Wall clock time and date at job start Sat Apr 11 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99989 * 2 1 4 4 H 1.08997 * 110.91589 * 26.09420 * 3 2 1 5 5 C 1.55155 * 111.00226 * 150.00067 * 3 2 1 6 6 C 1.54330 * 102.94043 * 153.57461 * 5 3 2 7 7 H 1.08998 * 109.87842 * 218.23375 * 6 5 3 8 8 C 1.50700 * 109.87985 * 97.22400 * 6 5 3 9 9 O 1.21280 * 119.99634 * 260.31029 * 8 6 5 10 10 N 1.34776 * 120.00070 * 80.31883 * 8 6 5 11 11 C 1.47748 * 125.82163 * 359.90285 * 10 8 6 12 12 C 1.54905 * 104.83749 * 155.83375 * 11 10 8 13 13 C 1.55152 * 101.58690 * 37.09276 * 12 11 10 14 14 H 1.09004 * 110.86942 * 82.92978 * 13 12 11 15 15 N 1.46496 * 110.72122 * 206.13377 * 13 12 11 16 16 C 1.46499 * 120.00158 * 53.52675 * 15 13 12 17 17 C 1.36946 * 120.00014 * 233.51862 * 15 13 12 18 18 H 1.07996 * 119.99778 * 23.88986 * 17 15 13 19 19 C 1.38810 * 119.99817 * 203.88917 * 17 15 13 20 20 N 1.31618 * 120.00311 * 10.81530 * 19 17 15 21 21 Si 1.86807 * 119.99721 * 190.80875 * 19 17 15 22 22 H 1.48500 * 109.46937 * 90.00212 * 21 19 17 23 23 H 1.48499 * 109.47167 * 209.99925 * 21 19 17 24 24 H 1.48496 * 109.47160 * 330.00600 * 21 19 17 25 25 C 1.47018 * 125.64511 * 179.97438 * 10 8 6 26 26 N 1.47017 * 107.39955 * 337.72856 * 6 5 3 27 27 C 1.34785 * 125.64839 * 178.98041 * 26 6 5 28 28 C 1.50697 * 120.00244 * 179.97438 * 27 26 6 29 29 O 1.21285 * 119.99496 * 359.97438 * 27 26 6 30 30 C 1.47732 * 108.53855 * 359.06894 * 26 6 5 31 31 H 1.09004 * 109.47454 * 60.00034 * 1 2 3 32 32 H 1.08993 * 109.47182 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47119 * 300.00254 * 1 2 3 34 34 H 1.09001 * 110.72340 * 35.21406 * 5 3 2 35 35 H 1.09000 * 110.72369 * 271.93606 * 5 3 2 36 36 H 1.08997 * 110.29078 * 37.02337 * 11 10 8 37 37 H 1.08995 * 110.52469 * 274.75480 * 11 10 8 38 38 H 1.09002 * 111.00792 * 279.01670 * 12 11 10 39 39 H 1.09006 * 111.00123 * 155.16878 * 12 11 10 40 40 H 1.08991 * 109.47535 * 95.03352 * 16 15 13 41 41 H 1.09004 * 109.47014 * 215.03630 * 16 15 13 42 42 H 1.09003 * 109.46777 * 335.02946 * 16 15 13 43 43 H 0.97000 * 119.99832 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.88634 * 61.60857 * 25 10 8 45 45 H 1.09001 * 109.88531 * 300.59201 * 25 10 8 46 46 H 1.09006 * 109.46534 * 90.00389 * 28 27 26 47 47 H 1.08997 * 109.47006 * 209.99781 * 28 27 26 48 48 H 1.08997 * 109.47433 * 330.00703 * 28 27 26 49 49 H 1.09003 * 110.28825 * 265.17413 * 30 26 6 50 50 H 1.09000 * 110.38259 * 142.89312 * 30 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3332 2.0329 0.4478 5 6 3.3824 1.3033 0.7242 6 6 4.1233 2.4855 0.0645 7 1 5.1753 2.2346 -0.0706 8 6 3.9964 3.7151 0.9265 9 8 3.1746 4.5644 0.6542 10 7 4.7964 3.8710 1.9999 11 6 5.8352 2.9214 2.4494 12 6 6.8344 3.7820 3.2621 13 6 5.8807 4.7759 3.9762 14 1 5.4607 4.3309 4.8783 15 7 6.5767 6.0255 4.2925 16 6 7.2785 6.7605 3.2373 17 6 6.5710 6.5068 5.5746 18 1 6.4138 5.8328 6.4036 19 6 6.7675 7.8609 5.8084 20 7 6.7464 8.7120 4.8047 21 14 7.0615 8.4753 7.5479 22 1 8.5183 8.4679 7.8358 23 1 6.5379 9.8587 7.6794 24 1 6.3621 7.5875 8.5112 25 6 4.7797 5.0161 2.9218 26 7 3.4942 2.7242 -1.2427 27 6 3.8434 3.6875 -2.1184 28 6 3.1093 3.8174 -3.4280 29 8 4.7484 4.4498 -1.8521 30 6 2.4155 1.7329 -1.4328 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 3.9119 0.3677 0.5444 35 1 3.2548 1.4762 1.7928 36 1 6.3331 2.4714 1.5905 37 1 5.3986 2.1484 3.0817 38 1 7.5240 4.3081 2.6020 39 1 7.3766 3.1727 3.9854 40 1 6.6228 7.5322 2.8342 41 1 8.1738 7.2243 3.6514 42 1 7.5612 6.0717 2.4412 43 1 6.8841 9.6582 4.9681 44 1 3.8077 5.0849 3.4101 45 1 4.9851 5.9359 2.3741 46 1 2.2617 4.4916 -3.3040 47 1 3.7842 4.2177 -4.1846 48 1 2.7510 2.8373 -3.7425 49 1 2.7852 0.8749 -1.9943 50 1 1.5686 2.1873 -1.9470 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972017895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:16 Heat of formation + Delta-G solvation = -92.948474 kcal Electronic energy + Delta-G solvation = -31236.111331 eV Core-core repulsion = 27071.004091 eV Total energy + Delta-G solvation = -4165.107239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.98364 -40.44614 -39.37006 -38.78978 -37.15035 -36.57001 -33.67237 -32.91750 -31.35836 -30.67733 -30.05581 -29.02195 -28.10599 -27.35869 -25.74162 -24.49849 -23.86007 -22.60691 -21.39623 -20.80408 -19.84914 -18.99931 -18.65316 -18.22876 -17.74126 -17.36317 -16.85059 -16.59283 -16.50510 -16.05570 -15.89043 -15.70843 -15.37213 -15.09417 -14.84077 -14.58848 -14.45642 -14.17825 -13.97768 -13.83479 -13.77471 -13.54433 -13.34450 -13.18779 -13.14631 -13.05464 -12.77109 -12.66263 -12.54546 -12.43099 -12.35848 -12.23596 -12.10736 -11.92657 -11.82196 -11.44623 -11.16347 -11.07397 -10.67370 -10.62523 -9.83652 -9.70235 -8.85059 -7.85367 -5.38466 1.32854 1.46248 1.47756 1.55209 1.56951 1.78208 2.03192 2.49256 2.70921 3.24784 3.27784 3.37612 3.40242 3.54906 3.78060 3.80635 3.95402 4.03606 4.06281 4.21886 4.25445 4.32937 4.40767 4.42928 4.45858 4.54972 4.57784 4.61376 4.62953 4.72468 4.73769 4.78325 4.84809 4.86636 4.92300 4.95071 5.00087 5.05620 5.14941 5.20969 5.27055 5.40334 5.61729 5.64397 6.13306 6.28455 6.33845 6.51555 7.00971 7.08679 7.11695 7.79462 8.26156 9.17805 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.002772 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.970890 B =10097.247564 C =10890.189897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.377 6.377 3 C 0.078 3.922 4 H 0.069 0.931 5 C -0.107 4.107 6 C 0.126 3.874 7 H 0.111 0.889 8 C 0.512 3.488 9 O -0.586 6.586 10 N -0.612 5.612 11 C 0.103 3.897 12 C -0.142 4.142 13 C 0.168 3.832 14 H 0.091 0.909 15 N -0.601 5.601 16 C 0.182 3.818 17 C -0.266 4.266 18 H 0.084 0.916 19 C -0.057 4.057 20 N -0.943 5.943 21 Si 0.977 3.023 22 H -0.284 1.284 23 H -0.300 1.300 24 H -0.262 1.262 25 C 0.101 3.899 26 N -0.605 5.605 27 C 0.517 3.483 28 C -0.157 4.157 29 O -0.595 6.595 30 C 0.084 3.916 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.042 0.958 34 H 0.131 0.869 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.108 0.892 40 H -0.009 1.009 41 H 0.021 0.979 42 H 0.026 0.974 43 H 0.247 0.753 44 H 0.044 0.956 45 H 0.020 0.980 46 H 0.101 0.899 47 H 0.097 0.903 48 H 0.117 0.883 49 H 0.110 0.890 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 -25.252 -13.640 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.295 6.295 3 C 0.019 3.981 4 H 0.087 0.913 5 C -0.145 4.145 6 C 0.018 3.982 7 H 0.129 0.871 8 C 0.301 3.699 9 O -0.466 6.466 10 N -0.346 5.346 11 C -0.018 4.018 12 C -0.181 4.181 13 C 0.059 3.941 14 H 0.109 0.891 15 N -0.322 5.322 16 C 0.037 3.963 17 C -0.396 4.396 18 H 0.101 0.899 19 C -0.252 4.252 20 N -0.590 5.590 21 Si 0.804 3.196 22 H -0.210 1.210 23 H -0.227 1.227 24 H -0.186 1.186 25 C -0.026 4.026 26 N -0.340 5.340 27 C 0.309 3.691 28 C -0.216 4.216 29 O -0.475 6.475 30 C -0.038 4.038 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.149 0.851 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.126 0.874 40 H 0.009 0.991 41 H 0.039 0.961 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.039 0.961 46 H 0.119 0.881 47 H 0.116 0.884 48 H 0.135 0.865 49 H 0.128 0.872 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.463 -24.358 -13.770 29.874 hybrid contribution -0.051 2.023 0.875 2.205 sum -10.514 -22.335 -12.896 27.851 Atomic orbital electron populations 1.23063 0.79213 1.04326 1.00896 1.87888 1.21494 1.25286 1.94789 1.23104 0.94736 0.85651 0.94589 0.91295 1.22716 0.94705 0.96774 1.00295 1.21580 1.00990 0.91939 0.83677 0.87091 1.21266 0.79801 0.88814 0.80066 1.90642 1.38623 1.45903 1.71412 1.48683 1.36728 1.22635 1.26539 1.22711 0.87637 0.91788 0.99694 1.23233 0.97643 0.97615 0.99625 1.21596 0.90303 0.87174 0.95024 0.89096 1.44111 1.57819 1.24113 1.06182 1.20419 0.94361 0.92342 0.89184 1.19685 1.44096 0.91297 0.84522 0.89866 1.25990 1.01601 0.96362 1.01244 1.70288 1.55172 1.01807 1.31710 0.85123 0.77809 0.76948 0.79680 1.21032 1.22714 1.18616 1.22475 1.00196 0.88290 0.91595 1.48417 1.36413 1.32948 1.16192 1.21503 0.83120 0.77619 0.86818 1.21898 1.01822 1.06390 0.91490 1.90752 1.33961 1.43556 1.79217 1.23042 0.90109 0.92181 0.98429 0.92599 0.87597 0.93956 0.85094 0.88920 0.88562 0.87347 0.92229 0.87361 0.99060 0.96054 0.95585 0.94364 0.93766 0.96114 0.88103 0.88442 0.86484 0.87161 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.85 113.37 1.23 1.41 16 2 O -0.38 -4.86 10.51 -148.98 -1.57 -6.43 16 3 C 0.08 1.17 3.55 31.99 0.11 1.29 16 4 H 0.07 1.27 7.83 -2.39 -0.02 1.25 16 5 C -0.11 -1.64 6.22 31.78 0.20 -1.44 16 6 C 0.13 2.99 2.68 44.60 0.12 3.11 16 7 H 0.11 2.41 6.98 -2.39 -0.02 2.39 16 8 C 0.51 18.03 6.21 87.66 0.54 18.57 16 9 O -0.59 -26.44 16.28 -3.03 -0.05 -26.49 16 10 N -0.61 -20.90 3.34 -810.99 -2.71 -23.61 16 11 C 0.10 2.43 6.71 86.79 0.58 3.02 16 12 C -0.14 -4.27 6.59 31.98 0.21 -4.06 16 13 C 0.17 6.72 3.45 46.18 0.16 6.88 16 14 H 0.09 3.41 7.93 -2.38 -0.02 3.39 16 15 N -0.60 -30.78 2.93 -696.16 -2.04 -32.82 16 16 C 0.18 9.74 7.80 127.77 1.00 10.74 16 17 C -0.27 -14.62 9.61 84.03 0.81 -13.82 16 18 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 19 C -0.06 -3.27 5.14 84.86 0.44 -2.84 16 20 N -0.94 -58.54 10.64 21.65 0.23 -58.31 16 21 Si 0.98 45.67 29.57 68.60 2.03 47.70 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 25 C 0.10 4.30 6.50 86.73 0.56 4.86 16 26 N -0.60 -13.90 2.80 -791.37 -2.22 -16.11 16 27 C 0.52 14.60 7.30 87.65 0.64 15.24 16 28 C -0.16 -2.54 9.68 71.23 0.69 -1.85 16 29 O -0.59 -24.21 16.71 -3.04 -0.05 -24.26 16 30 C 0.08 1.12 6.02 86.80 0.52 1.65 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.04 0.39 8.12 -2.39 -0.02 0.37 16 34 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 1.47 7.82 -2.39 -0.02 1.45 16 36 H 0.10 1.81 6.97 -2.39 -0.02 1.79 16 37 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 2.04 6.05 -2.39 -0.01 2.03 16 39 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 40 H -0.01 -0.55 7.26 -2.39 -0.02 -0.57 16 41 H 0.02 1.19 7.34 -2.39 -0.02 1.17 16 42 H 0.03 1.23 6.03 -2.39 -0.01 1.22 16 43 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 44 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.02 1.08 7.13 -2.39 -0.02 1.07 16 46 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 47 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.12 0.94 7.20 -2.39 -0.02 0.92 16 49 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.10 0.99 7.58 -2.39 -0.02 0.98 16 Total: -1.00 -88.23 396.05 2.37 -85.86 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.93 Total: 11.72 kcal Atomic # 6 Polarization: 34.95 SS G_CDS: 7.81 Total: 42.76 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -6.73 Total: -130.85 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -1.67 Total: -57.18 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -88.23 2.37 -85.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972017895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.093 kcal (2) G-P(sol) polarization free energy of solvation -88.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds