Wall clock time and date at job start Sat Apr 11 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42904 * 113.99989 * 2 1 4 4 H 1.09001 * 110.91290 * 32.45426 * 3 2 1 5 5 C 1.55282 * 111.09864 * 156.35890 * 3 2 1 6 6 C 1.54322 * 103.00430 * 153.45085 * 5 3 2 7 7 H 1.09009 * 109.88484 * 218.47198 * 6 5 3 8 8 C 1.50702 * 109.88312 * 97.30726 * 6 5 3 9 9 O 1.21278 * 119.99597 * 260.73598 * 8 6 5 10 10 N 1.34778 * 120.00088 * 80.73765 * 8 6 5 11 11 C 1.46927 * 120.62789 * 359.71878 * 10 8 6 12 12 C 1.52763 * 109.00875 * 233.58429 * 11 10 8 13 13 C 1.53035 * 109.38292 * 305.59546 * 12 11 10 14 14 N 1.46503 * 109.46027 * 181.25822 * 13 12 11 15 15 C 1.36936 * 120.00137 * 84.92831 * 14 13 12 16 16 H 1.08008 * 120.00000 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00650 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99132 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00340 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47172 * 60.00266 * 19 17 15 21 21 H 1.48508 * 109.46987 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47265 * 299.99883 * 19 17 15 23 23 C 1.53035 * 109.54276 * 61.23544 * 13 12 11 24 24 C 1.46921 * 120.62831 * 180.02562 * 10 8 6 25 25 N 1.47023 * 107.27149 * 337.88615 * 6 5 3 26 26 C 1.34782 * 125.64580 * 178.91578 * 25 6 5 27 27 C 1.50696 * 119.99679 * 180.02562 * 26 25 6 28 28 O 1.21284 * 120.00147 * 0.02562 * 26 25 6 29 29 C 1.47419 * 108.70585 * 358.94325 * 25 6 5 30 30 H 1.09008 * 109.47084 * 299.99479 * 1 2 3 31 31 H 1.08999 * 109.47334 * 59.99199 * 1 2 3 32 32 H 1.08998 * 109.47519 * 179.97438 * 1 2 3 33 33 H 1.09006 * 110.61769 * 35.10165 * 5 3 2 34 34 H 1.08997 * 110.91483 * 271.93846 * 5 3 2 35 35 H 1.08999 * 109.58655 * 353.41839 * 11 10 8 36 36 H 1.09000 * 109.58339 * 113.85024 * 11 10 8 37 37 H 1.08995 * 109.56609 * 185.55379 * 12 11 10 38 38 H 1.09002 * 109.35859 * 65.49951 * 12 11 10 39 39 H 1.08997 * 109.44768 * 301.22053 * 13 12 11 40 40 H 0.96999 * 120.00096 * 264.92546 * 14 13 12 41 41 H 0.97006 * 119.99388 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.50175 * 178.68195 * 23 13 12 43 43 H 1.09006 * 109.52221 * 58.60560 * 23 13 12 44 44 H 1.09001 * 109.58803 * 246.14935 * 24 10 8 45 45 H 1.08993 * 109.59249 * 6.43929 * 24 10 8 46 46 H 1.08998 * 109.47309 * 0.02562 * 27 26 25 47 47 H 1.09002 * 109.47071 * 120.00582 * 27 26 25 48 48 H 1.09004 * 109.47060 * 239.99831 * 27 26 25 49 49 H 1.09002 * 110.36926 * 142.96521 * 29 25 6 50 50 H 1.08995 * 110.36556 * 265.17805 * 29 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3835 2.0104 0.5464 5 6 3.4499 1.2764 0.5809 6 6 4.1233 2.4870 -0.0990 7 1 5.1546 2.2428 -0.3540 8 6 4.0888 3.6779 0.8240 9 8 3.2413 4.5332 0.6788 10 7 4.9997 3.7923 1.8107 11 6 6.0286 2.7612 2.0029 12 6 5.9860 2.2798 3.4521 13 6 6.1168 3.4816 4.3905 14 7 6.1063 3.0188 5.7805 15 6 7.2677 2.5964 6.3703 16 1 8.1916 2.6048 5.8109 17 6 7.2578 2.1574 7.6872 18 7 6.1318 2.1467 8.3687 19 14 8.8420 1.5806 8.4914 20 1 9.8299 2.6894 8.4904 21 1 8.5645 1.1655 9.8900 22 1 9.3909 0.4279 7.7332 23 6 4.9446 4.4387 4.1630 24 6 4.9785 4.9472 2.7187 25 7 3.3619 2.7801 -1.3221 26 6 3.6195 3.7813 -2.1868 27 6 2.7525 3.9662 -3.4054 28 8 4.5492 4.5334 -1.9842 29 6 2.2695 1.7979 -1.4456 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.9554 0.3501 0.3076 34 1 3.4352 1.4010 1.6637 35 1 5.8344 1.9222 1.3348 36 1 7.0114 3.1815 1.7892 37 1 6.8084 1.5873 3.6310 38 1 5.0378 1.7751 3.6374 39 1 7.0537 4.0002 4.1876 40 1 5.2767 3.0116 6.2831 41 1 6.1249 1.8403 9.2891 42 1 5.0257 5.2827 4.8480 43 1 4.0059 3.9141 4.3418 44 1 5.8737 5.5496 2.5647 45 1 4.0931 5.5513 2.5211 46 1 1.9750 3.2023 -3.4175 47 1 2.2912 4.9533 -3.3768 48 1 3.3641 3.8769 -4.3033 49 1 1.3760 2.2731 -1.8505 50 1 2.5768 0.9666 -2.0801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996839672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:48 Heat of formation + Delta-G solvation = -87.928731 kcal Electronic energy + Delta-G solvation = -31224.053610 eV Core-core repulsion = 27059.164043 eV Total energy + Delta-G solvation = -4164.889567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.12045 -39.35593 -38.56443 -37.33254 -36.30624 -34.50307 -32.51984 -31.84318 -30.92187 -29.89828 -29.37457 -28.70001 -26.88891 -25.15832 -23.96379 -22.99743 -22.64219 -21.80793 -20.74282 -19.66488 -18.60644 -17.85122 -17.36717 -17.07786 -16.86625 -16.09900 -15.68969 -15.34856 -15.22204 -14.95001 -14.83943 -14.76088 -14.02819 -13.84669 -13.73080 -13.51316 -13.44661 -13.37120 -13.13148 -13.08637 -12.84421 -12.52479 -12.28659 -12.25005 -12.01136 -11.90002 -11.64148 -11.55960 -11.18562 -10.95706 -10.87432 -10.82332 -10.48056 -10.27894 -10.26955 -9.97613 -9.87156 -9.81156 -9.67972 -8.94795 -8.84550 -8.46842 -6.99683 -5.79086 -3.08336 2.30789 2.52675 2.72856 3.12725 3.36523 3.42116 3.46878 3.47683 3.98016 4.10305 4.38512 4.53286 4.56448 4.65245 4.77495 4.86657 4.91810 4.93992 5.03440 5.07565 5.12581 5.18472 5.29184 5.32839 5.34171 5.36111 5.41432 5.49635 5.50879 5.53061 5.54857 5.64149 5.72759 5.85258 5.95531 6.02714 6.23318 6.36410 6.38421 6.50076 6.61517 6.72601 6.88420 7.02299 7.18717 7.51751 7.66689 7.94874 8.25328 8.39251 9.50424 10.07732 10.42519 11.43403 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.002808 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.591436 B = 9969.964161 C =11002.519524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.371 6.371 3 C 0.077 3.923 4 H 0.085 0.915 5 C -0.118 4.118 6 C 0.120 3.880 7 H 0.104 0.896 8 C 0.514 3.486 9 O -0.537 6.537 10 N -0.602 5.602 11 C 0.105 3.895 12 C -0.150 4.150 13 C 0.179 3.821 14 N -0.724 5.724 15 C -0.240 4.240 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.138 4.138 24 C 0.118 3.882 25 N -0.600 5.600 26 C 0.533 3.467 27 C -0.167 4.167 28 O -0.533 6.533 29 C 0.081 3.919 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 -2.906 -23.282 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.288 6.288 3 C 0.018 3.982 4 H 0.103 0.897 5 C -0.156 4.156 6 C 0.013 3.987 7 H 0.121 0.879 8 C 0.300 3.700 9 O -0.414 6.414 10 N -0.335 5.335 11 C -0.019 4.019 12 C -0.191 4.191 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.177 4.177 24 C -0.005 4.005 25 N -0.337 5.337 26 C 0.323 3.677 27 C -0.226 4.226 28 O -0.409 6.409 29 C -0.042 4.042 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.217 0.783 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.095 0.905 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.723 -2.173 -23.241 25.688 hybrid contribution 0.405 -0.280 0.768 0.912 sum -10.317 -2.453 -22.474 24.850 Atomic orbital electron populations 1.22864 0.80451 1.03160 1.00365 1.87925 1.20186 1.25997 1.94738 1.23242 0.94996 0.85463 0.94513 0.89703 1.22725 0.94191 0.97017 1.01645 1.21538 0.98258 0.93470 0.85450 0.87866 1.20550 0.81102 0.87307 0.81038 1.90647 1.37170 1.42104 1.71446 1.48096 1.30657 1.23887 1.30887 1.21839 0.91032 0.90128 0.98852 1.22601 1.02712 1.01237 0.92588 1.20157 0.95535 0.91460 0.85991 1.42423 1.09146 1.77191 1.07627 1.19191 0.87934 1.35319 0.94712 0.91209 1.24747 0.96934 1.02269 0.96937 1.69657 1.24840 1.53312 1.10283 0.86280 0.82880 0.78564 0.78523 1.21270 1.21725 1.21262 1.22197 1.00198 1.00550 0.94735 1.21593 1.02786 0.87445 0.88665 1.48175 1.31713 1.30955 1.22866 1.20476 0.85116 0.78358 0.83723 1.21865 1.00203 1.04662 0.95881 1.90751 1.31390 1.43109 1.75605 1.22805 0.90537 0.92286 0.98583 0.93534 0.93856 0.89195 0.87962 0.88409 0.90692 0.91272 0.90444 0.92180 0.93361 0.78275 0.93449 0.90543 0.91927 0.91555 0.89514 0.90539 0.88551 0.88635 0.90033 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.89 101.05 1.10 1.27 16 2 O -0.37 -3.29 10.52 -35.23 -0.37 -3.66 16 3 C 0.08 0.69 3.49 -24.52 -0.09 0.61 16 4 H 0.09 0.84 7.90 -51.93 -0.41 0.43 16 5 C -0.12 -1.15 5.50 -24.83 -0.14 -1.29 16 6 C 0.12 1.43 2.36 -68.10 -0.16 1.27 16 7 H 0.10 1.16 6.86 -51.92 -0.36 0.80 16 8 C 0.51 7.88 6.06 -10.98 -0.07 7.81 16 9 O -0.54 -9.90 15.38 5.56 0.09 -9.82 16 10 N -0.60 -8.89 2.98 -173.06 -0.52 -9.40 16 11 C 0.10 1.38 6.14 -3.93 -0.02 1.36 16 12 C -0.15 -2.43 5.64 -26.83 -0.15 -2.58 16 13 C 0.18 3.38 2.73 -67.89 -0.19 3.20 16 14 N -0.72 -17.55 5.12 -53.39 -0.27 -17.83 16 15 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 16 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 19 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.14 -2.29 5.55 -26.63 -0.15 -2.44 16 24 C 0.12 1.80 6.43 -3.73 -0.02 1.78 16 25 N -0.60 -6.74 2.79 -164.33 -0.46 -7.19 16 26 C 0.53 6.75 7.30 -10.98 -0.08 6.67 16 27 C -0.17 -1.27 10.19 36.00 0.37 -0.90 16 28 O -0.53 -9.20 16.72 5.55 0.09 -9.11 16 29 C 0.08 0.64 6.12 -2.53 -0.02 0.63 16 30 H 0.05 0.29 8.11 -51.92 -0.42 -0.13 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.06 7.82 -51.93 -0.41 0.65 16 35 H 0.07 0.80 5.24 -51.93 -0.27 0.53 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.38 10.01 7.80 -40.82 -0.32 9.70 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 46 H 0.08 0.39 6.08 -51.93 -0.32 0.08 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.50 6.94 -51.93 -0.36 0.14 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -35.53 396.96 -7.88 -43.41 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -8.26 Total: 7.39 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 0.14 Total: 10.29 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -0.52 Total: -61.49 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.19 Total: -22.59 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.53 -7.88 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996839672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.522 kcal (2) G-P(sol) polarization free energy of solvation -35.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds