Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21279 * 120.00327 * 2 1 4 4 N 1.34776 * 119.99951 * 179.97438 * 2 1 3 5 5 C 1.47155 * 120.98165 * 0.02562 * 4 2 1 6 6 C 1.53291 * 108.41607 * 129.41864 * 5 4 2 7 7 O 1.43049 * 109.18140 * 52.28982 * 6 5 4 8 8 C 1.42967 * 114.18108 * 297.43777 * 7 6 5 9 9 H 1.09001 * 109.54994 * 302.63015 * 8 7 6 10 10 C 1.50690 * 109.51102 * 182.50849 * 8 7 6 11 11 O 1.21291 * 120.00252 * 355.25029 * 10 8 7 12 12 N 1.34783 * 120.00184 * 175.25520 * 10 8 7 13 13 C 1.46498 * 119.99904 * 179.97438 * 12 10 8 14 14 H 1.08993 * 110.88990 * 325.69369 * 13 12 10 15 15 C 1.54913 * 111.00392 * 89.58183 * 13 12 10 16 16 N 1.47525 * 104.78565 * 81.08646 * 15 13 12 17 17 C 1.36942 * 125.63426 * 204.15586 * 16 15 13 18 18 H 1.08002 * 119.99539 * 161.51945 * 17 16 15 19 19 C 1.38812 * 119.99948 * 341.52109 * 17 16 15 20 20 N 1.31617 * 119.99770 * 157.60513 * 19 17 16 21 21 Si 1.86803 * 119.99920 * 337.60089 * 19 17 16 22 22 H 1.48506 * 109.46844 * 84.54579 * 21 19 17 23 23 H 1.48495 * 109.47047 * 204.54214 * 21 19 17 24 24 H 1.48497 * 109.47189 * 324.54603 * 21 19 17 25 25 C 1.47024 * 108.71623 * 24.11649 * 16 15 13 26 26 C 1.54324 * 107.27140 * 358.94458 * 25 16 15 27 27 C 1.53000 * 110.72041 * 219.44459 * 26 25 16 28 28 C 1.52997 * 110.71928 * 96.16590 * 26 25 16 29 29 C 1.47148 * 120.98423 * 179.97438 * 4 2 1 30 30 H 1.08992 * 109.47337 * 240.00312 * 1 2 3 31 31 H 1.09002 * 109.46857 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47024 * 120.00365 * 1 2 3 33 33 H 1.09000 * 109.68057 * 249.15866 * 5 4 2 34 34 H 1.09002 * 109.67765 * 9.67687 * 5 4 2 35 35 H 1.09007 * 109.51419 * 172.24456 * 6 5 4 36 36 H 1.08998 * 109.51512 * 292.39381 * 6 5 4 37 37 H 0.97000 * 119.99538 * 359.97438 * 12 10 8 38 38 H 1.09010 * 110.36193 * 199.89944 * 15 13 12 39 39 H 1.08998 * 110.36817 * 322.21948 * 15 13 12 40 40 H 0.97002 * 120.00009 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.88252 * 239.52701 * 25 16 15 42 42 H 1.09000 * 110.01078 * 118.43661 * 25 16 15 43 43 H 1.09003 * 109.46922 * 173.52607 * 27 26 25 44 44 H 1.08995 * 109.46973 * 293.51893 * 27 26 25 45 45 H 1.08997 * 109.46920 * 53.51895 * 27 26 25 46 46 H 1.08996 * 109.47644 * 306.48245 * 28 26 25 47 47 H 1.09007 * 109.46721 * 66.47971 * 28 26 25 48 48 H 1.09005 * 109.47191 * 186.47448 * 28 26 25 49 49 H 1.09004 * 109.68184 * 350.28440 * 29 4 2 50 50 H 1.09003 * 109.68465 * 110.84008 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4670 -2.4540 0.0005 6 6 2.0401 -3.3257 -1.1226 7 8 3.4630 -3.3882 -0.9895 8 6 4.1197 -2.1253 -1.1226 9 1 3.8716 -1.6852 -2.0885 10 6 5.6108 -2.3207 -1.0267 11 8 6.0638 -3.4173 -0.7749 12 7 6.4412 -1.2769 -1.2206 13 6 7.8908 -1.4669 -1.1267 14 1 8.1369 -2.2119 -0.3703 15 6 8.4904 -1.8526 -2.5020 16 7 8.6325 -0.5734 -3.2229 17 6 8.6702 -0.4244 -4.5837 18 1 8.4778 0.5417 -5.0266 19 6 8.9556 -1.5149 -5.3937 20 7 8.5759 -1.5159 -6.6539 21 14 9.8786 -2.9811 -4.6951 22 1 8.9195 -3.8969 -4.0266 23 1 10.5670 -3.7026 -5.7954 24 1 10.8827 -2.5094 -3.7081 25 6 8.7261 0.5149 -2.2388 26 6 8.6102 -0.1227 -0.8382 27 6 7.7661 0.7551 0.0880 28 6 9.9963 -0.3685 -0.2389 29 6 3.6521 -1.1925 0.0000 30 1 -0.3633 -0.5137 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 1.6079 -2.9519 0.9599 34 1 0.4043 -2.2842 -0.1724 35 1 1.6226 -4.3303 -1.0529 36 1 1.7836 -2.8903 -2.0884 37 1 6.0789 -0.4000 -1.4222 38 1 9.4641 -2.3252 -2.3722 39 1 7.8134 -2.5178 -3.0379 40 1 8.7756 -2.2778 -7.2201 41 1 7.9126 1.2240 -2.3918 42 1 9.6849 1.0243 -2.3361 43 1 7.6012 0.2345 1.0313 44 1 8.2895 1.6923 0.2769 45 1 6.8063 0.9639 -0.3845 46 1 10.5981 -0.9464 -0.9402 47 1 10.4827 0.5875 -0.0446 48 1 9.8955 -0.9214 0.6951 49 1 4.0365 -0.1874 -0.1741 50 1 4.0133 -1.5632 0.9593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977538336.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -104.172339 kcal Electronic energy + Delta-G solvation = -31765.867511 eV Core-core repulsion = 27600.273569 eV Total energy + Delta-G solvation = -4165.593943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89619 -41.07244 -39.89543 -38.88724 -35.99024 -35.75699 -34.76483 -33.31926 -33.08385 -30.84512 -30.17305 -28.79167 -27.97264 -27.81994 -25.89176 -24.87329 -23.68711 -22.70613 -21.55130 -20.47803 -20.23896 -18.82283 -18.65902 -18.13767 -17.95685 -17.38114 -17.14810 -17.05132 -16.66877 -16.25196 -15.96065 -15.56591 -15.48553 -15.20254 -15.12839 -14.92994 -14.57831 -14.38818 -14.10444 -13.99486 -13.87062 -13.63628 -13.53239 -13.13267 -13.05650 -13.03296 -12.93491 -12.74828 -12.68766 -12.50116 -12.33641 -11.98747 -11.87824 -11.81796 -11.58638 -11.43410 -11.42412 -11.09658 -10.90793 -10.82521 -10.18394 -9.75511 -9.07587 -8.23700 -5.47893 1.25175 1.28890 1.30996 1.37553 1.53357 1.67770 1.82169 2.35319 2.86918 2.97554 3.27313 3.37160 3.38641 3.53527 3.60222 3.71065 3.79278 3.93455 3.95525 4.16112 4.24015 4.25893 4.29048 4.29968 4.43574 4.47327 4.52026 4.61309 4.65262 4.70353 4.70490 4.83216 4.85646 4.87544 4.92714 5.03335 5.08358 5.11080 5.19880 5.20791 5.30486 5.36369 5.49718 5.63391 5.88102 6.05591 6.26027 6.38820 6.70991 7.03178 7.05253 7.49347 8.06436 8.96003 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003633 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.976533 B = 7704.439397 C = 8369.445957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.506 3.494 3 O -0.592 6.592 4 N -0.618 5.618 5 C 0.072 3.928 6 C 0.034 3.966 7 O -0.379 6.379 8 C 0.073 3.927 9 H 0.089 0.911 10 C 0.520 3.480 11 O -0.562 6.562 12 N -0.693 5.693 13 C 0.149 3.851 14 H 0.102 0.898 15 C 0.102 3.898 16 N -0.619 5.619 17 C -0.226 4.226 18 H 0.068 0.932 19 C -0.030 4.030 20 N -0.952 5.952 21 Si 0.932 3.068 22 H -0.290 1.290 23 H -0.305 1.305 24 H -0.264 1.264 25 C 0.136 3.864 26 C -0.071 4.071 27 C -0.126 4.126 28 C -0.131 4.131 29 C 0.098 3.902 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.027 0.973 39 H 0.024 0.976 40 H 0.261 0.739 41 H 0.041 0.959 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.055 0.945 46 H 0.036 0.964 47 H 0.082 0.918 48 H 0.076 0.924 49 H 0.101 0.899 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.849 1.107 20.403 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.298 3.702 3 O -0.472 6.472 4 N -0.352 5.352 5 C -0.049 4.049 6 C -0.043 4.043 7 O -0.297 6.297 8 C 0.010 3.990 9 H 0.107 0.893 10 C 0.306 3.694 11 O -0.440 6.440 12 N -0.346 5.346 13 C 0.043 3.957 14 H 0.120 0.880 15 C -0.024 4.024 16 N -0.346 5.346 17 C -0.355 4.355 18 H 0.086 0.914 19 C -0.225 4.225 20 N -0.599 5.599 21 Si 0.762 3.238 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.190 1.190 25 C 0.012 3.988 26 C -0.072 4.072 27 C -0.183 4.183 28 C -0.188 4.188 29 C -0.026 4.026 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.133 0.867 33 H 0.110 0.890 34 H 0.158 0.842 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.248 0.752 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.056 0.944 47 H 0.101 0.899 48 H 0.095 0.905 49 H 0.120 0.880 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.130 0.668 20.404 26.650 hybrid contribution 0.692 -0.491 -1.024 1.330 sum -16.439 0.177 19.380 25.414 Atomic orbital electron populations 1.21996 0.87325 1.06458 1.06668 1.21806 0.92623 0.81879 0.73884 1.90722 1.72040 1.32627 1.51852 1.48334 1.05693 1.07568 1.73643 1.22778 0.99191 0.82301 1.00630 1.23472 0.78913 1.03516 0.98362 1.88103 1.21156 1.27094 1.93389 1.22101 0.89453 0.86950 1.00471 0.89306 1.20401 0.88583 0.84192 0.76255 1.90696 1.78446 1.25895 1.48931 1.45702 1.06010 1.12115 1.70737 1.22050 0.79280 0.98848 0.95487 0.88022 1.22330 0.96994 0.89475 0.93608 1.44838 1.85800 1.02634 1.01313 1.18603 1.39931 0.96747 0.80173 0.91437 1.25486 1.01521 1.00111 0.95394 1.69940 1.49496 1.32532 1.07953 0.86165 0.80174 0.80850 0.76582 1.21685 1.23313 1.18956 1.21739 0.99274 0.90450 0.87373 1.21867 0.97133 0.93211 0.95006 1.21707 0.98785 0.99483 0.98364 1.21754 0.93572 1.03047 1.00440 1.21938 0.82034 1.00516 0.98156 0.86399 0.89102 0.86745 0.89004 0.84204 0.84418 0.91892 0.75190 0.95523 0.95757 0.92994 0.94134 0.94478 0.90893 0.90243 0.92557 0.94448 0.89919 0.90482 0.88031 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 8.69 71.24 0.62 -0.57 16 2 C 0.51 9.18 7.82 87.66 0.69 9.87 16 3 O -0.59 -16.73 16.55 -3.03 -0.05 -16.78 16 4 N -0.62 -10.22 3.02 -817.41 -2.47 -12.69 16 5 C 0.07 0.66 6.54 86.35 0.56 1.23 16 6 C 0.03 0.48 6.99 72.08 0.50 0.98 16 7 O -0.38 -9.98 9.93 -130.01 -1.29 -11.27 16 8 C 0.07 1.92 3.19 29.93 0.10 2.01 16 9 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 10 C 0.52 17.52 7.18 87.65 0.63 18.15 16 11 O -0.56 -23.60 16.20 15.90 0.26 -23.34 16 12 N -0.69 -21.80 4.58 -435.95 -2.00 -23.80 16 13 C 0.15 5.11 2.61 46.39 0.12 5.23 16 14 H 0.10 3.43 7.53 -2.39 -0.02 3.41 16 15 C 0.10 4.65 4.08 86.84 0.35 5.00 16 16 N -0.62 -29.73 3.21 -691.71 -2.22 -31.95 16 17 C -0.23 -13.14 10.57 84.03 0.89 -12.25 16 18 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 19 C -0.03 -1.85 5.43 84.86 0.46 -1.39 16 20 N -0.95 -61.65 13.97 21.65 0.30 -61.35 16 21 Si 0.93 49.98 24.27 68.60 1.66 51.64 16 22 H -0.29 -15.68 6.48 99.48 0.65 -15.03 16 23 H -0.30 -16.31 7.11 99.48 0.71 -15.61 16 24 H -0.26 -13.48 6.66 99.48 0.66 -12.82 16 25 C 0.14 4.98 6.41 86.73 0.56 5.53 16 26 C -0.07 -2.00 0.80 -50.99 -0.04 -2.04 16 27 C -0.13 -2.58 8.07 71.98 0.58 -2.00 16 28 C -0.13 -3.25 8.41 71.98 0.61 -2.64 16 29 C 0.10 2.08 5.88 86.34 0.51 2.59 16 30 H 0.12 0.20 8.01 -2.39 -0.02 0.18 16 31 H 0.09 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.11 0.29 7.66 -2.39 -0.02 0.28 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.14 0.14 6.05 -2.39 -0.01 0.12 16 35 H 0.14 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.41 11.45 7.03 -92.71 -0.65 10.80 16 38 H 0.03 1.28 5.24 -2.38 -0.01 1.26 16 39 H 0.02 1.28 6.63 -2.39 -0.02 1.27 16 40 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.04 1.44 7.76 -2.39 -0.02 1.42 16 42 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.06 1.16 6.42 -2.39 -0.02 1.14 16 46 H 0.04 1.12 7.57 -2.39 -0.02 1.10 16 47 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 48 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 49 H 0.10 2.30 7.08 -2.38 -0.02 2.28 16 50 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -87.10 387.26 1.52 -85.58 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.19 Total: 14.25 kcal Atomic # 6 Polarization: 22.57 SS G_CDS: 7.13 Total: 29.70 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -6.38 Total: -129.78 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -1.08 Total: -51.39 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.66 Total: 51.64 kcal Total: -87.10 1.52 -85.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977538336.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.592 kcal (2) G-P(sol) polarization free energy of solvation -87.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds