Wall clock time and date at job start Sat Apr 11 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21280 * 120.00581 * 2 1 4 4 N 1.34781 * 119.99452 * 180.02562 * 2 1 3 5 5 C 1.47151 * 120.98346 * 6.74256 * 4 2 1 6 6 C 1.53298 * 108.38399 * 230.51212 * 5 4 2 7 7 O 1.42965 * 109.21936 * 307.69970 * 6 5 4 8 8 C 1.42954 * 114.17095 * 62.58236 * 7 6 5 9 9 C 1.47159 * 120.97928 * 186.71385 * 4 2 1 10 10 H 1.08997 * 109.68167 * 249.24773 * 9 4 2 11 11 C 1.50695 * 109.68072 * 9.76977 * 9 4 2 12 12 O 1.21278 * 120.00465 * 62.27536 * 11 9 4 13 13 N 1.34777 * 119.99512 * 242.27859 * 11 9 4 14 14 C 1.46505 * 119.99714 * 180.02562 * 13 11 9 15 15 H 1.09000 * 110.77908 * 323.20858 * 14 13 11 16 16 C 1.54326 * 110.72127 * 86.44954 * 14 13 11 17 17 N 1.47026 * 107.26721 * 96.17149 * 16 14 13 18 18 C 1.36935 * 125.64551 * 178.97697 * 17 16 14 19 19 H 1.08007 * 120.00122 * 179.97438 * 18 17 16 20 20 C 1.38815 * 120.00387 * 359.97162 * 18 17 16 21 21 N 1.31623 * 119.99669 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00329 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47068 * 90.00217 * 22 20 18 24 24 H 1.48499 * 109.47462 * 210.00085 * 22 20 18 25 25 H 1.48500 * 109.47440 * 330.00336 * 22 20 18 26 26 C 1.47419 * 108.70659 * 358.94122 * 17 16 14 27 27 C 1.54913 * 104.83330 * 24.12642 * 26 17 16 28 28 C 1.53001 * 111.00491 * 204.91702 * 27 26 17 29 29 C 1.53002 * 111.00209 * 81.06485 * 27 26 17 30 30 H 1.08999 * 109.47546 * 185.47284 * 1 2 3 31 31 H 1.09004 * 109.47220 * 305.47837 * 1 2 3 32 32 H 1.09001 * 109.47072 * 65.47144 * 1 2 3 33 33 H 1.08997 * 109.67945 * 350.23281 * 5 4 2 34 34 H 1.08997 * 109.67992 * 110.75128 * 5 4 2 35 35 H 1.09002 * 109.50989 * 67.61748 * 6 5 4 36 36 H 1.08996 * 109.51291 * 187.77907 * 6 5 4 37 37 H 1.09001 * 109.51310 * 177.49545 * 8 7 6 38 38 H 1.08994 * 109.51821 * 57.33665 * 8 7 6 39 39 H 0.96998 * 120.00549 * 359.97438 * 13 11 9 40 40 H 1.09000 * 109.88177 * 215.58586 * 16 14 13 41 41 H 1.08997 * 109.88275 * 336.60198 * 16 14 13 42 42 H 0.97003 * 119.99942 * 179.97438 * 21 20 18 43 43 H 1.08996 * 110.37377 * 142.96864 * 26 17 16 44 44 H 1.09002 * 110.36850 * 265.18080 * 26 17 16 45 45 H 1.09000 * 109.46653 * 172.19530 * 28 27 26 46 46 H 1.08996 * 109.46924 * 292.19637 * 28 27 26 47 47 H 1.08994 * 109.47005 * 52.19924 * 28 27 26 48 48 H 1.08999 * 109.46970 * 307.80959 * 29 27 26 49 49 H 1.08999 * 109.46871 * 67.80656 * 29 27 26 50 50 H 1.08993 * 109.47198 * 187.80321 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1807 -1.1673 -0.0005 5 6 1.4744 -2.4496 -0.1492 6 6 1.9342 -3.3878 0.9726 7 8 3.3627 -3.4469 0.9807 8 6 3.9987 -2.1962 1.2544 9 6 3.6446 -1.1970 0.1470 10 1 4.1018 -1.5108 -0.7914 11 6 4.1449 0.1742 0.5217 12 8 3.7930 0.6842 1.5643 13 7 4.9833 0.8339 -0.3019 14 6 5.4701 2.1668 0.0627 15 1 4.6912 2.7381 0.5678 16 6 6.7318 2.0647 0.9454 17 7 7.8967 2.2065 0.0596 18 6 9.2073 2.1927 0.4563 19 1 9.9941 2.3045 -0.2751 20 6 9.5246 2.0350 1.7984 21 7 8.5658 1.8982 2.6897 22 14 11.3124 2.0155 2.3395 23 1 11.7493 3.3993 2.6548 24 1 11.4547 1.1641 3.5478 25 1 12.1546 1.4676 1.2460 26 6 7.4203 2.3650 -1.3264 27 6 5.9826 2.9256 -1.1899 28 6 5.1412 2.5831 -2.4210 29 6 6.0038 4.4358 -0.9456 30 1 -0.3634 -1.0229 0.0980 31 1 -0.3634 0.5965 0.8369 32 1 -0.3633 0.4266 -0.9349 33 1 0.3992 -2.2873 -0.0743 34 1 1.7126 -2.8898 -1.1175 35 1 1.5800 -3.0096 1.9315 36 1 1.5296 -4.3853 0.8017 37 1 5.0792 -2.3365 1.2862 38 1 3.6520 -1.8137 2.2143 39 1 5.2650 0.4260 -1.1356 40 1 6.7309 2.8634 1.6872 41 1 6.7581 1.0958 1.4439 42 1 8.7875 1.7876 3.6276 43 1 8.0524 3.0696 -1.8668 44 1 7.4066 1.4013 -1.8355 45 1 4.1036 2.8651 -2.2418 46 1 5.5220 3.1284 -3.2845 47 1 5.1984 1.5118 -2.6136 48 1 6.6638 4.6591 -0.1075 49 1 6.3669 4.9433 -1.8393 50 1 4.9957 4.7809 -0.7163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977612376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:42 Heat of formation + Delta-G solvation = -91.173655 kcal Electronic energy + Delta-G solvation = -32406.475746 eV Core-core repulsion = 28241.445468 eV Total energy + Delta-G solvation = -4165.030277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.12386 -40.69266 -39.34329 -39.00266 -35.92554 -35.67987 -34.45616 -33.09640 -32.61997 -30.75403 -29.85175 -28.62480 -28.08421 -27.43178 -26.01245 -24.88809 -23.30780 -22.54609 -21.59815 -20.59495 -19.82488 -18.73363 -18.62404 -18.00985 -17.74434 -17.25578 -16.75293 -16.63225 -16.47298 -16.03945 -15.86083 -15.64547 -15.46779 -15.28652 -14.82030 -14.70362 -14.57947 -14.48100 -13.90343 -13.79903 -13.46858 -13.25767 -13.17534 -13.04827 -12.98771 -12.92561 -12.77446 -12.70019 -12.62167 -12.49658 -12.10749 -11.98854 -11.86233 -11.76336 -11.51942 -11.39084 -11.32608 -10.85050 -10.73941 -10.58827 -9.91808 -9.69135 -8.90068 -7.82801 -5.20576 1.37833 1.43479 1.46313 1.55011 1.61239 2.06522 2.19639 2.49164 2.78845 3.34888 3.44680 3.48697 3.63675 3.72132 3.78157 3.84020 3.94523 3.97506 4.04280 4.06341 4.20173 4.32308 4.38311 4.52873 4.54365 4.58036 4.63449 4.71175 4.74528 4.80607 4.85173 4.89861 4.91399 5.01709 5.07723 5.09932 5.13993 5.20225 5.31026 5.34455 5.45502 5.52295 5.71253 5.79486 5.95079 6.16735 6.27053 6.63876 7.07156 7.09079 7.43671 7.77259 8.42694 9.26421 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.003851 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.705742 B = 7269.352674 C = 8592.348554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.491 3.509 3 O -0.559 6.559 4 N -0.610 5.610 5 C 0.069 3.931 6 C 0.032 3.968 7 O -0.380 6.380 8 C 0.072 3.928 9 C 0.100 3.900 10 H 0.115 0.885 11 C 0.534 3.466 12 O -0.580 6.580 13 N -0.696 5.696 14 C 0.150 3.850 15 H 0.059 0.941 16 C 0.199 3.801 17 N -0.619 5.619 18 C -0.238 4.238 19 H 0.089 0.911 20 C -0.070 4.070 21 N -0.955 5.955 22 Si 0.979 3.021 23 H -0.287 1.287 24 H -0.299 1.299 25 H -0.263 1.263 26 C 0.141 3.859 27 C -0.076 4.076 28 C -0.116 4.116 29 C -0.121 4.121 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.403 0.597 40 H -0.001 1.001 41 H 0.000 1.000 42 H 0.243 0.757 43 H 0.050 0.950 44 H 0.032 0.968 45 H 0.053 0.947 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.030 0.970 49 H 0.081 0.919 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.906 -11.074 -12.797 26.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.282 3.718 3 O -0.437 6.437 4 N -0.347 5.347 5 C -0.051 4.051 6 C -0.044 4.044 7 O -0.298 6.298 8 C -0.007 4.007 9 C -0.008 4.008 10 H 0.133 0.867 11 C 0.321 3.679 12 O -0.459 6.459 13 N -0.347 5.347 14 C 0.044 3.956 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.345 5.345 18 C -0.367 4.367 19 H 0.107 0.893 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.808 3.192 23 H -0.214 1.214 24 H -0.225 1.225 25 H -0.188 1.188 26 C 0.017 3.983 27 C -0.078 4.078 28 C -0.174 4.174 29 C -0.179 4.179 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.157 0.843 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.163 0.837 37 H 0.124 0.876 38 H 0.065 0.935 39 H 0.240 0.760 40 H 0.017 0.983 41 H 0.019 0.981 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.072 0.928 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.049 0.951 49 H 0.100 0.900 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.638 -10.346 -11.936 25.202 hybrid contribution 1.298 0.327 1.010 1.677 sum -18.340 -10.019 -10.927 23.582 Atomic orbital electron populations 1.21997 0.87146 1.06736 1.06072 1.21932 0.92834 0.82451 0.74534 1.90785 1.70067 1.32621 1.50233 1.48350 1.04565 1.08230 1.73594 1.22987 0.99806 0.81389 1.00942 1.23406 0.80096 1.02856 0.98085 1.87994 1.20807 1.28952 1.92047 1.22606 0.99224 0.83693 0.95175 1.21741 0.83926 0.93119 1.02005 0.86741 1.20107 0.77516 0.86727 0.83548 1.90648 1.58921 1.69137 1.27228 1.45604 1.47775 1.17886 1.23473 1.21847 0.94199 0.83344 0.96203 0.92329 1.21016 0.84515 0.96733 0.90482 1.44688 1.01628 1.85510 1.02715 1.19513 0.83080 1.41749 0.92331 0.89322 1.25710 1.01679 1.02720 0.96138 1.70272 1.31832 1.57566 1.00750 0.85060 0.79538 0.77166 0.77463 1.21406 1.22548 1.18768 1.21855 0.92877 0.97513 0.86094 1.21983 0.95489 0.95834 0.94476 1.21558 0.98614 1.01666 0.95525 1.21566 1.01153 0.93304 1.01882 0.86465 0.89060 0.87067 0.84275 0.88051 0.92845 0.83676 0.87571 0.93521 0.76011 0.98303 0.98132 0.94806 0.93151 0.95023 0.92818 0.90101 0.92124 0.95093 0.89988 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.09 71.23 0.72 -1.40 16 2 C 0.49 12.59 7.48 87.65 0.66 13.24 16 3 O -0.56 -20.98 13.28 19.81 0.26 -20.72 16 4 N -0.61 -13.25 3.02 -797.66 -2.41 -15.66 16 5 C 0.07 0.71 6.57 86.36 0.57 1.28 16 6 C 0.03 0.41 6.99 72.08 0.50 0.91 16 7 O -0.38 -8.25 10.74 -148.98 -1.60 -9.85 16 8 C 0.07 1.98 6.24 72.08 0.45 2.43 16 9 C 0.10 2.76 3.51 44.22 0.16 2.92 16 10 H 0.11 2.61 7.93 -2.39 -0.02 2.59 16 11 C 0.53 20.85 4.24 87.66 0.37 21.22 16 12 O -0.58 -28.56 14.69 19.82 0.29 -28.27 16 13 N -0.70 -26.31 4.57 -436.91 -2.00 -28.30 16 14 C 0.15 6.61 2.51 46.18 0.12 6.73 16 15 H 0.06 2.91 7.61 -2.39 -0.02 2.90 16 16 C 0.20 11.02 4.79 86.73 0.42 11.44 16 17 N -0.62 -32.97 3.38 -691.98 -2.34 -35.31 16 18 C -0.24 -13.71 10.28 84.03 0.86 -12.85 16 19 H 0.09 4.79 7.83 -2.91 -0.02 4.76 16 20 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16 21 N -0.95 -61.91 10.31 21.65 0.22 -61.68 16 22 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 25 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 26 C 0.14 5.74 6.14 86.86 0.53 6.27 16 27 C -0.08 -2.73 0.83 -50.79 -0.04 -2.77 16 28 C -0.12 -3.09 8.22 71.98 0.59 -2.49 16 29 C -0.12 -4.23 8.57 71.98 0.62 -3.61 16 30 H 0.12 0.57 5.21 -2.39 -0.01 0.55 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.14 0.40 5.14 -2.39 -0.01 0.38 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.15 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.05 1.51 7.86 -2.39 -0.02 1.49 16 39 H 0.40 12.72 6.75 -92.71 -0.63 12.09 16 40 H 0.00 -0.08 7.38 -2.39 -0.02 -0.09 16 41 H 0.00 0.03 7.41 -2.39 -0.02 0.01 16 42 H 0.24 15.44 8.31 -92.71 -0.77 14.67 16 43 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 44 H 0.03 1.21 7.99 -2.39 -0.02 1.19 16 45 H 0.05 1.48 8.14 -2.39 -0.02 1.47 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.06 1.47 6.38 -2.39 -0.02 1.45 16 48 H 0.03 1.29 7.91 -2.39 -0.02 1.27 16 49 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -90.28 385.97 1.76 -88.52 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.32 Total: 21.92 kcal Atomic # 6 Polarization: 32.61 SS G_CDS: 6.98 Total: 39.59 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -6.52 Total: -140.96 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -1.05 Total: -58.83 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -90.28 1.76 -88.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977612376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.656 kcal (2) G-P(sol) polarization free energy of solvation -90.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds