C 1.36946 * 120.00014 * 233.51862 * 15 13 12 18 18 H 1.07996 * 119.99778 * 23.88986 * 17 15 13 19 19 C 1.38810 * 119.99817 * 203.88917 * 17 15 13 20 20 N 1.31618 * 120.00311 * 10.81530 * 19 17 15 21 21 Si 1.86807 * 119.99721 * 190.80875 * 19 17 15 22 22 H 1.48500 * 109.46937 * 90.00212 * 21 19 17 23 23 H 1.48499 * 109.47167 * 209.99925 * 21 19 17 24 24 H 1.48496 * 109.47160 * 330.00600 * 21 19 17 25 25 C 1.47018 * 125.64511 * 179.97438 * 10 8 6 26 26 N 1.47017 * 107.39955 * 337.72856 * 6 5 3 27 27 C 1.34785 * 125.64839 * 178.98041 * 26 6 5 28 28 C 1.50697 * 120.00244 * 179.97438 * 27 26 6 29 29 O 1.21285 * 119.99496 * 359.97438 * 27 26 6 30 30 C 1.47732 * 108.53855 * 359.06894 * 26 6 5 31 31 H 1.09004 * 109.47454 * 60.00034 * 1 2 3 32 32 H 1.08993 * 109.47182 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47119 * 300.00254 * 1 2 3 34 34 H 1.09001 * 110.72340 * 35.21406 * 5 3 2 35 35 H 1.09000 * 110.72369 * 271.93606 * 5 3 2 36 36 H 1.08997 * 110.29078 * 37.02337 * 11 10 8 37 37 H 1.08995 * 110.52469 * 274.75480 * 11 10 8 38 38 H 1.09002 * 111.00792 * 279.01670 * 12 11 10 39 39 H 1.09006 * 111.00123 * 155.16878 * 12 11 10 40 40 H 1.08991 * 109.47535 * 95.03352 * 16 15 13 41 41 H 1.09004 * 109.47014 * 215.03630 * 16 15 13 42 42 H 1.09003 * 109.46777 * 335.02946 * 16 15 13 43 43 H 0.97000 * 119.99832 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.88634 * 61.60857 * 25 10 8 45 45 H 1.09001 * 109.88531 * 300.59201 * 25 10 8 46 46 H 1.09006 * 109.46534 * 90.00389 * 28 27 26 47 47 H 1.08997 * 109.47006 * 209.99781 * 28 27 26 48 48 H 1.08997 * 109.47433 * 330.00703 * 28 27 26 49 49 H 1.09003 * 110.28825 * 265.17413 * 30 26 6 50 50 H 1.09000 * 110.38259 * 142.89312 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0329 0.4478 5 6 3.3824 1.3033 0.7242 6 6 4.1233 2.4855 0.0645 7 1 5.1753 2.2346 -0.0706 8 6 3.9964 3.7151 0.9265 9 8 3.1746 4.5644 0.6542 10 7 4.7964 3.8710 1.9999 11 6 5.8352 2.9214 2.4494 12 6 6.8344 3.7820 3.2621 13 6 5.8807 4.7759 3.9762 14 1 5.4607 4.3309 4.8783 15 7 6.5767 6.0255 4.2925 16 6 7.2785 6.7605 3.2373 17 6 6.5710 6.5068 5.5746 18 1 6.4138 5.8328 6.4036 19 6 6.7675 7.8609 5.8084 20 7 6.7464 8.7120 4.8047 21 14 7.0615 8.4753 7.5479 22 1 8.5183 8.4679 7.8358 23 1 6.5379 9.8587 7.6794 24 1 6.3621 7.5875 8.5112 25 6 4.7797 5.0161 2.9218 26 7 3.4942 2.7242 -1.2427 27 6 3.8434 3.6875 -2.1184 28 6 3.1093 3.8174 -3.4280 29 8 4.7484 4.4498 -1.8521 30 6 2.4155 1.7329 -1.4328 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 3.9119 0.3677 0.5444 35 1 3.2548 1.4762 1.7928 36 1 6.3331 2.4714 1.5905 37 1 5.3986 2.1484 3.0817 38 1 7.5240 4.3081 2.6020 39 1 7.3766 3.1727 3.9854 40 1 6.6228 7.5322 2.8342 41 1 8.1738 7.2243 3.6514 42 1 7.5612 6.0717 2.4412 43 1 6.8841 9.6582 4.9681 44 1 3.8077 5.0849 3.4101 45 1 4.9851 5.9359 2.3741 46 1 2.2617 4.4916 -3.3040 47 1 3.7842 4.2177 -4.1846 48 1 2.7510 2.8373 -3.7425 49 1 2.7852 0.8749 -1.9943 50 1 1.5686 2.1873 -1.9470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972017895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:17 Heat of formation + Delta-G solvation = -65.619261 kcal Electronic energy + Delta-G solvation = -31234.926247 eV Core-core repulsion = 27071.004091 eV Total energy + Delta-G solvation = -4163.922156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.91086 -39.13610 -38.53314 -37.33329 -36.19759 -34.74681 -32.27597 -31.49084 -29.97759 -29.66290 -29.06512 -27.62523 -26.87607 -25.99935 -24.43919 -23.16283 -22.38721 -21.76915 -20.26956 -19.15770 -18.72925 -17.70647 -17.18090 -16.99812 -16.71082 -15.98392 -15.75360 -15.49278 -15.17360 -15.06747 -14.84477 -14.59969 -13.88281 -13.76008 -13.41939 -13.31829 -13.21385 -13.12499 -12.92523 -12.74555 -12.52640 -12.21698 -12.19030 -12.10267 -12.01134 -11.82771 -11.72498 -11.46544 -11.18387 -10.88229 -10.80855 -10.52185 -10.39531 -10.25197 -10.21699 -9.91501 -9.85515 -9.80054 -9.71803 -8.78653 -8.55808 -8.24765 -6.77805 -5.72786 -3.22701 2.40135 2.64832 2.89148 3.22867 3.37958 3.41457 3.44690 3.46005 4.00902 4.14556 4.45818 4.51189 4.62392 4.66634 4.81765 4.90958 4.95798 5.00556 5.01853 5.05666 5.18947 5.20908 5.27883 5.29535 5.34441 5.38951 5.45588 5.49284 5.56623 5.59997 5.65721 5.79713 5.90495 5.97347 6.03353 6.37218 6.42147 6.57229 6.69816 6.72185 6.90075 6.91740 7.28424 7.39365 7.76824 7.81946 7.85150 8.07403 8.37672 8.44935 9.21366 9.83425 10.33177 11.30996 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.002772 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.970890 B =10097.247564 C =10890.189897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.373 6.373 3 C 0.075 3.925 4 H 0.086 0.914 5 C -0.116 4.116 6 C 0.123 3.877 7 H 0.101 0.899 8 C 0.521 3.479 9 O -0.533 6.533 10 N -0.610 5.610 11 C 0.099 3.901 12 C -0.154 4.154 13 C 0.174 3.826 14 H 0.078 0.922 15 N -0.586 5.586 16 C 0.160 3.840 17 C -0.262 4.262 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.903 5.903 21 Si 0.908 3.092 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.088 3.912 26 N -0.603 5.603 27 C 0.532 3.468 28 C -0.166 4.166 29 O -0.526 6.526 30 C 0.086 3.914 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.043 0.957 42 H 0.003 0.997 43 H 0.254 0.746 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.003 -20.815 -13.520 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.016 3.984 4 H 0.104 0.896 5 C -0.154 4.154 6 C 0.016 3.984 7 H 0.118 0.882 8 C 0.307 3.693 9 O -0.410 6.410 10 N -0.344 5.344 11 C -0.024 4.024 12 C -0.194 4.194 13 C 0.063 3.937 14 H 0.096 0.904 15 N -0.306 5.306 16 C 0.015 3.985 17 C -0.392 4.392 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.738 3.262 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.036 4.036 26 N -0.340 5.340 27 C 0.321 3.679 28 C -0.225 4.225 29 O -0.401 6.401 30 C -0.038 4.038 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.064 0.936 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.101 0.899 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.830 -19.798 -13.653 25.981 hybrid contribution -0.141 0.720 0.868 1.137 sum -9.971 -19.078 -12.785 25.037 Atomic orbital electron populations 1.22871 0.80456 1.03059 1.00447 1.87904 1.20181 1.26183 1.94751 1.23251 0.95150 0.85475 0.94485 0.89602 1.22679 0.94600 0.97415 1.00704 1.21461 0.99529 0.93456 0.83981 0.88155 1.20230 0.80951 0.87841 0.80264 1.90678 1.36370 1.43705 1.70225 1.48584 1.35790 1.23108 1.26933 1.22422 0.89165 0.92496 0.98302 1.23345 0.98150 0.98341 0.99517 1.21353 0.89672 0.88310 0.94332 0.90364 1.43917 1.56995 1.22796 1.06878 1.20817 0.96220 0.92806 0.88610 1.19225 1.45681 0.90987 0.83262 0.91193 1.25114 1.00979 0.95949 0.97372 1.70077 1.53176 1.01977 1.29509 0.86210 0.77937 0.78025 0.84053 1.21437 1.21723 1.20433 1.22932 1.00713 0.88647 0.91354 1.48222 1.35919 1.32938 1.16959 1.20491 0.83738 0.78425 0.85222 1.21862 1.02296 1.03981 0.94361 1.90790 1.30802 1.40948 1.77562 1.22769 0.90578 0.92257 0.98177 0.93760 0.89261 0.93589 0.88127 0.88832 0.91460 0.91411 0.90302 0.90326 0.94995 0.93792 0.97897 0.93600 0.92424 0.90969 0.88678 0.88737 0.90323 0.89880 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.85 101.05 1.10 1.26 16 2 O -0.37 -3.06 10.51 -35.23 -0.37 -3.43 16 3 C 0.08 0.67 3.55 -24.58 -0.09 0.58 16 4 H 0.09 0.85 7.83 -51.93 -0.41 0.44 16 5 C -0.12 -1.08 6.22 -24.89 -0.15 -1.23 16 6 C 0.12 1.58 2.68 -68.10 -0.18 1.39 16 7 H 0.10 1.22 6.98 -51.93 -0.36 0.86 16 8 C 0.52 9.12 6.21 -10.99 -0.07 9.05 16 9 O -0.53 -11.50 16.28 5.56 0.09 -11.41 16 10 N -0.61 -10.49 3.34 -170.27 -0.57 -11.05 16 11 C 0.10 1.33 6.71 -2.35 -0.02 1.31 16 12 C -0.15 -2.48 6.59 -24.59 -0.16 -2.64 16 13 C 0.17 3.50 3.45 -66.10 -0.23 3.27 16 14 H 0.08 1.52 7.93 -51.93 -0.41 1.11 16 15 N -0.59 -14.63 2.93 -171.39 -0.50 -15.13 16 16 C 0.16 4.05 7.80 59.85 0.47 4.52 16 17 C -0.26 -7.13 9.61 -15.06 -0.14 -7.28 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C 0.00 0.14 5.14 -17.43 -0.09 0.05 16 20 N -0.90 -26.73 10.64 55.49 0.59 -26.14 16 21 Si 0.91 21.86 29.57 -169.99 -5.03 16.83 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 C 0.09 1.81 6.50 -3.06 -0.02 1.79 16 26 N -0.60 -7.44 2.80 -164.07 -0.46 -7.90 16 27 C 0.53 7.60 7.30 -10.98 -0.08 7.52 16 28 C -0.17 -1.48 9.68 36.00 0.35 -1.13 16 29 O -0.53 -10.31 16.71 5.55 0.09 -10.21 16 30 C 0.09 0.72 6.02 -2.36 -0.01 0.70 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.89 7.82 -51.93 -0.41 0.49 16 36 H 0.07 0.77 6.97 -51.93 -0.36 0.41 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.40 6.05 -51.93 -0.31 1.08 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.90 7.26 -51.93 -0.38 0.52 16 41 H 0.04 1.18 7.34 -51.93 -0.38 0.80 16 42 H 0.00 0.06 6.03 -51.93 -0.31 -0.25 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.07 1.76 7.13 -51.93 -0.37 1.39 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.08 0.46 7.20 -51.93 -0.37 0.09 16 49 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.08 0.55 7.58 -51.93 -0.39 0.16 16 LS Contribution 396.05 15.07 5.97 5.97 Total: -1.00 -36.82 396.05 -7.76 -44.58 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.24 Total: -1.27 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 0.66 Total: 19.16 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.94 Total: -60.23 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.19 Total: -25.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.82 -7.76 -44.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972017895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.037 kcal (2) G-P(sol) polarization free energy of solvation -36.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds