Wall clock time and date at job start Sat Apr 11 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00327 * 2 1 4 4 N 1.34776 * 119.99951 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98165 * 0.02562 * 4 2 1 6 6 C 1.53291 * 108.41607 * 129.41864 * 5 4 2 7 7 O 1.43049 * 109.18140 * 52.28982 * 6 5 4 8 8 C 1.42967 * 114.18108 * 297.43777 * 7 6 5 9 9 H 1.09001 * 109.54994 * 302.63015 * 8 7 6 10 10 C 1.50690 * 109.51102 * 182.50849 * 8 7 6 11 11 O 1.21291 * 120.00252 * 355.25029 * 10 8 7 12 12 N 1.34783 * 120.00184 * 175.25520 * 10 8 7 13 13 C 1.46498 * 119.99904 * 179.97438 * 12 10 8 14 14 H 1.08993 * 110.88990 * 325.69369 * 13 12 10 15 15 C 1.54913 * 111.00392 * 89.58183 * 13 12 10 16 16 N 1.47525 * 104.78565 * 81.08646 * 15 13 12 17 17 C 1.36942 * 125.63426 * 204.15586 * 16 15 13 18 18 H 1.08002 * 119.99539 * 161.51945 * 17 16 15 19 19 C 1.38812 * 119.99948 * 341.52109 * 17 16 15 20 20 N 1.31617 * 119.99770 * 157.60513 * 19 17 16 21 21 Si 1.86803 * 119.99920 * 337.60089 * 19 17 16 22 22 H 1.48506 * 109.46844 * 84.54579 * 21 19 17 23 23 H 1.48495 * 109.47047 * 204.54214 * 21 19 17 24 24 H 1.48497 * 109.47189 * 324.54603 * 21 19 17 25 25 C 1.47024 * 108.71623 * 24.11649 * 16 15 13 26 26 C 1.54324 * 107.27140 * 358.94458 * 25 16 15 27 27 C 1.53000 * 110.72041 * 219.44459 * 26 25 16 28 28 C 1.52997 * 110.71928 * 96.16590 * 26 25 16 29 29 C 1.47148 * 120.98423 * 179.97438 * 4 2 1 30 30 H 1.08992 * 109.47337 * 240.00312 * 1 2 3 31 31 H 1.09002 * 109.46857 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47024 * 120.00365 * 1 2 3 33 33 H 1.09000 * 109.68057 * 249.15866 * 5 4 2 34 34 H 1.09002 * 109.67765 * 9.67687 * 5 4 2 35 35 H 1.09007 * 109.51419 * 172.24456 * 6 5 4 36 36 H 1.08998 * 109.51512 * 292.39381 * 6 5 4 37 37 H 0.97000 * 119.99538 * 359.97438 * 12 10 8 38 38 H 1.09010 * 110.36193 * 199.89944 * 15 13 12 39 39 H 1.08998 * 110.36817 * 322.21948 * 15 13 12 40 40 H 0.97002 * 120.00009 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.88252 * 239.52701 * 25 16 15 42 42 H 1.09000 * 110.01078 * 118.43661 * 25 16 15 43 43 H 1.09003 * 109.46922 * 173.52607 * 27 26 25 44 44 H 1.08995 * 109.46973 * 293.51893 * 27 26 25 45 45 H 1.08997 * 109.46920 * 53.51895 * 27 26 25 46 46 H 1.08996 * 109.47644 * 306.48245 * 28 26 25 47 47 H 1.09007 * 109.46721 * 66.47971 * 28 26 25 48 48 H 1.09005 * 109.47191 * 186.47448 * 28 26 25 49 49 H 1.09004 * 109.68184 * 350.28440 * 29 4 2 50 50 H 1.09003 * 109.68465 * 110.84008 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4670 -2.4540 0.0005 6 6 2.0401 -3.3257 -1.1226 7 8 3.4630 -3.3882 -0.9895 8 6 4.1197 -2.1253 -1.1226 9 1 3.8716 -1.6852 -2.0885 10 6 5.6108 -2.3207 -1.0267 11 8 6.0638 -3.4173 -0.7749 12 7 6.4412 -1.2769 -1.2206 13 6 7.8908 -1.4669 -1.1267 14 1 8.1369 -2.2119 -0.3703 15 6 8.4904 -1.8526 -2.5020 16 7 8.6325 -0.5734 -3.2229 17 6 8.6702 -0.4244 -4.5837 18 1 8.4778 0.5417 -5.0266 19 6 8.9556 -1.5149 -5.3937 20 7 8.5759 -1.5159 -6.6539 21 14 9.8786 -2.9811 -4.6951 22 1 8.9195 -3.8969 -4.0266 23 1 10.5670 -3.7026 -5.7954 24 1 10.8827 -2.5094 -3.7081 25 6 8.7261 0.5149 -2.2388 26 6 8.6102 -0.1227 -0.8382 27 6 7.7661 0.7551 0.0880 28 6 9.9963 -0.3685 -0.2389 29 6 3.6521 -1.1925 0.0000 30 1 -0.3633 -0.5137 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 1.6079 -2.9519 0.9599 34 1 0.4043 -2.2842 -0.1724 35 1 1.6226 -4.3303 -1.0529 36 1 1.7836 -2.8903 -2.0884 37 1 6.0789 -0.4000 -1.4222 38 1 9.4641 -2.3252 -2.3722 39 1 7.8134 -2.5178 -3.0379 40 1 8.7756 -2.2778 -7.2201 41 1 7.9126 1.2240 -2.3918 42 1 9.6849 1.0243 -2.3361 43 1 7.6012 0.2345 1.0313 44 1 8.2895 1.6923 0.2769 45 1 6.8063 0.9639 -0.3845 46 1 10.5981 -0.9464 -0.9402 47 1 10.4827 0.5875 -0.0446 48 1 9.8955 -0.9214 0.6951 49 1 4.0365 -0.1874 -0.1741 50 1 4.0133 -1.5632 0.9593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977538336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:36 Heat of formation + Delta-G solvation = -75.270406 kcal Electronic energy + Delta-G solvation = -31764.614229 eV Core-core repulsion = 27600.273569 eV Total energy + Delta-G solvation = -4164.340661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.88215 -39.88222 -38.74223 -37.69596 -35.11325 -34.01254 -33.34680 -32.20620 -31.28636 -30.26729 -28.77852 -27.80771 -26.82962 -26.12680 -24.94121 -23.51483 -22.64245 -20.97639 -20.17613 -19.67805 -18.97257 -17.72199 -17.14446 -16.98618 -16.67987 -16.36247 -15.95658 -15.74511 -15.48357 -15.17450 -14.80696 -14.22918 -14.04132 -13.97964 -13.87418 -13.69901 -13.35092 -13.15726 -13.05237 -12.84394 -12.58430 -12.56636 -12.35405 -12.28984 -12.05696 -11.91249 -11.62609 -11.49916 -11.21352 -11.10092 -10.76745 -10.66333 -10.54408 -10.26031 -10.20587 -10.14870 -10.13843 -9.60466 -9.43522 -8.97362 -8.83343 -8.54777 -7.02006 -5.93100 -3.23164 2.23355 2.40039 2.73350 2.83891 3.42287 3.52110 3.53003 3.83365 4.16138 4.29118 4.47594 4.58193 4.63677 4.64588 4.71323 4.79623 4.82914 4.87733 4.92133 4.96975 5.11502 5.14429 5.16943 5.22254 5.32824 5.45466 5.45954 5.51103 5.55508 5.67026 5.79127 5.87867 5.91177 5.96398 6.07280 6.13567 6.24250 6.37646 6.39114 6.58567 6.62425 6.69604 6.77530 6.88289 6.92549 7.65571 7.74211 7.75702 8.32559 8.37162 8.84458 9.70912 10.18996 11.22888 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003633 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.976533 B = 7704.439397 C = 8369.445957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.514 3.486 3 O -0.539 6.539 4 N -0.618 5.618 5 C 0.071 3.929 6 C 0.044 3.956 7 O -0.347 6.347 8 C 0.062 3.938 9 H 0.092 0.908 10 C 0.524 3.476 11 O -0.519 6.519 12 N -0.700 5.700 13 C 0.141 3.859 14 H 0.096 0.904 15 C 0.104 3.896 16 N -0.606 5.606 17 C -0.242 4.242 18 H 0.092 0.908 19 C 0.024 3.976 20 N -0.908 5.908 21 Si 0.877 3.123 22 H -0.283 1.283 23 H -0.302 1.302 24 H -0.276 1.276 25 C 0.142 3.858 26 C -0.087 4.087 27 C -0.131 4.131 28 C -0.131 4.131 29 C 0.090 3.910 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.402 0.598 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.263 0.737 41 H 0.033 0.967 42 H 0.035 0.965 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.108 0.892 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 0.769 17.382 23.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.303 3.697 3 O -0.415 6.415 4 N -0.354 5.354 5 C -0.052 4.052 6 C -0.034 4.034 7 O -0.264 6.264 8 C 0.000 4.000 9 H 0.110 0.890 10 C 0.307 3.693 11 O -0.393 6.393 12 N -0.353 5.353 13 C 0.036 3.964 14 H 0.114 0.886 15 C -0.022 4.022 16 N -0.333 5.333 17 C -0.369 4.369 18 H 0.109 0.891 19 C -0.174 4.174 20 N -0.552 5.552 21 Si 0.707 3.293 22 H -0.210 1.210 23 H -0.230 1.230 24 H -0.202 1.202 25 C 0.017 3.983 26 C -0.088 4.088 27 C -0.189 4.189 28 C -0.189 4.189 29 C -0.033 4.033 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.238 0.762 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.126 0.874 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.281 0.316 17.337 23.112 hybrid contribution 0.203 -0.409 -0.077 0.464 sum -15.078 -0.093 17.260 22.918 Atomic orbital electron populations 1.21944 0.91339 1.05759 1.04196 1.20889 0.90769 0.82718 0.75321 1.90747 1.70678 1.30775 1.49340 1.48190 1.06513 1.06328 1.74344 1.22546 0.97519 0.84211 1.00964 1.23095 0.81540 1.01405 0.97317 1.88146 1.18130 1.27032 1.93130 1.22290 0.91813 0.86205 0.99736 0.89039 1.19734 0.86986 0.84946 0.77606 1.90728 1.77386 1.24317 1.46918 1.45734 1.06554 1.11691 1.71302 1.22181 0.78412 0.97172 0.98664 0.88649 1.22365 0.97872 0.90666 0.91343 1.44772 1.85958 1.00552 1.02002 1.18602 1.42377 0.98042 0.77852 0.89054 1.24965 0.99916 0.97524 0.95005 1.69839 1.47262 1.31485 1.06608 0.87055 0.81317 0.83565 0.77331 1.20978 1.23014 1.20168 1.21483 0.98986 0.91493 0.86375 1.21883 0.95784 0.94685 0.96461 1.21721 0.99280 0.99238 0.98676 1.21725 0.95052 1.01860 1.00262 1.22154 0.80257 1.01714 0.99160 0.89276 0.88717 0.89196 0.89986 0.88304 0.86851 0.92126 0.76218 0.94765 0.91902 0.92751 0.94919 0.94735 0.92600 0.92219 0.92682 0.91902 0.92111 0.92771 0.87363 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 8.69 36.01 0.31 -0.62 16 2 C 0.51 5.19 7.82 -10.99 -0.09 5.11 16 3 O -0.54 -7.79 16.55 5.56 0.09 -7.70 16 4 N -0.62 -5.80 3.02 -172.30 -0.52 -6.32 16 5 C 0.07 0.45 6.54 -3.53 -0.02 0.42 16 6 C 0.04 0.36 6.99 37.31 0.26 0.62 16 7 O -0.35 -4.69 9.93 -55.07 -0.55 -5.24 16 8 C 0.06 0.83 3.19 -27.75 -0.09 0.74 16 9 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 10 C 0.52 8.76 7.18 -10.99 -0.08 8.68 16 11 O -0.52 -10.71 16.20 -14.29 -0.23 -10.95 16 12 N -0.70 -11.12 4.58 -51.73 -0.24 -11.36 16 13 C 0.14 2.47 2.61 -65.78 -0.17 2.29 16 14 H 0.10 1.66 7.53 -51.93 -0.39 1.27 16 15 C 0.10 2.33 4.08 -2.47 -0.01 2.32 16 16 N -0.61 -14.40 3.21 -169.98 -0.55 -14.95 16 17 C -0.24 -6.85 10.57 -15.06 -0.16 -7.01 16 18 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 19 C 0.02 0.73 5.43 -17.43 -0.09 0.63 16 20 N -0.91 -28.37 13.97 55.49 0.78 -27.60 16 21 Si 0.88 23.33 24.27 -169.99 -4.13 19.21 16 22 H -0.28 -7.54 6.48 56.52 0.37 -7.17 16 23 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 24 H -0.28 -7.14 6.66 56.52 0.38 -6.76 16 25 C 0.14 2.68 6.41 -3.06 -0.02 2.66 16 26 C -0.09 -1.32 0.80 -152.67 -0.12 -1.44 16 27 C -0.13 -1.57 8.07 37.16 0.30 -1.27 16 28 C -0.13 -1.82 8.41 37.16 0.31 -1.51 16 29 C 0.09 1.01 5.88 -3.55 -0.02 0.99 16 30 H 0.09 0.30 8.01 -51.93 -0.42 -0.12 16 31 H 0.09 0.54 8.12 -51.93 -0.42 0.11 16 32 H 0.09 0.32 7.66 -51.93 -0.40 -0.07 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.31 6.05 -51.93 -0.31 -0.01 16 35 H 0.11 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.40 5.73 7.03 -40.82 -0.29 5.44 16 38 H 0.03 0.81 5.24 -51.92 -0.27 0.54 16 39 H 0.06 1.61 6.63 -51.93 -0.34 1.27 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 41 H 0.03 0.60 7.76 -51.93 -0.40 0.20 16 42 H 0.03 0.66 7.84 -51.93 -0.41 0.25 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.64 6.42 -51.93 -0.33 0.31 16 46 H 0.06 1.00 7.57 -51.93 -0.39 0.61 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.11 1.26 7.08 -51.93 -0.37 0.89 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -37.64 387.26 -7.36 -45.01 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.17 Total: 1.44 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 0.31 Total: 12.62 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.53 Total: -60.22 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.69 Total: -23.89 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -4.13 Total: 19.21 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.64 -7.36 -45.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977538336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.261 kcal (2) G-P(sol) polarization free energy of solvation -37.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds