Wall clock time and date at job start Sat Apr 11 2020 05:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21282 * 119.99819 * 2 1 4 4 N 1.34776 * 119.99911 * 179.97438 * 2 1 3 5 5 C 1.47143 * 120.98472 * 353.76420 * 4 2 1 6 6 C 1.53710 * 108.16528 * 129.43148 * 5 4 2 7 7 O 1.42969 * 109.14571 * 52.53513 * 6 5 4 8 8 C 1.42958 * 114.16851 * 297.29548 * 7 6 5 9 9 C 1.47152 * 120.98113 * 174.04657 * 4 2 1 10 10 H 1.08996 * 109.68097 * 110.78604 * 9 4 2 11 11 C 1.50703 * 109.68389 * 350.23751 * 9 4 2 12 12 O 1.21289 * 119.99748 * 302.61791 * 11 9 4 13 13 N 1.34772 * 120.00334 * 122.61292 * 11 9 4 14 14 C 1.47426 * 125.64705 * 4.83678 * 13 11 9 15 15 C 1.55134 * 104.71896 * 155.81564 * 14 13 11 16 16 H 1.09009 * 110.90320 * 155.27925 * 15 14 13 17 17 N 1.46498 * 111.22515 * 279.17411 * 15 14 13 18 18 C 1.36940 * 120.00424 * 267.20605 * 17 15 14 19 19 H 1.07999 * 119.99663 * 0.02562 * 18 17 15 20 20 C 1.38812 * 119.99663 * 180.02562 * 18 17 15 21 21 N 1.31610 * 120.00463 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99472 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46839 * 90.00094 * 22 20 18 24 24 H 1.48495 * 109.47237 * 210.00095 * 22 20 18 25 25 H 1.48500 * 109.47288 * 330.00439 * 22 20 18 26 26 C 1.55151 * 101.48932 * 37.29913 * 15 14 13 27 27 C 1.53001 * 110.72257 * 205.96845 * 26 15 14 28 28 C 1.52996 * 110.87424 * 82.76238 * 26 15 14 29 29 C 1.47023 * 125.65147 * 185.14518 * 13 11 9 30 30 H 1.09006 * 109.47361 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47700 * 239.99696 * 1 2 3 32 32 H 1.09007 * 109.47329 * 120.00177 * 1 2 3 33 33 H 1.08996 * 109.68548 * 249.21462 * 5 4 2 34 34 H 1.09002 * 109.68313 * 9.76839 * 5 4 2 35 35 H 1.09004 * 109.66112 * 292.57623 * 6 5 4 36 36 H 1.08996 * 109.49447 * 172.39965 * 6 5 4 37 37 H 1.09005 * 109.51077 * 302.64925 * 8 7 6 38 38 H 1.09001 * 109.50963 * 182.50028 * 8 7 6 39 39 H 1.08999 * 110.36981 * 274.74619 * 14 13 11 40 40 H 1.09006 * 110.36475 * 37.07380 * 14 13 11 41 41 H 0.97001 * 119.99496 * 87.21507 * 17 15 14 42 42 H 0.97004 * 120.00157 * 179.97438 * 21 20 18 43 43 H 1.08997 * 109.46920 * 174.97358 * 27 26 15 44 44 H 1.08996 * 109.47047 * 294.97660 * 27 26 15 45 45 H 1.09004 * 109.47051 * 54.97430 * 27 26 15 46 46 H 1.09000 * 109.47084 * 304.93665 * 28 26 15 47 47 H 1.08999 * 109.47473 * 64.93555 * 28 26 15 48 48 H 1.08999 * 109.47272 * 184.93907 * 28 26 15 49 49 H 1.09000 * 109.88189 * 300.44470 * 29 13 11 50 50 H 1.09003 * 109.88609 * 61.44982 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4735 -2.4502 0.1381 6 6 1.9459 -3.3811 -0.9901 7 8 3.3743 -3.4401 -0.9823 8 6 4.0133 -2.1876 -1.2401 9 6 3.6462 -1.1959 -0.1303 10 1 4.0926 -1.5165 0.8109 11 6 4.1507 0.1779 -0.4900 12 8 3.7421 0.7316 -1.4888 13 7 5.0558 0.7912 0.2981 14 6 5.7090 0.1977 1.4789 15 6 7.0336 0.9898 1.6363 16 1 7.3840 0.9607 2.6682 17 7 8.0625 0.4898 0.7212 18 6 8.9419 -0.4729 1.1397 19 1 8.8767 -0.8638 2.1443 20 6 9.9171 -0.9462 0.2726 21 7 9.9969 -0.4695 -0.9515 22 14 11.1162 -2.2599 0.8433 23 1 10.5554 -3.6032 0.5496 24 1 12.4075 -2.0956 0.1287 25 1 11.3390 -2.1254 2.3054 26 6 6.5862 2.4219 1.2411 27 6 7.7694 3.2302 0.7050 28 6 5.9378 3.1374 2.4279 29 6 5.5504 2.1650 0.1263 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5139 0.8899 32 1 -0.3634 -0.5139 -0.8900 33 1 1.7048 -2.8950 1.1059 34 1 0.3989 -2.2876 0.0557 35 1 1.6027 -2.9967 -1.9507 36 1 1.5394 -4.3800 -0.8316 37 1 3.6777 -1.7988 -2.2015 38 1 5.0941 -2.3276 -1.2604 39 1 5.0824 0.3226 2.3620 40 1 5.9172 -0.8583 1.3067 41 1 8.1209 0.8407 -0.1812 42 1 10.6787 -0.8000 -1.5573 43 1 7.4170 4.1990 0.3512 44 1 8.4993 3.3774 1.5010 45 1 8.2349 2.6897 -0.1193 46 1 5.1174 2.5319 2.8132 47 1 6.6798 3.2853 3.2126 48 1 5.5542 4.1047 2.1036 49 1 6.0233 2.2694 -0.8502 50 1 4.7242 2.8704 0.2151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996640967.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:39 Heat of formation + Delta-G solvation = -102.824263 kcal Electronic energy + Delta-G solvation = -32472.254969 eV Core-core repulsion = 28306.719483 eV Total energy + Delta-G solvation = -4165.535486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17995 -40.76126 -39.38055 -38.87203 -35.94736 -35.67817 -34.66830 -33.02653 -32.57589 -30.79859 -29.52103 -28.77338 -27.99650 -27.63837 -25.79003 -25.27536 -23.32437 -23.14318 -21.36909 -20.28822 -19.62005 -19.07763 -18.44416 -18.05766 -17.82966 -17.12333 -16.77069 -16.54557 -16.46599 -16.19169 -16.01614 -15.73168 -15.34415 -15.18320 -14.87522 -14.76374 -14.60023 -14.27661 -14.06639 -13.67391 -13.57497 -13.30592 -13.28323 -13.11039 -13.08633 -12.90339 -12.81959 -12.76799 -12.63618 -12.54043 -12.13656 -12.07654 -12.05292 -11.82420 -11.47657 -11.42739 -11.31090 -10.96568 -10.85950 -10.61685 -9.80441 -9.55133 -8.95089 -7.90458 -5.19384 1.33581 1.50651 1.51228 1.56781 1.59498 1.93338 2.10638 2.58380 2.71742 3.29101 3.39832 3.46195 3.61837 3.70329 3.79854 3.83845 3.85634 3.94563 4.05534 4.11192 4.18273 4.31304 4.36920 4.41801 4.43152 4.47705 4.59670 4.60250 4.67426 4.73100 4.74064 4.83880 4.85535 4.87260 4.96920 5.01492 5.06955 5.08333 5.17165 5.27606 5.33211 5.42942 5.54362 5.60059 5.92226 6.25480 6.29259 6.61053 7.03864 7.27211 7.36835 8.10163 8.34513 9.32780 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011278 B = 0.004384 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.218745 B = 6385.799190 C = 8142.476200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.490 3.510 3 O -0.562 6.562 4 N -0.611 5.611 5 C 0.074 3.926 6 C 0.032 3.968 7 O -0.382 6.382 8 C 0.074 3.926 9 C 0.101 3.899 10 H 0.102 0.898 11 C 0.548 3.452 12 O -0.580 6.580 13 N -0.602 5.602 14 C 0.078 3.922 15 C 0.172 3.828 16 H 0.088 0.912 17 N -0.719 5.719 18 C -0.235 4.235 19 H 0.085 0.915 20 C -0.071 4.071 21 N -0.970 5.970 22 Si 0.968 3.032 23 H -0.290 1.290 24 H -0.303 1.303 25 H -0.265 1.265 26 C -0.078 4.078 27 C -0.119 4.119 28 C -0.121 4.121 29 C 0.134 3.866 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.058 0.942 36 H 0.145 0.855 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.372 0.628 42 H 0.248 0.752 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.032 0.968 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.871 -3.169 7.462 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.282 3.718 3 O -0.440 6.440 4 N -0.349 5.349 5 C -0.047 4.047 6 C -0.044 4.044 7 O -0.300 6.300 8 C -0.004 4.004 9 C -0.007 4.007 10 H 0.120 0.880 11 C 0.337 3.663 12 O -0.460 6.460 13 N -0.335 5.335 14 C -0.048 4.048 15 C 0.061 3.939 16 H 0.105 0.895 17 N -0.357 5.357 18 C -0.367 4.367 19 H 0.102 0.898 20 C -0.263 4.263 21 N -0.620 5.620 22 Si 0.798 3.202 23 H -0.218 1.218 24 H -0.230 1.230 25 H -0.190 1.190 26 C -0.079 4.079 27 C -0.177 4.177 28 C -0.179 4.179 29 C 0.011 3.989 30 H 0.105 0.895 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.163 0.837 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.051 0.949 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.638 -2.649 7.048 22.910 hybrid contribution 1.097 -0.262 -0.827 1.398 sum -20.541 -2.911 6.221 21.659 Atomic orbital electron populations 1.21922 0.86721 1.06175 1.06624 1.22002 0.92942 0.82296 0.74606 1.90779 1.70417 1.32774 1.50007 1.48315 1.04254 1.08358 1.73969 1.22948 0.99574 0.81420 1.00758 1.23497 0.79864 1.02940 0.98128 1.88011 1.20968 1.28737 1.92318 1.22558 0.98783 0.83810 0.95277 1.21672 0.83902 0.93370 1.01757 0.88037 1.19678 0.77585 0.86686 0.82343 1.90602 1.59247 1.67206 1.28935 1.48170 1.41362 1.14826 1.29154 1.23348 0.95596 0.98707 0.87102 1.21621 0.86856 0.90540 0.94851 0.89464 1.42519 1.34164 1.45907 1.13100 1.19662 1.06989 1.12563 0.97455 0.89762 1.25484 1.01823 1.02830 0.96205 1.69839 1.37481 1.47697 1.07031 0.85217 0.78069 0.79084 0.77846 1.21786 1.22986 1.18962 1.21893 0.94474 0.96156 0.95421 1.21548 0.96563 0.98663 1.00900 1.21681 1.00434 0.99780 0.95980 1.21827 0.95952 0.83107 0.98055 0.89526 0.85879 0.87043 0.88589 0.84232 0.92364 0.83713 0.92942 0.88452 0.90115 0.91630 0.79494 0.94335 0.91753 0.91829 0.94664 0.92461 0.90639 0.91611 0.94935 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.69 71.23 0.62 -1.48 16 2 C 0.49 13.24 7.44 87.66 0.65 13.89 16 3 O -0.56 -21.83 13.02 20.46 0.27 -21.56 16 4 N -0.61 -14.84 3.01 -796.91 -2.40 -17.24 16 5 C 0.07 0.93 6.58 86.50 0.57 1.50 16 6 C 0.03 0.48 7.00 72.22 0.51 0.98 16 7 O -0.38 -9.67 10.74 -148.98 -1.60 -11.27 16 8 C 0.07 2.31 6.26 72.08 0.45 2.76 16 9 C 0.10 3.18 3.26 44.22 0.14 3.32 16 10 H 0.10 3.07 6.28 -2.39 -0.02 3.05 16 11 C 0.55 22.25 4.49 87.66 0.39 22.65 16 12 O -0.58 -27.84 14.96 20.44 0.31 -27.53 16 13 N -0.60 -23.56 3.32 -811.32 -2.70 -26.25 16 14 C 0.08 2.72 5.65 86.93 0.49 3.21 16 15 C 0.17 6.42 2.96 46.46 0.14 6.56 16 16 H 0.09 3.04 7.99 -2.38 -0.02 3.02 16 17 N -0.72 -34.63 4.57 -316.01 -1.44 -36.07 16 18 C -0.24 -12.33 9.96 84.03 0.84 -11.49 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 21 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 22 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 C -0.08 -2.58 0.80 -51.00 -0.04 -2.62 16 27 C -0.12 -4.07 8.15 71.98 0.59 -3.49 16 28 C -0.12 -3.08 8.44 71.98 0.61 -2.48 16 29 C 0.13 5.17 6.04 86.73 0.52 5.69 16 30 H 0.09 1.32 8.12 -2.38 -0.02 1.30 16 31 H 0.12 0.77 7.77 -2.39 -0.02 0.75 16 32 H 0.11 0.99 7.91 -2.38 -0.02 0.97 16 33 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.14 0.61 6.04 -2.39 -0.01 0.59 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.87 16 36 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.76 7.96 -2.38 -0.02 1.74 16 38 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.08 2.37 7.71 -2.39 -0.02 2.35 16 40 H 0.07 2.43 7.22 -2.38 -0.02 2.41 16 41 H 0.37 20.23 6.32 -92.71 -0.59 19.64 16 42 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.03 1.46 6.34 -2.39 -0.02 1.45 16 46 H 0.06 1.42 7.44 -2.39 -0.02 1.41 16 47 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.03 1.43 7.82 -2.39 -0.02 1.41 16 50 H 0.06 2.19 7.85 -2.39 -0.02 2.18 16 Total: -1.00 -81.71 388.81 2.04 -79.67 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.36 Total: 36.43 kcal Atomic # 6 Polarization: 28.55 SS G_CDS: 6.94 Total: 35.49 kcal Atomic # 7 Polarization: -132.21 SS G_CDS: -6.26 Total: -138.47 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -1.03 Total: -60.36 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -81.71 2.04 -79.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996640967.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.154 kcal (2) G-P(sol) polarization free energy of solvation -81.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds