Wall clock time and date at job start Sat Apr 11 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21280 * 120.00581 * 2 1 4 4 N 1.34781 * 119.99452 * 180.02562 * 2 1 3 5 5 C 1.47151 * 120.98346 * 6.74256 * 4 2 1 6 6 C 1.53298 * 108.38399 * 230.51212 * 5 4 2 7 7 O 1.42965 * 109.21936 * 307.69970 * 6 5 4 8 8 C 1.42954 * 114.17095 * 62.58236 * 7 6 5 9 9 C 1.47159 * 120.97928 * 186.71385 * 4 2 1 10 10 H 1.08997 * 109.68167 * 249.24773 * 9 4 2 11 11 C 1.50695 * 109.68072 * 9.76977 * 9 4 2 12 12 O 1.21278 * 120.00465 * 62.27536 * 11 9 4 13 13 N 1.34777 * 119.99512 * 242.27859 * 11 9 4 14 14 C 1.46505 * 119.99714 * 180.02562 * 13 11 9 15 15 H 1.09000 * 110.77908 * 323.20858 * 14 13 11 16 16 C 1.54326 * 110.72127 * 86.44954 * 14 13 11 17 17 N 1.47026 * 107.26721 * 96.17149 * 16 14 13 18 18 C 1.36935 * 125.64551 * 178.97697 * 17 16 14 19 19 H 1.08007 * 120.00122 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00387 * 359.97162 * 18 17 16 21 21 N 1.31623 * 119.99669 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00329 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47068 * 90.00217 * 22 20 18 24 24 H 1.48499 * 109.47462 * 210.00085 * 22 20 18 25 25 H 1.48500 * 109.47440 * 330.00336 * 22 20 18 26 26 C 1.47419 * 108.70659 * 358.94122 * 17 16 14 27 27 C 1.54913 * 104.83330 * 24.12642 * 26 17 16 28 28 C 1.53001 * 111.00491 * 204.91702 * 27 26 17 29 29 C 1.53002 * 111.00209 * 81.06485 * 27 26 17 30 30 H 1.08999 * 109.47546 * 185.47284 * 1 2 3 31 31 H 1.09004 * 109.47220 * 305.47837 * 1 2 3 32 32 H 1.09001 * 109.47072 * 65.47144 * 1 2 3 33 33 H 1.08997 * 109.67945 * 350.23281 * 5 4 2 34 34 H 1.08997 * 109.67992 * 110.75128 * 5 4 2 35 35 H 1.09002 * 109.50989 * 67.61748 * 6 5 4 36 36 H 1.08996 * 109.51291 * 187.77907 * 6 5 4 37 37 H 1.09001 * 109.51310 * 177.49545 * 8 7 6 38 38 H 1.08994 * 109.51821 * 57.33665 * 8 7 6 39 39 H 0.96998 * 120.00549 * 359.97438 * 13 11 9 40 40 H 1.09000 * 109.88177 * 215.58586 * 16 14 13 41 41 H 1.08997 * 109.88275 * 336.60198 * 16 14 13 42 42 H 0.97003 * 119.99942 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.37377 * 142.96864 * 26 17 16 44 44 H 1.09002 * 110.36850 * 265.18080 * 26 17 16 45 45 H 1.09000 * 109.46653 * 172.19530 * 28 27 26 46 46 H 1.08996 * 109.46924 * 292.19637 * 28 27 26 47 47 H 1.08994 * 109.47005 * 52.19924 * 28 27 26 48 48 H 1.08999 * 109.46970 * 307.80959 * 29 27 26 49 49 H 1.08999 * 109.46871 * 67.80656 * 29 27 26 50 50 H 1.08993 * 109.47198 * 187.80321 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1807 -1.1673 -0.0005 5 6 1.4744 -2.4496 -0.1492 6 6 1.9342 -3.3878 0.9726 7 8 3.3627 -3.4469 0.9807 8 6 3.9987 -2.1962 1.2544 9 6 3.6446 -1.1970 0.1470 10 1 4.1018 -1.5108 -0.7914 11 6 4.1449 0.1742 0.5217 12 8 3.7930 0.6842 1.5643 13 7 4.9833 0.8339 -0.3019 14 6 5.4701 2.1668 0.0627 15 1 4.6912 2.7381 0.5678 16 6 6.7318 2.0647 0.9454 17 7 7.8967 2.2065 0.0596 18 6 9.2073 2.1927 0.4563 19 1 9.9941 2.3045 -0.2751 20 6 9.5246 2.0350 1.7984 21 7 8.5658 1.8982 2.6897 22 14 11.3124 2.0155 2.3395 23 1 11.7493 3.3993 2.6548 24 1 11.4547 1.1641 3.5478 25 1 12.1546 1.4676 1.2460 26 6 7.4203 2.3650 -1.3264 27 6 5.9826 2.9256 -1.1899 28 6 5.1412 2.5831 -2.4210 29 6 6.0038 4.4358 -0.9456 30 1 -0.3634 -1.0229 0.0980 31 1 -0.3634 0.5965 0.8369 32 1 -0.3633 0.4266 -0.9349 33 1 0.3992 -2.2873 -0.0743 34 1 1.7126 -2.8898 -1.1175 35 1 1.5800 -3.0096 1.9315 36 1 1.5296 -4.3853 0.8017 37 1 5.0792 -2.3365 1.2862 38 1 3.6520 -1.8137 2.2143 39 1 5.2650 0.4260 -1.1356 40 1 6.7309 2.8634 1.6872 41 1 6.7581 1.0958 1.4439 42 1 8.7875 1.7876 3.6276 43 1 8.0524 3.0696 -1.8668 44 1 7.4066 1.4013 -1.8355 45 1 4.1036 2.8651 -2.2418 46 1 5.5220 3.1284 -3.2845 47 1 5.1984 1.5118 -2.6136 48 1 6.6638 4.6591 -0.1075 49 1 6.3669 4.9433 -1.8393 50 1 4.9957 4.7809 -0.7163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977612376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:43 Heat of formation + Delta-G solvation = -63.457155 kcal Electronic energy + Delta-G solvation = -32405.273868 eV Core-core repulsion = 28241.445468 eV Total energy + Delta-G solvation = -4163.828400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.99515 -39.16865 -38.37094 -37.45944 -34.95970 -33.73846 -32.85119 -32.08142 -30.60905 -30.02203 -28.17910 -27.61480 -26.68947 -25.54805 -24.83119 -23.27129 -22.38746 -20.99036 -19.86492 -19.29826 -18.45317 -17.53171 -16.97298 -16.71062 -16.51207 -16.06083 -15.69829 -15.32291 -15.12716 -14.83296 -14.56439 -14.01735 -13.89342 -13.82344 -13.65530 -13.52812 -13.32027 -13.09692 -12.48563 -12.39931 -12.26415 -12.12858 -11.87853 -11.86486 -11.62872 -11.54398 -11.28064 -11.20098 -10.96313 -10.89724 -10.72735 -10.45280 -10.28268 -10.14254 -9.86104 -9.78293 -9.63619 -9.54934 -9.20472 -8.79443 -8.55087 -8.20060 -6.74486 -5.61627 -2.96470 2.40418 2.57865 3.36341 3.44563 3.45158 3.49188 3.51615 3.78288 4.35649 4.46058 4.51929 4.56228 4.77172 4.82053 4.92300 5.03878 5.07904 5.13528 5.19004 5.20793 5.38001 5.40284 5.42820 5.52650 5.61050 5.62254 5.70756 5.75946 5.94911 6.04877 6.10248 6.16588 6.28280 6.33232 6.39408 6.54491 6.69376 6.73703 6.78909 6.81502 6.92385 7.11867 7.13826 7.64527 7.77023 7.92528 8.04802 8.13282 8.33873 8.87834 9.29703 9.90438 10.56885 11.48643 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.003851 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.705742 B = 7269.352674 C = 8592.348554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.506 3.494 3 O -0.499 6.499 4 N -0.611 5.611 5 C 0.071 3.929 6 C 0.043 3.957 7 O -0.374 6.374 8 C 0.062 3.938 9 C 0.094 3.906 10 H 0.091 0.909 11 C 0.538 3.462 12 O -0.529 6.529 13 N -0.702 5.702 14 C 0.135 3.865 15 H 0.086 0.914 16 C 0.177 3.823 17 N -0.603 5.603 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.145 3.855 27 C -0.089 4.089 28 C -0.127 4.127 29 C -0.125 4.125 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.390 0.610 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.039 0.961 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.051 0.949 47 H 0.047 0.953 48 H 0.068 0.932 49 H 0.050 0.950 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.458 -9.313 -9.315 22.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.372 6.372 4 N -0.350 5.350 5 C -0.052 4.052 6 C -0.035 4.035 7 O -0.292 6.292 8 C -0.016 4.016 9 C -0.013 4.013 10 H 0.109 0.891 11 C 0.323 3.677 12 O -0.405 6.405 13 N -0.353 5.353 14 C 0.030 3.970 15 H 0.104 0.896 16 C 0.051 3.949 17 N -0.329 5.329 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.204 4.204 21 N -0.565 5.565 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.018 3.982 27 C -0.090 4.090 28 C -0.185 4.185 29 C -0.182 4.182 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.224 0.776 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.032 0.968 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.166 -8.523 -8.370 21.742 hybrid contribution 0.912 -0.175 -0.082 0.932 sum -17.254 -8.698 -8.453 21.090 Atomic orbital electron populations 1.21970 0.91533 1.04215 1.05400 1.20877 0.90690 0.83056 0.75930 1.90818 1.68665 1.30422 1.47326 1.48126 1.05679 1.06598 1.74561 1.22606 0.98250 0.83975 1.00338 1.23022 0.82272 1.00407 0.97811 1.87999 1.18384 1.30604 1.92176 1.22889 0.99384 0.82826 0.96478 1.21890 0.81764 0.96618 1.01076 0.89091 1.19286 0.78530 0.85302 0.84581 1.90683 1.57353 1.67434 1.25032 1.45755 1.47881 1.18757 1.22908 1.22347 0.97497 0.81640 0.95526 0.89588 1.21507 0.81702 1.01249 0.90431 1.44454 1.02261 1.85731 1.00474 1.19027 0.81632 1.43136 0.91928 0.90562 1.24801 0.97415 1.02253 0.95896 1.69987 1.29627 1.55857 1.01030 0.86161 0.84442 0.77416 0.77966 1.21686 1.21769 1.20809 1.21617 0.91507 0.96339 0.88720 1.21989 0.96683 0.96039 0.94337 1.21631 0.99549 1.00386 0.96905 1.21582 1.01272 0.93353 1.02016 0.90218 0.88564 0.88769 0.87933 0.90188 0.92280 0.87487 0.86716 0.90937 0.77621 0.93102 0.93569 0.93778 0.94274 0.96841 0.92723 0.92955 0.93382 0.91293 0.93048 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.09 36.00 0.36 -1.01 16 2 C 0.51 6.74 7.48 -10.99 -0.08 6.65 16 3 O -0.50 -9.15 13.28 -18.33 -0.24 -9.39 16 4 N -0.61 -7.17 3.02 -166.05 -0.50 -7.67 16 5 C 0.07 0.51 6.57 -3.53 -0.02 0.48 16 6 C 0.04 0.33 6.99 37.31 0.26 0.59 16 7 O -0.37 -4.34 10.74 -35.23 -0.38 -4.72 16 8 C 0.06 0.84 6.24 37.31 0.23 1.07 16 9 C 0.09 1.31 3.51 -68.57 -0.24 1.07 16 10 H 0.09 1.11 7.93 -51.93 -0.41 0.70 16 11 C 0.54 10.03 4.24 -10.99 -0.05 9.98 16 12 O -0.53 -12.06 14.69 -18.33 -0.27 -12.33 16 13 N -0.70 -12.88 4.57 -52.03 -0.24 -13.12 16 14 C 0.13 2.81 2.51 -66.09 -0.17 2.65 16 15 H 0.09 1.97 7.61 -51.93 -0.40 1.58 16 16 C 0.18 4.54 4.79 -3.06 -0.01 4.52 16 17 N -0.60 -15.54 3.38 -170.07 -0.57 -16.11 16 18 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -27.93 10.31 55.49 0.57 -27.36 16 22 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C 0.14 3.00 6.14 -2.53 -0.02 2.98 16 27 C -0.09 -1.61 0.83 -152.36 -0.13 -1.74 16 28 C -0.13 -1.87 8.22 37.16 0.31 -1.57 16 29 C -0.12 -2.18 8.57 37.16 0.32 -1.86 16 30 H 0.08 0.39 5.21 -51.93 -0.27 0.12 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.43 5.14 -51.93 -0.27 0.16 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.07 1.09 7.86 -51.93 -0.41 0.68 16 39 H 0.39 6.27 6.75 -40.82 -0.28 5.99 16 40 H 0.05 1.48 7.38 -51.93 -0.38 1.10 16 41 H 0.05 1.34 7.41 -51.93 -0.38 0.96 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 44 H 0.01 0.28 7.99 -51.93 -0.41 -0.14 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.05 0.66 6.38 -51.93 -0.33 0.33 16 48 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -37.04 385.97 -8.47 -45.50 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -8.14 Total: 4.90 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 0.52 Total: 16.91 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.74 Total: -64.26 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.89 Total: -26.44 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.04 -8.47 -45.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977612376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.953 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds